Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu005357.1 Olea europaea HOM05D003290 ORTHO05D003866 7.6e-184 647.1 347 100.0
Migut.E00570 Erythranthe guttata HOM05D003290 ORTHO05D003866 1.3e-61 241.1 345 49.0
MSTRG.2101 Avicennia marina HOM05D003290 ORTHO05D003866 2.4e-60 236.9 348 48.6
Cfa015081 Carpinus fangiana HOM05D003290 ORTHO05D003866 2.0e-59 233.8 334 46.4
Dinv07020 Davidia involucrata HOM05D003290 ORTHO05D003866 1.3e-58 231.1 323 48.0
Lsat_1_v5_gn_5_35481 Lactuca sativa HOM05D003290 ORTHO05D003866 1.3e-58 231.1 343 47.5
HanXRQChr15g0469331 Helianthus annuus HOM05D003290 ORTHO05D003866 2.9e-58 229.9 319 49.5
Ciclev10018329m.g Citrus clementina HOM05D003290 ORTHO05D003866 1.9e-57 227.3 339 45.7
GSVIVG01011573001 Vitis vinifera HOM05D003290 ORTHO05D003866 1.9e-57 227.3 326 47.5
CANSAT78G1043 Cannabis sativa HOM05D003290 ORTHO05D003866 2.4e-57 226.9 345 45.8
CAN.G282.94 Capsicum annuum HOM05D003290 ORTHO05D003866 2.4e-57 226.9 326 48.5
Solyc01g005020.3 Solanum lycopersicum HOM05D003290 ORTHO05D003866 2.4e-57 226.9 337 48.4
Prupe.1G339200 Prunus persica HOM05D003290 ORTHO05D003866 3.2e-57 226.5 324 46.6
PGR142G0945 Punica granatum HOM05D003290 ORTHO05D003866 3.2e-57 226.5 328 46.6
Peaxi162Scf00349g00111 Petunia axillaris HOM05D003290 ORTHO05D003866 4.2e-57 226.1 324 48.8
Nn4g24593 Nelumbo nucifera HOM05D003290 ORTHO05D003866 5.4e-57 225.7 319 48.6
PGSC0003DMG400022786 Solanum tuberosum HOM05D003290 ORTHO05D003866 5.4e-57 225.7 343 45.8
SGA_v2.0_scaffold348G49593 Striga asiatica HOM05D003290 ORTHO05D003866 5.4e-57 225.7 341 46.9
QL03p039662 Quercus lobata HOM05D003290 ORTHO05D003866 7.1e-57 225.3 348 44.8
Sopen01g001090 Solanum pennellii HOM05D003290 ORTHO05D003866 9.3e-57 224.9 337 47.8
Dinv02702 Davidia involucrata HOM05D003290 ORTHO05D003866 1.2e-56 224.6 329 47.1
Thecc.02G301400 Theobroma cacao HOM05D003290 ORTHO05D003866 1.2e-56 224.6 339 45.4
COL.COLO4_27555 Corchorus olitorius HOM05D003290 ORTHO05D003866 1.6e-56 224.2 328 47.9
Potri.010G100900 Populus trichocarpa HOM05D003290 ORTHO05D003866 1.6e-56 224.2 329 45.9
Atru.chr11.983 Acer truncatum HOM05D003290 ORTHO05D003866 3.5e-56 223.0 332 47.0
CiPaw.05G160000 Carya illinoinensis HOM05D003290 ORTHO05D003866 3.5e-56 223.0 337 43.3
AUR62003491 Chenopodium quinoa HOM05D003290 ORTHO05D003866 3.5e-56 223.0 316 48.7
AUR62017800 Chenopodium quinoa HOM05D003290 ORTHO05D003866 3.5e-56 223.0 316 48.7
MELO3C005228.2 Cucumis melo HOM05D003290 ORTHO05D003866 3.5e-56 223.0 330 45.5
RcHm_v2.0_Chr4g0445491 Rosa chinensis HOM05D003290 ORTHO05D003866 4.6e-56 222.6 324 47.2
CSS0011262 Camellia sinensis var. sinensis HOM05D003290 ORTHO05D003866 1.3e-55 221.1 322 46.3
Rhsim09G0082800 Rhododendron simsii HOM05D003290 ORTHO05D003866 1.7e-55 220.7 350 46.6
ClCG01G006860 Citrullus lanatus HOM05D003290 ORTHO05D003866 2.3e-55 220.3 329 44.7
CsaV3_5G017250 Cucumis sativus L. HOM05D003290 ORTHO05D003866 2.3e-55 220.3 330 44.8
Sabra08G0106800 Salix brachista HOM05D003290 ORTHO05D003866 2.3e-55 220.3 324 46.0
Gohir.A03G113800 Gossypium hirsutum HOM05D003290 ORTHO05D003866 3.9e-55 219.5 334 44.6
Actinidia12429 Actinidia chinensis HOM05D003290 ORTHO05D003866 8.7e-55 218.4 329 45.6
ECA234G2339 Erigeron canadensis HOM05D003290 ORTHO05D003866 8.7e-55 218.4 328 45.1
Potri.008G140700 Populus trichocarpa HOM05D003290 ORTHO05D003866 8.7e-55 218.4 340 44.4
Sed0007344 Sechium edule HOM05D003290 ORTHO05D003866 8.7e-55 218.4 330 44.5
Manes.15G139900 Manihot esculenta HOM05D003290 ORTHO05D003866 1.1e-54 218.0 341 44.9
TWI74G0523 Tripterygium wilfordii HOM05D003290 ORTHO05D003866 1.9e-54 217.2 355 43.9
Ah.03g147350 Amaranthus hybridus HOM05D003290 ORTHO05D003866 2.5e-54 216.9 332 44.9
Lalb_Chr13g0293001 Lupinus albus HOM05D003290 ORTHO05D003866 2.5e-54 216.9 350 44.0
Gohir.D02G138100 Gossypium hirsutum HOM05D003290 ORTHO05D003866 5.6e-54 215.7 334 44.0
Gorai.005G154600 Gossypium raimondii HOM05D003290 ORTHO05D003866 7.3e-54 215.3 334 44.0
TPR.G11847 Trifolium pratense HOM05D003290 ORTHO05D003866 9.6e-54 214.9 323 44.9
VMungo0251G2069 Vigna mungo HOM05D003290 ORTHO05D003866 1.6e-53 214.2 322 44.7
TWI56G1413 Tripterygium wilfordii HOM05D003290 ORTHO05D003866 2.8e-53 213.4 325 45.8
Manes.17G091100 Manihot esculenta HOM05D003290 ORTHO05D003866 3.6e-53 213.0 342 43.6
Phvul.002G185150 Phaseolus vulgaris HOM05D003290 ORTHO05D003866 4.8e-53 212.6 318 44.7
Glyma.08G092000 Glycine max HOM05D003290 ORTHO05D003866 6.2e-53 212.2 316 45.3
arahy.Tifrunner.gnm1.ann1.4ZG746 Arachis hypogaea HOM05D003290 ORTHO05D003866 8.1e-53 211.8 313 47.3
Lj4g0019755 Lotus japonicus HOM05D003290 ORTHO05D003866 1.1e-52 211.5 322 43.8
TAR629G1764 Trochodendron aralioides HOM05D003290 ORTHO05D003866 1.1e-52 211.5 319 46.1
DCAR_030316 Daucus carota HOM05D003290 ORTHO05D003866 1.8e-52 210.7 341 44.3
Psat7g085560 Pisum sativum HOM05D003290 ORTHO05D003866 2.4e-52 210.3 354 43.8
THA.LOC104805106 Tarenaya hassleriana HOM05D003290 ORTHO05D003866 2.4e-52 210.3 357 42.9
MD16G1011500 Malus domestica HOM05D003290 ORTHO05D003866 5.3e-52 209.1 330 44.5
Ca_18198_v3 Cicer arietinum L. HOM05D003290 ORTHO05D003866 9.0e-52 208.4 317 45.1
Duzib268G0109 Durio zibethinus HOM05D003290 ORTHO05D003866 9.0e-52 208.4 333 44.7
FAN12G1356 Fragaria x ananassa HOM05D003290 ORTHO05D003866 9.0e-52 208.4 330 45.5
Nitab4.5_0007122g0010 Nicotiana tabacum HOM05D003290 ORTHO05D003866 2.0e-51 207.2 341 44.3
CDE06G1581 Ceratophyllum demersum HOM05D003290 ORTHO05D003866 3.4e-51 206.5 329 42.2
FvH4_4g35880 Fragaria vesca HOM05D003290 ORTHO05D003866 3.4e-51 206.5 330 46.1
Lj4g0008630 Lotus japonicus HOM05D003290 ORTHO05D003866 3.4e-51 206.5 324 43.5
Thhalv10003547m.g Eutrema salsugineum HOM05D003290 ORTHO05D003866 5.8e-51 205.7 332 43.4
AL5G11170 Arabidopsis lyrata HOM05D003290 ORTHO05D003866 7.6e-51 205.3 336 44.9
BcaB07g30722 Brassica carinata HOM05D003290 ORTHO05D003866 7.6e-51 205.3 334 42.8
BcaC04g21541 Brassica carinata HOM05D003290 ORTHO05D003866 7.6e-51 205.3 333 43.2
C09p30540 Brassica napus HOM05D003290 ORTHO05D003866 7.6e-51 205.3 333 43.2
vmacro10755 Vaccinium macrocarpon HOM05D003290 ORTHO05D003866 7.6e-51 205.3 418 40.7
EL10Ac6g15381 Beta vulgaris HOM05D003290 ORTHO05D003866 9.9e-51 204.9 337 43.0
Carub.0005s0099 Capsella rubella HOM05D003290 ORTHO05D003866 9.9e-51 204.9 345 43.2
A09p23700 Brassica napus HOM05D003290 ORTHO05D003866 1.3e-50 204.5 347 42.4
BolC9t55917H Brassica oleracea HOM05D003290 ORTHO05D003866 1.3e-50 204.5 347 42.4
BraA09t37969Z Brassica rapa HOM05D003290 ORTHO05D003866 1.3e-50 204.5 347 42.4
AT2G01980 Arabidopsis thaliana HOM05D003290 ORTHO05D003866 2.9e-50 203.4 339 43.1
Aqoxy3G04046 Aquilegia oxysepala HOM05D003290 ORTHO05D003866 3.8e-50 203.0 337 41.5
arahy.Tifrunner.gnm1.ann1.P8F85A Arachis hypogaea HOM05D003290 ORTHO05D003866 3.8e-50 203.0 313 47.0
HPP92_016411 Vanilla planifolia HOM05D003290 ORTHO05D003866 3.8e-50 203.0 325 42.8
Sp2g13410 Schrenkiella parvula HOM05D003290 ORTHO05D003866 8.4e-50 201.8 333 42.3
arahy.Tifrunner.gnm1.ann1.GST19D Arachis hypogaea HOM05D003290 ORTHO05D003866 1.4e-49 201.1 313 46.6
PSO017G1263 Papaver somniferum HOM05D003290 ORTHO05D003866 2.4e-49 200.3 322 41.3
Os12g0641100 Oryza sativa ssp. japonica HOM05D003290 ORTHO05D003866 7.1e-49 198.7 323 41.5
Aa31LG2G7940 Aethionema arabicum HOM05D003290 ORTHO05D003866 1.6e-48 197.6 336 42.3
ATR0598G076 Amborella trichopoda HOM05D003290 ORTHO05D003866 2.1e-48 197.2 327 41.9
PSO729G0139 Papaver somniferum HOM05D003290 ORTHO05D003866 4.6e-48 196.1 322 40.4
FvH4_4g35890 Fragaria vesca HOM05D003290 ORTHO05D003866 3.0e-47 193.4 340 40.6
Lsat_1_v5_gn_6_55260 Lactuca sativa HOM05D003290 ORTHO05D003866 6.7e-47 192.2 338 40.2
ECA246G3356 Erigeron canadensis HOM05D003290 ORTHO05D003866 1.1e-46 191.4 317 43.2
PSO170G2638 Papaver somniferum HOM05D003290 ORTHO05D003866 1.5e-46 191.0 333 38.1
BraA06t24252Z Brassica rapa HOM05D003290 ORTHO05D003866 1.9e-46 190.7 327 40.4
BcaB02g06535 Brassica carinata HOM05D003290 ORTHO05D003866 2.8e-45 186.8 328 41.2
CARHR015160 Cardamine hirsuta HOM05D003290 ORTHO05D003866 4.8e-45 186.0 319 41.1
BcaC05g25383 Brassica carinata HOM05D003290 ORTHO05D003866 6.2e-45 185.7 327 39.8
Thhalv10006906m.g Eutrema salsugineum HOM05D003290 ORTHO05D003866 8.1e-45 185.3 321 40.8
HanXRQChr12g0381631 Helianthus annuus HOM05D003290 ORTHO05D003866 8.1e-45 185.3 315 43.8
MBI13_g17879_MAGBIO Magnolia biondii HOM05D003290 ORTHO05D003866 8.1e-45 185.3 309 41.7
C05p12620 Brassica napus HOM05D003290 ORTHO05D003866 1.1e-44 184.9 327 39.8
BolC5t30005H Brassica oleracea HOM05D003290 ORTHO05D003866 1.1e-44 184.9 327 39.8
Carub.0001s1442 Capsella rubella HOM05D003290 ORTHO05D003866 1.1e-44 184.9 334 39.8
AL1G26630 Arabidopsis lyrata HOM05D003290 ORTHO05D003866 1.4e-44 184.5 320 41.6
Cc11_g05280 Coffea canephora HOM05D003290 ORTHO05D003866 3.1e-44 183.3 120 80.0
PSO339G1388 Papaver somniferum HOM05D003290 ORTHO05D003866 1.5e-43 181.0 342 38.3
AT1G14660 Arabidopsis thaliana HOM05D003290 ORTHO05D003866 2.0e-43 180.6 320 40.6
Sp1g13030 Schrenkiella parvula HOM05D003290 ORTHO05D003866 2.0e-43 180.6 334 39.2
Sp1g13020 Schrenkiella parvula HOM05D003290 ORTHO05D003866 4.5e-43 179.5 315 41.0
Mapoly0062s0025 Marchantia polymorpha HOM05D003290 ORTHO05D003866 1.0e-42 178.3 328 38.7
Aqoxy4G00109 Aquilegia oxysepala HOM05D003290 ORTHO05D003866 3.2e-41 173.3 349 37.5
unitig_27.g25301 Utricularia gibba HOM05D003290 ORTHO05D003866 4.2e-41 172.9 305 43.3
Nitab4.5_0001529g0050 Nicotiana tabacum HOM05D003290 ORTHO05D003866 1.6e-40 171.0 176 58.0
FAN22G1284 Fragaria x ananassa HOM05D003290 ORTHO05D003866 3.5e-40 169.9 330 41.5
Mapoly0206s0002 Marchantia polymorpha HOM05D003290 ORTHO05D003866 4.6e-40 169.5 326 38.0
Pp3c16_14280 Physcomitrium patens HOM05D003290 ORTHO05D003866 4.6e-40 169.5 319 38.6
PSO170G6380 Papaver somniferum HOM05D003290 ORTHO05D003866 1.3e-39 167.9 302 39.4
AagrBONN_evm.TU.Sc2ySwM_368.1085 Anthoceros agrestis HOM05D003290 ORTHO05D003866 2.3e-39 167.2 317 37.2
Sc03g0005950 Simmondsia chinensis HOM05D003290 ORTHO05D003866 1.5e-38 164.5 171 56.7
Pp3c22_9570 Physcomitrium patens HOM05D003290 ORTHO05D003866 1.3e-37 161.4 326 38.0
AagrBONN_evm.TU.Sc2ySwM_344.5331 Anthoceros agrestis HOM05D003290 ORTHO05D003866 6.2e-37 159.1 322 36.0
PGR102G1943 Punica granatum HOM05D003290 ORTHO05D003866 4.1e-36 156.4 313 37.1
FAN07G0883 Fragaria x ananassa HOM05D003290 ORTHO05D003866 2.0e-35 154.1 323 38.7
Sopen04g009310 Solanum pennellii HOM05D003290 ORTHO05D003866 2.0e-35 154.1 322 36.0
SMO367G0872 Selaginella moellendorffii HOM05D003290 ORTHO05D003866 3.4e-35 153.3 318 36.2
BcaC05g25381 Brassica carinata HOM05D003290 ORTHO05D003866 1.0e-34 151.8 95 77.9
SMO367G0300 Selaginella moellendorffii HOM05D003290 ORTHO05D003866 2.2e-34 150.6 321 33.6
Lj6C728G5 Lonicera japonica HOM05D003290 ORTHO05D003866 5.0e-34 149.4 275 43.6
A06p10720 Brassica napus HOM05D003290 ORTHO05D003866 1.9e-33 147.5 101 71.3
unitig_699.g19544 Utricularia gibba HOM05D003290 ORTHO05D003866 4.2e-33 146.4 177 52.5
Aa31LG2G2650 Aethionema arabicum HOM05D003290 ORTHO05D003866 5.1e-31 139.4 114 64.9
Solyc04g018090.2 Solanum lycopersicum HOM05D003290 ORTHO05D003866 1.1e-30 138.3 170 46.5
Actinidia37492 Actinidia chinensis HOM05D003290 ORTHO05D003866 4.3e-30 136.3 83 80.7
SEGI_29378 Sequoiadendron giganteum HOM05D003290 ORTHO05D003866 4.8e-29 132.9 92 68.5
CAN.G1237.29 Capsicum annuum HOM05D003290 ORTHO05D003866 1.2e-27 128.3 323 33.4
Nitab4.5_0005031g0060 Nicotiana tabacum HOM05D003290 ORTHO05D003866 1.7e-26 124.4 169 43.8
MD13G1014200 Malus domestica HOM05D003290 ORTHO05D003866 4.2e-25 119.8 338 34.9
SHI04223 Sapria himalayana HOM05D003290 ORTHO05D003866 6.7e-23 112.5 101 64.4
Cpa.g.sc2.63 Carica papaya HOM05D003290 ORTHO05D003866 2.5e-22 110.5 261 36.4
MBI13_g26466_MAGBIO Magnolia biondii HOM05D003290 ORTHO05D003866 5.9e-19 99.4 168 44.0
MCO04G150 Micromonas commoda HOM05D003290 ORTHO05D003866 1.9e-17 94.4 320 29.4
BolC3t21144H Brassica oleracea HOM05D003439 ORTHO05D004062 3.0e-15 87.0 70 62.9
Nitab4.5_0009873g0010 Nicotiana tabacum HOM05D003290 ORTHO05D003866 6.7e-15 85.9 336 28.3
QL03p039637 Quercus lobata HOM05D003290 ORTHO05D003866 2.0e-14 84.3 83 55.4
Peaxi162Scf00130g01212 Petunia axillaris HOM05D003290 ORTHO05D003866 2.2e-13 80.9 122 42.6
Cc11_g05270 Coffea canephora HOM05D003290 ORTHO05D003866 3.1e-12 77.0 163 38.7
Hma1.2p1_0197F.1_g085160 Hydrangea macrophylla HOM05D003290 ORTHO05D003866 3.1e-12 77.0 47 83.0
FAN22G1869 Fragaria x ananassa HOM05D003290 ORTHO05D003866 5.3e-12 76.3 50 74.0
Eucgr.G02062 Eucalyptus grandis HOM05D003290 ORTHO05D003866 7.0e-12 75.9 85 49.4
Haze_10796 Corylus avellana HOM05D003290 ORTHO05D003866 2.0e-11 74.3 43 76.7
Zm00001eb033240 Zea mays HOM05D003290 ORTHO05D003866 5.9e-11 72.8 85 48.2
Hma1.2p1_0197F.1_g085170 Hydrangea macrophylla HOM05D003290 ORTHO05D003866 2.2e-10 70.9 163 36.2
A06p10710 Brassica napus HOM05D003290 ORTHO05D003866 6.5e-10 69.3 81 48.1
Sp1g13040 Schrenkiella parvula HOM05D003290 ORTHO05D003866 2.5e-09 67.4 85 47.1
AL1G48790 Arabidopsis lyrata HOM05D003290 ORTHO05D003866 4.7e-08 63.2 42 69.0


User provided reference genes

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