Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu005379.1 Olea europaea HOM05D005139 ORTHO05D006125 0.0e+00 1448.0 708 100.0
SalBow7G0115 Salvia bowleyana HOM05D005139 ORTHO05D006125 6.6e-219 764.6 814 53.6
SalBow7G2844 Salvia bowleyana HOM05D005139 ORTHO05D006125 8.7e-219 764.2 814 53.4
CAN.G443.5 Capsicum annuum HOM05D005139 ORTHO05D006125 1.1e-218 763.8 762 56.7
Atru.chr2.2128 Acer truncatum HOM05D005139 ORTHO05D006125 1.6e-217 760.0 761 55.6
CSS0042561 Camellia sinensis var. sinensis HOM05D005139 ORTHO05D006125 9.0e-216 754.2 762 56.2
Manes.15G095700 Manihot esculenta HOM05D005139 ORTHO05D006125 2.0e-215 753.1 761 56.0
Solyc12g014320.2 Solanum lycopersicum HOM05D005139 ORTHO05D006125 1.3e-214 750.4 762 56.0
Actinidia12584 Actinidia chinensis HOM05D005139 ORTHO05D006125 1.7e-214 750.0 764 55.5
Sopen12g006100 Solanum pennellii HOM05D005139 ORTHO05D006125 1.7e-214 750.0 762 56.2
Eucgr.F01248 Eucalyptus grandis HOM05D005139 ORTHO05D006125 2.2e-214 749.6 761 54.9
TWI38G1771 Tripterygium wilfordii HOM05D005139 ORTHO05D006125 1.1e-213 747.3 761 54.7
Dinv18369 Davidia involucrata HOM05D005139 ORTHO05D006125 1.4e-213 746.9 751 56.5
Ciclev10023690m.g Citrus clementina HOM05D005139 ORTHO05D006125 4.2e-213 745.3 751 55.5
MELO3C008916.2 Cucumis melo HOM05D005139 ORTHO05D006125 2.1e-212 743.0 761 54.5
CsaV3_4G030530 Cucumis sativus L. HOM05D005139 ORTHO05D006125 2.1e-212 743.0 761 54.5
Peaxi162Scf00000g06812 Petunia axillaris HOM05D005139 ORTHO05D006125 2.3e-211 739.6 760 55.5
Migut.H02003 Erythranthe guttata HOM05D005139 ORTHO05D006125 5.1e-211 738.4 730 56.6
Lj8A148G34 Lonicera japonica HOM05D005139 ORTHO05D006125 6.2e-209 731.5 782 53.5
Cc05_g10990 Coffea canephora HOM05D005139 ORTHO05D006125 5.3e-208 728.4 764 53.9
Cfa019555 Carpinus fangiana HOM05D005139 ORTHO05D006125 6.9e-208 728.0 764 53.5
SGA_v2.0_scaffold130G34288 Striga asiatica HOM05D005139 ORTHO05D006125 8.4e-206 721.1 719 55.9
Sabra11G0096100 Salix brachista HOM05D005139 ORTHO05D006125 1.9e-205 719.9 799 52.2
Potri.001G389300 Populus trichocarpa HOM05D005139 ORTHO05D006125 4.2e-205 718.8 761 53.5
Ciclev10019589m.g Citrus clementina HOM05D005139 ORTHO05D006125 5.5e-205 718.4 763 53.9
Psat4g140160 Pisum sativum HOM05D005139 ORTHO05D006125 1.8e-203 713.4 761 53.6
Thecc.07G118200 Theobroma cacao HOM05D005139 ORTHO05D006125 3.9e-203 712.2 757 53.2
A07p43980 Brassica napus HOM05D005139 ORTHO05D006125 5.1e-203 711.8 760 52.1
BraA07t31905Z Brassica rapa HOM05D005139 ORTHO05D006125 5.1e-203 711.8 760 52.1
C06p52650 Brassica napus HOM05D005139 ORTHO05D006125 4.3e-202 708.8 760 52.0
AL2G39160 Arabidopsis lyrata HOM05D005139 ORTHO05D006125 2.1e-201 706.4 759 52.2
BcaC08g47457 Brassica carinata HOM05D005139 ORTHO05D006125 8.1e-201 704.5 760 51.8
Aqoxy3G02037 Aquilegia oxysepala HOM05D005139 ORTHO05D006125 3.1e-200 702.6 763 51.4
MD11G1264600 Malus domestica HOM05D005139 ORTHO05D006125 5.3e-200 701.8 760 53.2
ClCG04G002160 Citrullus lanatus HOM05D005139 ORTHO05D006125 6.9e-200 701.4 753 52.6
RcHm_v2.0_Chr5g0030761 Rosa chinensis HOM05D005139 ORTHO05D006125 1.5e-199 700.3 757 52.3
CiPaw.11G159600 Carya illinoinensis HOM05D005139 ORTHO05D006125 2.0e-199 699.9 761 52.7
Duzib213G0634 Durio zibethinus HOM05D005139 ORTHO05D006125 4.5e-199 698.7 763 52.0
Thhalv10018370m.g Eutrema salsugineum HOM05D005139 ORTHO05D006125 5.8e-199 698.4 760 51.7
GSVIVG01014182001 Vitis vinifera HOM05D005139 ORTHO05D006125 7.6e-199 698.0 762 52.9
BcaB03g16034 Brassica carinata HOM05D005139 ORTHO05D006125 1.3e-198 697.2 760 51.4
PSO063G5899 Papaver somniferum HOM05D005139 ORTHO05D006125 2.2e-198 696.4 756 52.1
Gohir.D01G042704 Gossypium hirsutum HOM05D005139 ORTHO05D006125 4.9e-198 695.3 763 51.6
Gorai.002G053800 Gossypium raimondii HOM05D005139 ORTHO05D006125 4.9e-198 695.3 763 51.6
PSO782G2705 Papaver somniferum HOM05D005139 ORTHO05D006125 1.9e-197 693.3 756 51.9
Sed0024992 Sechium edule HOM05D005139 ORTHO05D006125 1.9e-197 693.3 757 52.0
Sp5g33790 Schrenkiella parvula HOM05D005139 ORTHO05D006125 2.5e-197 693.0 760 51.2
Gohir.A01G053400 Gossypium hirsutum HOM05D005139 ORTHO05D006125 4.2e-197 692.2 763 51.4
Carub.0002s2560 Capsella rubella HOM05D005139 ORTHO05D006125 5.5e-197 691.8 759 51.4
Aa31LG4G2260 Aethionema arabicum HOM05D005139 ORTHO05D006125 7.1e-197 691.4 760 51.4
Potri.011G108800 Populus trichocarpa HOM05D005139 ORTHO05D006125 7.9e-196 688.0 761 52.4
unitig_26.g9517 Utricularia gibba HOM05D005139 ORTHO05D006125 3.0e-195 686.0 724 53.7
COL.COLO4_17530 Corchorus olitorius HOM05D005139 ORTHO05D006125 1.5e-194 683.7 761 51.4
THA.LOC104812316 Tarenaya hassleriana HOM05D005139 ORTHO05D006125 3.3e-194 682.6 760 50.8
AT1G78770 Arabidopsis thaliana HOM05D005139 ORTHO05D006125 7.4e-194 681.4 759 51.0
Nitab4.5_0000035g0250 Nicotiana tabacum HOM05D005139 ORTHO05D006125 1.3e-193 680.6 414 82.9
CANSAT35G0508 Cannabis sativa HOM05D005139 ORTHO05D006125 6.3e-193 678.3 757 51.8
CARHR072310 Cardamine hirsuta HOM05D005139 ORTHO05D006125 1.4e-192 677.2 760 50.5
Lalb_Chr03g0031181 Lupinus albus HOM05D005139 ORTHO05D006125 1.4e-192 677.2 757 51.7
Lsat_1_v5_gn_7_102480 Lactuca sativa HOM05D005139 ORTHO05D006125 3.1e-192 676.0 752 51.7
Phvul.011G165500 Phaseolus vulgaris HOM05D005139 ORTHO05D006125 4.1e-192 675.6 755 52.1
Lj3g0013017 Lotus japonicus HOM05D005139 ORTHO05D006125 5.3e-192 675.2 761 51.5
Glyma.06G228700 Glycine max HOM05D005139 ORTHO05D006125 9.0e-192 674.5 761 51.5
HanXRQChr15g0495211 Helianthus annuus HOM05D005139 ORTHO05D006125 5.9e-191 671.8 755 51.4
Aqoxy4G00276 Aquilegia oxysepala HOM05D005139 ORTHO05D006125 1.3e-190 670.6 763 49.5
ECA236G1068 Erigeron canadensis HOM05D005139 ORTHO05D006125 1.3e-190 670.6 786 49.6
HanXRQChr11g0331031 Helianthus annuus HOM05D005139 ORTHO05D006125 1.7e-190 670.2 753 51.1
Medtr8g058380 Medicago truncatula HOM05D005139 ORTHO05D006125 1.1e-189 667.5 762 51.0
Ah.04g164210 Amaranthus hybridus HOM05D005139 ORTHO05D006125 3.2e-189 666.0 747 51.4
FAN16G0871 Fragaria x ananassa HOM05D005139 ORTHO05D006125 3.2e-189 666.0 755 50.1
FAN11G0516 Fragaria x ananassa HOM05D005139 ORTHO05D006125 2.7e-188 662.9 755 49.9
ATR0127G028 Amborella trichopoda HOM05D005139 ORTHO05D006125 3.5e-188 662.5 755 49.5
Glyma.12G156300 Glycine max HOM05D005139 ORTHO05D006125 1.3e-187 660.6 757 51.1
FvH4_3g18210 Fragaria vesca HOM05D005139 ORTHO05D006125 1.8e-187 660.2 759 49.8
QL08p026113 Quercus lobata HOM05D005139 ORTHO05D006125 3.9e-187 659.1 852 47.2
FAN21G0160 Fragaria x ananassa HOM05D005139 ORTHO05D006125 9.7e-186 654.4 758 49.5
PGR083G0616 Punica granatum HOM05D005139 ORTHO05D006125 9.7e-186 654.4 774 49.2
arahy.Tifrunner.gnm1.ann1.405FF9 Arachis hypogaea HOM05D005139 ORTHO05D006125 2.2e-185 653.3 746 51.1
FAN25G1917 Fragaria x ananassa HOM05D005139 ORTHO05D006125 8.2e-185 651.4 759 49.1
arahy.Tifrunner.gnm1.ann1.J0RB3X Arachis hypogaea HOM05D005139 ORTHO05D006125 1.4e-184 650.6 753 50.6
Sc03g0010570 Simmondsia chinensis HOM05D005139 ORTHO05D006125 8.5e-182 641.3 757 48.3
MBI06_g15765_MAGBIO Magnolia biondii HOM05D005139 ORTHO05D006125 1.6e-180 637.1 749 49.9
EL10Ac4g08361 Beta vulgaris HOM05D005139 ORTHO05D006125 7.9e-180 634.8 817 46.9
SHI27616 Sapria himalayana HOM05D005139 ORTHO05D006125 5.7e-178 628.6 754 48.4
AUR62037557 Chenopodium quinoa HOM05D005139 ORTHO05D006125 2.8e-177 626.3 762 48.4
Zm00001eb399210 Zea mays HOM05D005139 ORTHO05D006125 8.2e-177 624.8 751 47.1
AUR62019588 Chenopodium quinoa HOM05D005139 ORTHO05D006125 5.9e-175 618.6 711 49.9
Prupe.4G161700 Prunus persica HOM05D005139 ORTHO05D006125 2.0e-170 603.6 753 48.7
Nitab4.5_0007851g0020 Nicotiana tabacum HOM05D005139 ORTHO05D006125 1.3e-169 600.9 435 72.6
Haze_09316 Corylus avellana HOM05D005139 ORTHO05D006125 6.3e-169 598.6 495 64.8
Os03g0236966 Oryza sativa ssp. japonica HOM05D005139 ORTHO05D006125 1.4e-168 597.4 751 45.5
Hund10469 Selenicereus undatus HOM05D005139 ORTHO05D006125 3.0e-163 579.7 404 71.5
vmacro11947 Vaccinium macrocarpon HOM05D005139 ORTHO05D006125 2.0e-162 577.0 536 59.9
VMungo1127G1423 Vigna mungo HOM05D005139 ORTHO05D006125 7.0e-160 568.5 377 76.7
TAR626G0095 Trochodendron aralioides HOM05D005139 ORTHO05D006125 1.5e-157 560.8 376 76.1
Prupe.4G162300 Prunus persica HOM05D005139 ORTHO05D006125 9.1e-152 541.6 671 48.1
DCAR_013162 Daucus carota HOM05D005139 ORTHO05D006125 8.6e-142 508.4 756 43.8
Dinv15003 Davidia involucrata HOM05D005139 ORTHO05D006125 7.3e-141 505.4 335 77.0
Mapoly0145s0019 Marchantia polymorpha HOM05D005139 ORTHO05D006125 1.7e-134 484.2 755 38.3
C03p92750 Brassica napus HOM05D005139 ORTHO05D006125 7.3e-133 478.8 658 43.9
Pp3c16_8790 Physcomitrium patens HOM05D005139 ORTHO05D006125 2.8e-132 476.9 766 37.2
Ca_19229_v3 Cicer arietinum L. HOM05D005139 ORTHO05D006125 2.4e-128 463.8 558 48.2
SMO244G0086 Selaginella moellendorffii HOM05D005139 ORTHO05D006125 1.4e-120 438.0 744 36.2
Cpa.g.sc77.24 Carica papaya HOM05D005139 ORTHO05D006125 5.8e-114 416.0 346 64.5
Zm00001eb010020 Zea mays HOM05D005139 ORTHO05D006125 9.9e-106 388.7 551 41.4
TPR.G5739 Trifolium pratense HOM05D005139 ORTHO05D006125 1.3e-100 371.7 489 45.6
AagrBONN_evm.TU.Sc2ySwM_368.2003 Anthoceros agrestis HOM05D005139 ORTHO05D006125 4.8e-100 369.8 715 33.4
CDE06G2579 Ceratophyllum demersum HOM05D005139 ORTHO05D006125 6.9e-99 365.9 446 47.1
SEGI_23856 Sequoiadendron giganteum HOM05D005139 ORTHO05D006125 9.6e-93 345.5 276 60.9
TPR.G5772 Trifolium pratense HOM05D005139 ORTHO05D006125 4.8e-92 343.2 269 68.0
RcHm_v2.0_Chr1g0337671 Rosa chinensis HOM05D005139 ORTHO05D006125 2.1e-87 327.8 197 80.2
MD00G1077100 Malus domestica HOM05D005139 ORTHO05D006125 2.7e-87 327.4 304 60.5
RcHm_v2.0_Chr3g0469831 Rosa chinensis HOM05D005139 ORTHO05D006125 2.7e-87 327.4 206 78.6
MCO01G684 Micromonas commoda HOM05D005139 ORTHO05D006125 9.0e-75 285.8 844 27.0
Ca_28352_v3 Cicer arietinum L. HOM05D005139 ORTHO05D006125 2.2e-65 254.6 154 83.1
HPP92_004206 Vanilla planifolia HOM05D005139 ORTHO05D006125 2.5e-64 251.1 152 78.9
BolC6t40284H Brassica oleracea HOM05D005139 ORTHO05D006125 1.0e-57 229.2 139 80.6
Potri.001G389500 Populus trichocarpa HOM05D005139 ORTHO05D006125 1.0e-54 219.2 134 79.9
CBR_g50377 Chara braunii HOM05D005139 ORTHO05D006125 8.8e-54 216.1 375 36.0
Ciclev10023736m.g Citrus clementina HOM05D005139 ORTHO05D006125 3.7e-52 210.7 152 71.1
Ciclev10023923m.g Citrus clementina HOM05D005139 ORTHO05D006125 9.1e-51 206.1 152 69.7
MD03G1275700 Malus domestica HOM05D005139 ORTHO05D006125 2.0e-50 204.9 171 64.9
CBR_g50375 Chara braunii HOM05D005139 ORTHO05D006125 4.5e-50 203.8 163 60.1
Ciclev10023408m.g Citrus clementina HOM05D005139 ORTHO05D006125 8.5e-49 199.5 459 33.1
Cfa023795 Carpinus fangiana HOM05D005139 ORTHO05D006125 3.6e-47 194.1 426 29.8
HPP92_004205 Vanilla planifolia HOM05D005139 ORTHO05D006125 6.7e-46 189.9 395 33.2
PRCOL_00005307 Prasinoderma coloniale HOM05D005139 ORTHO05D006125 1.1e-43 182.6 413 30.0
Aqoxy256s002 Aquilegia oxysepala HOM05D005139 ORTHO05D006125 1.4e-43 182.2 109 82.6
Cpa.g.sc77.22 Carica papaya HOM05D005139 ORTHO05D006125 3.1e-43 181.0 118 73.7
vmacro11946 Vaccinium macrocarpon HOM05D005139 ORTHO05D006125 7.0e-43 179.9 118 73.7
VMungo1127G2083 Vigna mungo HOM05D005139 ORTHO05D006125 6.5e-41 173.3 118 74.6
Hund10473 Selenicereus undatus HOM05D005139 ORTHO05D006125 5.7e-37 160.2 112 67.9
Cre13.g562950 Chlamydomonas reinhardtii HOM05D005139 ORTHO05D006125 1.7e-36 158.7 202 40.6
Ciclev10024516m.g Citrus clementina HOM05D005139 ORTHO05D006125 4.8e-36 157.1 459 29.8
Haze_27412 Corylus avellana HOM05D005139 ORTHO05D006125 1.6e-34 152.1 150 48.7
Sabra16G0255500 Salix brachista HOM05D005139 ORTHO05D006125 2.7e-34 151.4 162 51.9
MD03G1275800 Malus domestica HOM05D005139 ORTHO05D006125 7.7e-34 149.8 85 87.1
Oeu062674.2 Olea europaea HOM05D001876 ORTHO05D002002 2.6e-29 134.8 115 62.6
Rhsim12G0175500 Rhododendron simsii HOM05D005139 ORTHO05D006125 1.5e-24 119.0 117 54.7
Rhsim02G0051300 Rhododendron simsii HOM05D005139 ORTHO05D006125 3.4e-21 107.8 63 77.8
SEGI_13361 Sequoiadendron giganteum HOM05D005139 ORTHO05D006125 9.5e-16 89.7 74 60.8
CBR_g34498 Chara braunii HOM05D003088 ORTHO05D006665 2.3e-14 85.1 75 56.0
Rhsim08G0243300 Rhododendron simsii HOM05D005139 ORTHO05D006125 9.8e-13 79.7 47 72.3
ClCG05G009350 Citrullus lanatus HOM05D005139 ORTHO05D006125 3.5e-10 71.2 53 66.0


User provided reference genes

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