Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu005760.1 Olea europaea HOM05D004340 ORTHO05D006363 0.0e+00 1528.5 771 100.0
MSTRG.717 Avicennia marina HOM05D004340 ORTHO05D006363 1.1e-243 847.0 889 55.1
Dinv16674 Davidia involucrata HOM05D004340 ORTHO05D006363 3.9e-241 838.6 895 54.7
GSVIVG01019948001 Vitis vinifera HOM05D004340 ORTHO05D006363 1.0e-236 823.9 895 53.3
SalBow2G1648 Salvia bowleyana HOM05D004340 ORTHO05D006363 3.0e-233 812.4 924 52.3
Rhsim10G0119600 Rhododendron simsii HOM05D004340 ORTHO05D006363 6.7e-233 811.2 905 53.4
QL03p068099 Quercus lobata HOM05D004340 ORTHO05D006363 1.1e-232 810.4 901 52.4
Nitab4.5_0000040g0090 Nicotiana tabacum HOM05D004340 ORTHO05D006363 2.6e-232 809.3 910 52.3
Migut.L01267 Erythranthe guttata HOM05D004340 ORTHO05D006363 7.4e-232 807.7 895 52.7
Sopen05g003610 Solanum pennellii HOM05D004340 ORTHO05D006363 3.1e-230 802.4 898 52.4
TAR629G2604 Trochodendron aralioides HOM05D004340 ORTHO05D006363 4.1e-230 802.0 884 52.9
Solyc05g007750.4 Solanum lycopersicum HOM05D004340 ORTHO05D006363 7.7e-229 797.7 898 52.3
PGSC0003DMG400018437 Solanum tuberosum HOM05D004340 ORTHO05D006363 1.7e-228 796.6 898 52.1
Nitab4.5_0004300g0030 Nicotiana tabacum HOM05D004340 ORTHO05D006363 5.0e-228 795.0 914 51.6
CSS0018825 Camellia sinensis var. sinensis HOM05D004340 ORTHO05D006363 1.1e-227 793.9 902 52.8
CAN.G1335.16 Capsicum annuum HOM05D004340 ORTHO05D006363 4.7e-226 788.5 900 51.7
Peaxi162Scf00222g00716 Petunia axillaris HOM05D004340 ORTHO05D006363 8.8e-225 784.3 888 51.9
vmacro05308 Vaccinium macrocarpon HOM05D004340 ORTHO05D006363 5.7e-224 781.6 902 52.3
Cc11_g12720 Coffea canephora HOM05D004340 ORTHO05D006363 7.5e-224 781.2 886 52.8
SGA_v2.0_scaffold172G38951 Striga asiatica HOM05D004340 ORTHO05D006363 7.5e-224 781.2 884 51.9
Haze_11982 Corylus avellana HOM05D004340 ORTHO05D006363 5.9e-221 771.5 915 50.6
Prupe.1G035400 Prunus persica HOM05D004340 ORTHO05D006363 2.2e-220 769.6 890 51.1
Manes.01G034000 Manihot esculenta HOM05D004340 ORTHO05D006363 2.9e-220 769.2 902 50.3
RcHm_v2.0_Chr4g0439421 Rosa chinensis HOM05D004340 ORTHO05D006363 8.5e-220 767.7 890 51.6
Atru.chr10.1247 Acer truncatum HOM05D004340 ORTHO05D006363 1.1e-219 767.3 910 50.3
Cfa008953 Carpinus fangiana HOM05D004340 ORTHO05D006363 2.1e-218 763.1 890 51.0
CANSAT64G1884 Cannabis sativa HOM05D004340 ORTHO05D006363 6.1e-218 761.5 904 50.4
Atru.chr11.1746 Acer truncatum HOM05D004340 ORTHO05D006363 1.0e-217 760.8 891 50.6
MD16G1069200 Malus domestica HOM05D004340 ORTHO05D006363 3.0e-217 759.2 888 51.5
Sc11g0002100 Simmondsia chinensis HOM05D004340 ORTHO05D006363 1.2e-216 757.3 883 50.8
FAN13G0065 Fragaria x ananassa HOM05D004340 ORTHO05D006363 7.5e-216 754.6 872 52.4
Gorai.013G087900 Gossypium raimondii HOM05D004340 ORTHO05D006363 2.2e-215 753.1 904 49.7
Gohir.A13G077700 Gossypium hirsutum HOM05D004340 ORTHO05D006363 3.7e-215 752.3 888 50.8
Gohir.D13G076900 Gossypium hirsutum HOM05D004340 ORTHO05D006363 1.4e-214 750.4 894 50.0
FAN18G2257 Fragaria x ananassa HOM05D004340 ORTHO05D006363 2.4e-214 749.6 871 51.8
Thecc.02G342300 Theobroma cacao HOM05D004340 ORTHO05D006363 5.4e-214 748.4 900 49.9
COL.COLO4_27998 Corchorus olitorius HOM05D004340 ORTHO05D006363 2.0e-213 746.5 827 53.6
Glyma.11G220500 Glycine max HOM05D004340 ORTHO05D006363 5.9e-213 745.0 893 50.3
Glyma.18G036900 Glycine max HOM05D004340 ORTHO05D006363 5.9e-213 745.0 902 50.1
Ciclev10030675m.g Citrus clementina HOM05D004340 ORTHO05D006363 7.7e-213 744.6 902 49.7
Aqoxy3G03456 Aquilegia oxysepala HOM05D004340 ORTHO05D006363 2.9e-212 742.7 883 49.7
Nn4g23232 Nelumbo nucifera HOM05D004340 ORTHO05D006363 5.5e-211 738.4 885 49.9
FAN04G3196 Fragaria x ananassa HOM05D004340 ORTHO05D006363 3.6e-210 735.7 894 50.0
Potri.008G089600 Populus trichocarpa HOM05D004340 ORTHO05D006363 4.7e-210 735.3 894 50.2
Phvul.001G233800 Phaseolus vulgaris HOM05D004340 ORTHO05D006363 6.1e-210 734.9 894 49.4
PGR102G3073 Punica granatum HOM05D004340 ORTHO05D006363 1.8e-209 733.4 896 48.8
DCAR_027428 Daucus carota HOM05D004340 ORTHO05D006363 1.2e-208 730.7 885 49.2
Lj3A1035G45 Lonicera japonica HOM05D004340 ORTHO05D006363 3.4e-208 729.2 912 49.8
Medtr4g082265 Medicago truncatula HOM05D004340 ORTHO05D006363 5.7e-208 728.4 895 49.2
TPR.G34046 Trifolium pratense HOM05D004340 ORTHO05D006363 5.7e-208 728.4 895 48.7
Medtr4g082150 Medicago truncatula HOM05D004340 ORTHO05D006363 4.9e-207 725.3 895 48.8
VMungo1383G3199 Vigna mungo HOM05D004340 ORTHO05D006363 6.3e-207 724.9 894 49.0
Sabra08G0067000 Salix brachista HOM05D004340 ORTHO05D006363 1.1e-206 724.2 894 50.0
TWI79G0307 Tripterygium wilfordii HOM05D004340 ORTHO05D006363 4.1e-206 722.2 889 49.8
Ca_18821_v3 Cicer arietinum L. HOM05D004340 ORTHO05D006363 7.8e-205 718.0 879 49.4
PSO063G1986 Papaver somniferum HOM05D004340 ORTHO05D006363 6.6e-204 714.9 894 49.8
arahy.Tifrunner.gnm1.ann1.AR8P07 Arachis hypogaea HOM05D004340 ORTHO05D006363 1.1e-203 714.1 896 48.2
PSO832G0091 Papaver somniferum HOM05D004340 ORTHO05D006363 4.7e-202 708.8 918 49.5
arahy.Tifrunner.gnm1.ann1.MXBT1J Arachis hypogaea HOM05D004340 ORTHO05D006363 2.3e-201 706.4 896 48.0
AT2G04660 Arabidopsis thaliana HOM05D004340 ORTHO05D006363 8.9e-201 704.5 890 48.5
Carub.0003s2628 Capsella rubella HOM05D004340 ORTHO05D006363 4.4e-200 702.2 880 48.2
Lsat_1_v5_gn_8_50141 Lactuca sativa HOM05D004340 ORTHO05D006363 4.4e-200 702.2 883 50.3
THA.LOC104801804 Tarenaya hassleriana HOM05D004340 ORTHO05D006363 9.8e-200 701.0 903 47.7
AL3G42300 Arabidopsis lyrata HOM05D004340 ORTHO05D006363 1.3e-199 700.7 879 48.2
AUR62032818 Chenopodium quinoa HOM05D004340 ORTHO05D006363 2.4e-198 696.4 891 47.8
Lj4g0013877 Lotus japonicus HOM05D004340 ORTHO05D006363 2.4e-198 696.4 902 48.2
Thhalv10027638m.g Eutrema salsugineum HOM05D004340 ORTHO05D006363 1.2e-197 694.1 880 47.7
Eucgr.I00217 Eucalyptus grandis HOM05D004340 ORTHO05D006363 1.6e-197 693.7 870 47.5
Aa31LG10G13720 Aethionema arabicum HOM05D004340 ORTHO05D006363 7.8e-197 691.4 933 46.1
AUR62005824 Chenopodium quinoa HOM05D004340 ORTHO05D006363 1.7e-196 690.3 882 48.0
CsaV3_5G025240 Cucumis sativus L. HOM05D004340 ORTHO05D006363 2.3e-196 689.9 898 46.5
Sp7g01960 Schrenkiella parvula HOM05D004340 ORTHO05D006363 2.3e-196 689.9 880 47.4
MELO3C002960.2 Cucumis melo HOM05D004340 ORTHO05D006363 1.1e-195 687.6 898 46.5
EL10Ac6g13244 Beta vulgaris HOM05D004340 ORTHO05D006363 2.5e-195 686.4 876 47.9
CARHR261990 Cardamine hirsuta HOM05D004340 ORTHO05D006363 9.5e-195 684.5 888 47.1
ClCG09G021920 Citrullus lanatus HOM05D004340 ORTHO05D006363 4.0e-193 679.1 883 46.5
Lj1g0001827 Lotus japonicus HOM05D004340 ORTHO05D006363 1.4e-190 670.6 875 47.2
HanXRQChr12g0362121 Helianthus annuus HOM05D004340 ORTHO05D006363 5.4e-190 668.7 883 47.6
Medtr7g021880 Medicago truncatula HOM05D004340 ORTHO05D006363 2.5e-187 659.8 902 46.1
BcaB05g21922 Brassica carinata HOM05D004340 ORTHO05D006363 1.5e-184 650.6 882 46.0
BraA02t04684Z Brassica rapa HOM05D004340 ORTHO05D006363 1.5e-184 650.6 874 45.9
BcaC03g13079 Brassica carinata HOM05D004340 ORTHO05D006363 2.2e-183 646.7 883 45.5
BolC2t06011H Brassica oleracea HOM05D004340 ORTHO05D006363 6.4e-183 645.2 873 45.5
Actinidia33215 Actinidia chinensis HOM05D004340 ORTHO05D006363 2.3e-180 636.7 716 52.5
Ah.03g134830 Amaranthus hybridus HOM05D004340 ORTHO05D006363 9.5e-179 631.3 945 43.9
FvH4_5g29350 Fragaria vesca HOM05D004340 ORTHO05D006363 4.7e-178 629.0 819 48.1
ATR0564G449 Amborella trichopoda HOM05D004340 ORTHO05D006363 6.8e-177 625.2 884 44.6
Hund25218 Selenicereus undatus HOM05D004340 ORTHO05D006363 3.4e-176 622.9 844 45.7
Cpa.g.sc1.50 Carica papaya HOM05D004340 ORTHO05D006363 4.4e-176 622.5 786 49.4
ECA233G3760 Erigeron canadensis HOM05D004340 ORTHO05D006363 1.4e-174 617.5 778 50.8
BolC4t26245H Brassica oleracea HOM05D004340 ORTHO05D006363 3.9e-172 609.4 872 44.6
C04p46590 Brassica napus HOM05D004340 ORTHO05D006363 7.3e-171 605.1 872 44.6
Sed0000698 Sechium edule HOM05D004340 ORTHO05D006363 2.8e-170 603.2 892 43.5
Aqoxy3G02559 Aquilegia oxysepala HOM05D004340 ORTHO05D006363 6.2e-170 602.1 891 44.0
BcaB06g27417 Brassica carinata HOM05D004340 ORTHO05D006363 5.8e-168 595.5 882 43.8
BraA04t16952Z Brassica rapa HOM05D004340 ORTHO05D006363 7.6e-168 595.1 874 44.4
A04p12890 Brassica napus HOM05D004340 ORTHO05D006363 2.9e-167 593.2 924 42.7
vmacro11375 Vaccinium macrocarpon HOM05D004340 ORTHO05D006363 1.4e-166 590.9 1137 37.5
Zm00001eb227040 Zea mays HOM05D004340 ORTHO05D006363 5.4e-166 589.0 869 43.8
Os04g0484800 Oryza sativa ssp. japonica HOM05D004340 ORTHO05D006363 1.9e-163 580.5 862 44.3
CiPaw.05G131900 Carya illinoinensis HOM05D004340 ORTHO05D006363 5.3e-161 572.4 733 48.0
Lalb_Chr05g0220271 Lupinus albus HOM05D004340 ORTHO05D006363 3.2e-158 563.1 756 47.0
HPP92_021921 Vanilla planifolia HOM05D004340 ORTHO05D006363 1.3e-156 557.8 847 42.0
MBI05_g36413_MAGBIO Magnolia biondii HOM05D004340 ORTHO05D006363 8.7e-156 555.1 708 49.0
unitig_747.g21183 Utricularia gibba HOM05D004340 ORTHO05D006363 2.9e-143 513.5 835 42.6
TPR.G5981 Trifolium pratense HOM05D004340 ORTHO05D006363 3.5e-141 506.5 891 39.5
Psat7g160080 Pisum sativum HOM05D004340 ORTHO05D006363 4.6e-141 506.1 691 46.2
Duzib251G0421 Durio zibethinus HOM05D004340 ORTHO05D006363 8.2e-130 468.8 636 47.0
Ca_29729_v3 Cicer arietinum L. HOM05D004340 ORTHO05D006363 2.9e-127 460.3 380 63.9
Rhsim10G0051900 Rhododendron simsii HOM05D004340 ORTHO05D006363 1.1e-118 431.8 781 39.1
Pp3c11_22070 Physcomitrium patens HOM05D004340 ORTHO05D006363 7.7e-96 355.9 942 30.5
Prupe.1G191200 Prunus persica HOM05D004340 ORTHO05D006363 1.3e-95 355.1 227 76.2
Mapoly0122s0055 Marchantia polymorpha HOM05D004340 ORTHO05D006363 4.7e-93 346.7 956 29.6
HPP92_022007 Vanilla planifolia HOM05D004340 ORTHO05D006363 1.6e-88 331.6 376 49.2
vmacro05169 Vaccinium macrocarpon HOM05D004340 ORTHO05D006363 4.5e-88 330.1 302 58.6
HPP92_022008 Vanilla planifolia HOM05D004340 ORTHO05D006363 8.3e-82 309.3 226 68.1
SMO361G0530 Selaginella moellendorffii HOM05D004340 ORTHO05D006363 1.5e-78 298.5 733 32.3
TPR.G26175 Trifolium pratense HOM05D004340 ORTHO05D006363 1.5e-78 298.5 225 67.6
AagrBONN_evm.TU.Sc2ySwM_344.3807 Anthoceros agrestis HOM05D004340 ORTHO05D006363 1.2e-77 295.4 822 30.5
vmacro05171 Vaccinium macrocarpon HOM05D004340 ORTHO05D006363 4.9e-74 283.5 261 59.8
CDE04G2617 Ceratophyllum demersum HOM05D003388 ORTHO05D003616 3.2e-65 254.2 188 67.0
Ca_30738_v3 Cicer arietinum L. HOM05D004340 ORTHO05D006363 3.5e-64 250.8 172 72.1
C02p00140 Brassica napus HOM05D004340 ORTHO05D006363 4.3e-62 243.8 176 68.2
SEGI_17726 Sequoiadendron giganteum HOM05D004340 ORTHO05D006363 1.5e-59 235.3 590 32.4
Glyma.10G070000 Glycine max HOM05D004340 ORTHO05D006363 3.9e-55 220.7 155 73.5
CDE04G0644 Ceratophyllum demersum HOM05D004340 ORTHO05D006363 2.4e-44 184.9 224 49.6
Eucgr.L00670 Eucalyptus grandis HOM05D004340 ORTHO05D006363 4.5e-43 180.6 175 60.6
Nn1g04521 Nelumbo nucifera HOM05D004340 ORTHO05D006363 4.6e-40 170.6 107 77.6
PRCOL_00002008 Prasinoderma coloniale HOM05D004340 ORTHO05D006363 1.8e-39 168.7 225 43.1
Eucgr.L00684 Eucalyptus grandis HOM05D004340 ORTHO05D006363 7.4e-38 163.3 193 52.3
TPR.G26189 Trifolium pratense HOM05D004340 ORTHO05D006363 3.1e-36 157.9 187 49.2
CBR_g545 Chara braunii HOM05D004340 ORTHO05D006363 7.1e-33 146.7 164 44.5
MCO02G279 Micromonas commoda HOM05D004340 ORTHO05D006363 1.8e-31 142.1 215 36.3
vmacro05170 Vaccinium macrocarpon HOM05D004340 ORTHO05D006363 9.0e-28 129.8 83 79.5
Cre10.g460532 Chlamydomonas reinhardtii HOM05D004340 ORTHO05D006363 2.2e-26 125.2 257 28.0
MBI05_g36411_MAGBIO Magnolia biondii HOM05D004340 ORTHO05D014919 4.9e-26 124.0 204 41.2
Nn1g04520 Nelumbo nucifera HOM05D004340 ORTHO05D006363 8.4e-26 123.2 70 85.7
Cpa.g.sc1.51 Carica papaya HOM05D004340 ORTHO05D014919 5.5e-25 120.6 103 55.3
RcHm_v2.0_Chr1g0372981 Rosa chinensis HOM05D004340 ORTHO05D013606 1.3e-23 115.9 78 69.2
CBR_g543 Chara braunii HOM05D004340 ORTHO05D006363 1.3e-18 99.4 152 40.1
PSO423G0166 Papaver somniferum HOM05D004340 ORTHO05D006363 3.8e-18 97.8 115 54.8
Potri.008G089100 Populus trichocarpa HOM05D004340 ORTHO05D005225 1.9e-17 95.5 71 67.6
Nn1g04518 Nelumbo nucifera HOM05D004340 ORTHO05D014919 9.7e-14 83.2 67 61.2
EL10Ac2g03889 Beta vulgaris HOM05D004340 ORTHO05D014919 2.2e-13 82.0 88 47.7
Lalb_Chr05g0220261 Lupinus albus HOM05D004340 ORTHO05D014919 2.2e-13 82.0 84 46.4
SHI21660 Sapria himalayana HOM05D004340 ORTHO05D006363 8.2e-13 80.1 99 41.4
Nn1g04519 Nelumbo nucifera HOM05D004340 ORTHO05D006363 9.1e-12 76.6 50 68.0
C08p42990 Brassica napus HOM05D004340 ORTHO05D014919 1.2e-11 76.3 114 39.5
BcaC07g37997 Brassica carinata HOM05D004340 ORTHO05D014919 3.4e-11 74.7 74 48.6
BolC8t48379H Brassica oleracea HOM05D004340 ORTHO05D014919 5.9e-11 73.9 113 39.8
Cfa022061 Carpinus fangiana HOM05D004340 ORTHO05D125423 2.2e-10 72.0 215 27.4
FAN24G2810 Fragaria x ananassa HOM05D000001 ORTHO05D000003 2.2e-10 72.0 62 62.9
SEGI_26412 Sequoiadendron giganteum HOM05D004340 ORTHO05D014919 2.1e-08 65.5 96 35.4
BolC8t51851H Brassica oleracea HOM05D004340 ORTHO05D014919 3.6e-08 64.7 120 37.5
SHI21661 Sapria himalayana HOM05D004340 ORTHO05D006363 3.6e-08 64.7 72 50.0
SHI21663 Sapria himalayana HOM05D004340 ORTHO05D014919 1.8e-07 62.4 73 38.4
MD13G1068900 Malus domestica HOM05D004340 ORTHO05D006363 5.1e-07 60.8 36 75.0
Medtr0073s0020 Medicago truncatula HOM05D001042 ORTHO05D007836 5.1e-07 60.8 40 75.0
Medtr7g022050 Medicago truncatula HOM05D001042 ORTHO05D007836 5.1e-07 60.8 41 73.2


User provided reference genes

Program Settings