Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu005458.1 Olea europaea HOM05D004411 ORTHO05D005569 2.3e-224 781.9 414 100.0
Oeu021397.1 Olea europaea HOM05D004411 ORTHO05D005569 1.7e-134 483.4 374 73.8
MSTRG.12964 Avicennia marina HOM05D004411 ORTHO05D005569 1.6e-103 380.6 417 56.6
Migut.H01843 Erythranthe guttata HOM05D004411 ORTHO05D005569 7.6e-98 361.7 421 53.4
Cc02_g24710 Coffea canephora HOM05D004411 ORTHO05D005569 1.9e-93 347.1 422 50.5
CSS0013783 Camellia sinensis var. sinensis HOM05D004411 ORTHO05D005569 1.4e-91 340.9 421 52.5
SalBow7G1998 Salvia bowleyana HOM05D004411 ORTHO05D005569 2.4e-91 340.1 422 51.2
Dinv22283 Davidia involucrata HOM05D004411 ORTHO05D005569 3.4e-90 336.3 416 50.5
Actinidia35328 Actinidia chinensis HOM05D004411 ORTHO05D005569 1.3e-89 334.3 419 50.4
Hma1.2p1_0938F.1_g239200 Hydrangea macrophylla HOM05D004411 ORTHO05D005569 3.8e-89 332.8 417 49.4
Dinv40733 Davidia involucrata HOM05D004411 ORTHO05D005569 2.4e-88 330.1 396 51.8
Nitab4.5_0009551g0010 Nicotiana tabacum HOM05D004411 ORTHO05D005569 2.1e-87 327.0 441 48.8
Solyc07g064300.3 Solanum lycopersicum HOM05D004411 ORTHO05D005569 1.3e-86 324.3 418 48.3
Peaxi162Scf00450g00868 Petunia axillaris HOM05D004411 ORTHO05D005569 1.5e-85 320.9 422 48.3
GSVIVG01008286001 Vitis vinifera HOM05D004411 ORTHO05D005569 1.9e-85 320.5 421 48.0
Ciclev10008629m.g Citrus clementina HOM05D004411 ORTHO05D005569 1.3e-84 317.8 415 48.0
QL08p011929 Quercus lobata HOM05D004411 ORTHO05D005569 2.1e-84 317.0 429 46.4
QL08p012116 Quercus lobata HOM05D004411 ORTHO05D005569 2.8e-84 316.6 429 45.9
Rhsim04G0000600 Rhododendron simsii HOM05D004411 ORTHO05D005569 1.4e-83 314.3 428 48.4
CAN.G337.104 Capsicum annuum HOM05D004411 ORTHO05D005569 3.1e-83 313.2 418 47.1
SGA_v2.0_scaffold9G05058 Striga asiatica HOM05D004411 ORTHO05D005569 4.0e-83 312.8 447 45.0
Rhsim04G0001700 Rhododendron simsii HOM05D004411 ORTHO05D005569 2.6e-82 310.1 418 47.8
Atru.chr2.3274 Acer truncatum HOM05D004411 ORTHO05D005569 2.4e-80 303.5 423 46.3
CiPaw.05G090700 Carya illinoinensis HOM05D004411 ORTHO05D005569 5.5e-80 302.4 414 46.6
vmacro09736 Vaccinium macrocarpon HOM05D004411 ORTHO05D005569 4.6e-79 299.3 418 47.1
Eucgr.E01365 Eucalyptus grandis HOM05D004411 ORTHO05D005569 7.9e-79 298.5 425 45.4
Duzib213G0043 Durio zibethinus HOM05D004411 ORTHO05D005569 1.5e-77 294.3 434 45.6
TWI38G0098 Tripterygium wilfordii HOM05D004411 ORTHO05D005569 5.6e-77 292.4 424 44.6
CANSAT56G2724 Cannabis sativa HOM05D004411 ORTHO05D005569 9.6e-77 291.6 414 45.4
Potri.011G136400 Populus trichocarpa HOM05D004411 ORTHO05D005569 9.6e-77 291.6 427 46.6
Gohir.A01G077000 Gossypium hirsutum HOM05D004411 ORTHO05D005569 1.6e-76 290.8 438 45.0
RcHm_v2.0_Chr5g0037971 Rosa chinensis HOM05D004411 ORTHO05D005569 2.8e-76 290.0 419 45.6
PGR083G2632 Punica granatum HOM05D004411 ORTHO05D005569 3.7e-76 289.7 409 46.5
FvH4_3g22120 Fragaria vesca HOM05D004411 ORTHO05D005569 8.1e-76 288.5 414 45.7
Prupe.4G208500 Prunus persica HOM05D004411 ORTHO05D005569 1.8e-75 287.3 421 45.4
Gorai.002G085400 Gossypium raimondii HOM05D004411 ORTHO05D005569 2.4e-75 287.0 428 44.6
Gohir.D01G064500 Gossypium hirsutum HOM05D004411 ORTHO05D005569 3.1e-75 286.6 428 44.6
TAR627G0926 Trochodendron aralioides HOM05D004411 ORTHO05D005569 2.0e-74 283.9 420 45.5
unitig_0.g2388 Utricularia gibba HOM05D004411 ORTHO05D005569 2.6e-74 283.5 418 43.5
Thecc.07G044400 Theobroma cacao HOM05D004411 ORTHO05D005569 1.9e-72 277.3 434 42.4
PGSC0003DMG402013923 Solanum tuberosum HOM05D004411 ORTHO05D005569 4.2e-72 276.2 421 43.9
FAN25G3657 Fragaria x ananassa HOM05D006818 ORTHO05D008674 7.1e-72 275.4 420 43.8
ECA236G1785 Erigeron canadensis HOM05D004411 ORTHO05D005569 7.9e-71 271.9 406 44.6
MELO3C003591.2 Cucumis melo HOM05D004411 ORTHO05D005569 1.0e-70 271.6 421 42.5
Sabra11G0122500 Salix brachista HOM05D004411 ORTHO05D005569 1.0e-70 271.6 448 42.2
Ca_24447_v3 Cicer arietinum L. HOM05D004411 ORTHO05D005569 1.3e-70 271.2 437 42.6
HanXRQChr11g0336281 Helianthus annuus HOM05D004411 ORTHO05D005569 5.1e-70 269.2 413 42.9
Lj6g0013350 Lotus japonicus HOM05D004411 ORTHO05D005569 1.9e-69 267.3 287 51.2
Ca_05663_v3 Cicer arietinum L. HOM05D004411 ORTHO05D005569 3.3e-69 266.5 435 41.1
Medtr3g019330 Medicago truncatula HOM05D004411 ORTHO05D005569 7.4e-69 265.4 435 43.9
Glyma.08G313000 Glycine max HOM05D004411 ORTHO05D005569 1.6e-68 264.2 377 44.0
Nitab4.5_0000397g0320 Nicotiana tabacum HOM05D004411 ORTHO05D005569 2.8e-68 263.5 451 41.9
TWI38G2195 Tripterygium wilfordii HOM05D004411 ORTHO05D005569 2.8e-68 263.5 247 59.1
PSO210G6597 Papaver somniferum HOM05D004411 ORTHO05D005569 8.2e-68 261.9 423 44.0
CsaV3_3G017510 Cucumis sativus L. HOM05D004411 ORTHO05D005569 1.1e-67 261.5 417 41.7
ClCG10G005570 Citrullus lanatus HOM05D004411 ORTHO05D005569 1.4e-67 261.2 415 41.7
Lalb_Chr18g0049751 Lupinus albus HOM05D004411 ORTHO05D005569 1.4e-67 261.2 396 42.9
TAR624G0740 Trochodendron aralioides HOM05D004411 ORTHO05D005569 2.4e-67 260.4 279 54.8
Hund07317 Selenicereus undatus HOM05D004411 ORTHO05D005569 3.1e-67 260.0 434 41.5
PSO210G7535 Papaver somniferum HOM05D004411 ORTHO05D005569 9.0e-67 258.5 416 42.5
Lsat_1_v5_gn_7_109101 Lactuca sativa HOM05D004411 ORTHO05D005569 1.5e-66 257.7 370 45.4
arahy.Tifrunner.gnm1.ann1.01DGNM Arachis hypogaea HOM05D004411 ORTHO05D005569 2.6e-66 256.9 288 51.0
THA.LOC104798777 Tarenaya hassleriana HOM05D004411 ORTHO05D005569 2.6e-66 256.9 416 41.3
Atru.chr7.1306 Acer truncatum HOM05D004411 ORTHO05D005569 3.4e-66 256.5 276 52.2
arahy.Tifrunner.gnm1.ann1.7KL5HB Arachis hypogaea HOM05D004411 ORTHO05D005569 5.9e-66 255.8 388 42.5
EL10Ac9g22002 Beta vulgaris HOM05D004411 ORTHO05D005569 1.0e-65 255.0 418 42.6
Sed0027425 Sechium edule HOM05D004411 ORTHO05D005569 1.0e-65 255.0 414 40.1
TPR.G3855 Trifolium pratense HOM05D004411 ORTHO05D005569 1.0e-65 255.0 453 40.8
AUR62000402 Chenopodium quinoa HOM05D004411 ORTHO05D005569 2.2e-65 253.8 395 42.5
Thhalv10011488m.g Eutrema salsugineum HOM05D004411 ORTHO05D005569 2.2e-65 253.8 442 39.8
RcHm_v2.0_Chr1g0330851 Rosa chinensis HOM05D004411 ORTHO05D005569 3.8e-65 253.1 223 61.0
CiPaw.11G186800 Carya illinoinensis HOM05D004411 ORTHO05D005569 5.0e-65 252.7 226 60.2
Aa31LG10G3320 Aethionema arabicum HOM05D004411 ORTHO05D005569 2.5e-64 250.4 415 40.7
MD11G1222400 Malus domestica HOM05D004411 ORTHO05D005569 2.5e-64 250.4 385 42.6
FAN16G0093 Fragaria x ananassa HOM05D006818 ORTHO05D008674 3.2e-64 250.0 433 40.9
Carub.0001s3986 Capsella rubella HOM05D004411 ORTHO05D005569 2.1e-63 247.3 449 38.3
AT1G50910 Arabidopsis thaliana HOM05D004411 ORTHO05D005569 2.7e-63 246.9 315 46.0
Psat5g216880 Pisum sativum HOM05D004411 ORTHO05D005569 2.7e-63 246.9 299 49.2
Lj2g0018498 Lotus japonicus HOM05D004411 ORTHO05D005569 1.3e-62 244.6 284 48.6
DCAR_008678 Daucus carota HOM05D004411 ORTHO05D005569 1.8e-62 244.2 419 43.4
CARHR040960 Cardamine hirsuta HOM05D004411 ORTHO05D005569 6.7e-62 242.3 244 52.9
Sp1g37650 Schrenkiella parvula HOM05D004411 ORTHO05D005569 1.5e-61 241.1 446 38.1
FAN21G4008 Fragaria x ananassa HOM05D004411 ORTHO05D005569 3.3e-61 240.0 418 40.7
AL1G58640 Arabidopsis lyrata HOM05D004411 ORTHO05D005569 2.2e-60 237.3 362 41.2
Medtr4g088440 Medicago truncatula HOM05D004411 ORTHO05D005569 2.2e-60 237.3 236 54.7
Phvul.006G038300 Phaseolus vulgaris HOM05D004411 ORTHO05D005569 1.1e-59 235.0 254 52.0
Sc06g0005160 Simmondsia chinensis HOM05D004411 ORTHO05D005569 1.4e-59 234.6 385 42.9
Glyma.08G318600 Glycine max HOM05D004411 ORTHO05D005569 2.0e-58 230.7 252 52.0
BcaC08g43264 Brassica carinata HOM05D004411 ORTHO05D005569 2.1e-55 220.7 345 42.9
C06p06080 Brassica napus HOM05D004411 ORTHO05D005569 2.1e-55 220.7 345 42.9
BolC6t35721H Brassica oleracea HOM05D004411 ORTHO05D005569 2.1e-55 220.7 345 42.9
BraA06t23489Z Brassica rapa HOM05D004411 ORTHO05D005569 2.7e-55 220.3 255 51.0
Haze_09645 Corylus avellana HOM05D006818 ORTHO05D008674 7.9e-55 218.8 401 39.9
A06p02820 Brassica napus HOM05D004411 ORTHO05D005569 1.0e-54 218.4 276 47.5
BcaB07g33532 Brassica carinata HOM05D004411 ORTHO05D005569 1.4e-54 218.0 310 44.5
SHI31835 Sapria himalayana HOM05D004411 ORTHO05D005569 1.8e-54 217.6 262 50.0
AUR62006758 Chenopodium quinoa HOM05D004411 ORTHO05D005569 3.3e-53 213.4 417 37.9
BolC5t32046H Brassica oleracea HOM05D004411 ORTHO05D005569 3.1e-51 206.8 215 55.3
Manes.03G127300 Manihot esculenta HOM05D004411 ORTHO05D005569 3.1e-51 206.8 258 46.1
Cpa.g.sc12.166 Carica papaya HOM05D004411 ORTHO05D005569 5.3e-51 206.1 415 36.9
CDE07G0547 Ceratophyllum demersum HOM05D004411 ORTHO05D005569 5.3e-51 206.1 282 46.8
Nn1g07099 Nelumbo nucifera HOM05D004411 ORTHO05D005569 1.0e-49 201.8 201 58.2
Aqoxy3G00168 Aquilegia oxysepala HOM05D004411 ORTHO05D005569 8.5e-49 198.7 424 37.5
Lalb_Chr15g0080391 Lupinus albus HOM05D004411 ORTHO05D005569 1.1e-48 198.4 189 56.6
Aqoxy7G03937 Aquilegia oxysepala HOM05D004411 ORTHO05D005569 9.4e-48 195.3 421 37.8
AL8G37460 Arabidopsis lyrata HOM05D004411 ORTHO05D005569 1.2e-47 194.9 196 54.6
C05p33200 Brassica napus HOM05D004411 ORTHO05D005569 4.7e-47 193.0 195 57.4
AL2G19790 Arabidopsis lyrata HOM05D004411 ORTHO05D005569 2.3e-46 190.7 187 55.1
BcaB06g26197 Brassica carinata HOM05D004411 ORTHO05D005569 3.0e-46 190.3 260 46.9
FAN11G0521 Fragaria x ananassa HOM05D006818 ORTHO05D008674 3.0e-46 190.3 407 35.9
BcaB02g11193 Brassica carinata HOM05D004411 ORTHO05D005569 1.1e-45 188.3 362 36.2
ATR0564G530 Amborella trichopoda HOM05D004411 ORTHO05D005569 2.6e-45 187.2 322 40.4
Sopen07g032450 Solanum pennellii HOM05D004411 ORTHO05D005569 2.4e-43 180.6 297 42.8
Nitab4.5_0000622g0210 Nicotiana tabacum HOM05D004411 ORTHO05D005569 4.5e-42 176.4 237 47.7
PGSC0003DMG401013923 Solanum tuberosum HOM05D004411 ORTHO05D005569 7.7e-42 175.6 252 42.5
HPP92_013625 Vanilla planifolia HOM05D004411 ORTHO05D005569 3.2e-40 170.2 418 36.4
Zm00001eb253190 Zea mays HOM05D004411 ORTHO05D005569 6.1e-39 166.0 219 41.1
Os09g0504900 Oryza sativa ssp. japonica HOM05D004411 ORTHO05D005569 1.4e-38 164.9 221 42.5
PSO210G0554 Papaver somniferum HOM05D004411 ORTHO05D005569 2.3e-38 164.1 278 40.6
Zm00001eb317630 Zea mays HOM05D004411 ORTHO05D005569 2.3e-38 164.1 309 34.3
COL.COLO4_09627 Corchorus olitorius HOM05D004411 ORTHO05D005569 3.0e-38 163.7 308 38.6
SEGI_26616 Sequoiadendron giganteum HOM05D004411 ORTHO05D005569 4.0e-38 163.3 435 32.4
MD03G1208200 Malus domestica HOM05D004411 ORTHO05D005569 2.0e-37 161.0 385 33.2
Oeu034511.1 Olea europaea HOM05D004411 ORTHO05D005569 4.8e-36 156.4 81 96.3
DCAR_011015 Daucus carota HOM05D004411 ORTHO05D005569 4.4e-29 133.3 188 42.6
ECA236G1239 Erigeron canadensis HOM05D004411 ORTHO05D005569 3.7e-28 130.2 252 39.3
VMungo1383G2244 Vigna mungo HOM05D004411 ORTHO05D005569 3.1e-27 127.1 113 54.9
PSO339G6638 Papaver somniferum HOM05D004411 ORTHO05D005569 9.1e-27 125.6 178 46.6
Ah.06g195930 Amaranthus hybridus HOM05D004411 ORTHO05D005569 1.2e-26 125.2 199 43.2
Cc09_g02490 Coffea canephora HOM05D004411 ORTHO05D005569 2.0e-26 124.4 93 69.9
Hma1.2p1_3713F.1_g337350 Hydrangea macrophylla HOM05D004411 ORTHO05D005569 2.7e-26 124.0 85 69.4
Cc00_g16970 Coffea canephora HOM05D004411 ORTHO05D005569 5.9e-26 122.9 119 57.1
Glyma.09G101500 Glycine max HOM05D004411 ORTHO05D005569 9.5e-24 115.5 84 66.7
Glyma.09G101400 Glycine max HOM05D004411 ORTHO05D005569 1.6e-23 114.8 239 36.4
Cc02_g22100 Coffea canephora HOM05D004411 ORTHO05D005569 6.1e-23 112.8 113 54.0
BcaC05g27378 Brassica carinata HOM05D003430 ORTHO05D004809 9.8e-21 105.5 86 61.6
VMungo0540G0671 Vigna mungo HOM05D004411 ORTHO05D005569 2.8e-20 104.0 114 46.5
A05p19860 Brassica napus HOM05D004411 ORTHO05D005569 1.1e-19 102.1 109 51.4
BraA05t20891Z Brassica rapa HOM05D004411 ORTHO05D005569 1.1e-19 102.1 109 51.4
VMungo1383G3213 Vigna mungo HOM05D004411 ORTHO05D005569 1.8e-19 101.3 114 46.5
Pp3c25_11530 Physcomitrium patens HOM05D004411 ORTHO05D005569 3.3e-16 90.5 220 32.7
Mapoly0160s0028 Marchantia polymorpha HOM05D004411 ORTHO05D005569 1.4e-14 85.1 212 30.7
EL10Ac9g22233 Beta vulgaris HOM05D004411 ORTHO05D005569 6.8e-14 82.8 263 31.2
PGSC0003DMG400013925 Solanum tuberosum HOM05D004411 ORTHO05D005569 5.7e-13 79.7 81 50.6
arahy.Tifrunner.gnm1.ann1.ZM7UYF Arachis hypogaea HOM05D004411 ORTHO05D005569 3.7e-12 77.0 98 41.8
SMO367G0149 Selaginella moellendorffii HOM05D004411 ORTHO05D005569 2.4e-11 74.3 249 28.5
arahy.Tifrunner.gnm1.ann1.H97TV8 Arachis hypogaea HOM05D004411 ORTHO05D005569 9.2e-11 72.4 83 47.0
Haze_07158 Corylus avellana HOM05D004411 ORTHO05D005569 2.0e-10 71.2 68 52.9
GSVIVG01036883001 Vitis vinifera HOM05D004411 ORTHO05D005569 3.5e-10 70.5 52 59.6
Lalb_Chr15g0080381 Lupinus albus HOM05D004411 ORTHO05D005569 5.9e-10 69.7 103 40.8


User provided reference genes

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