Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu005264.1 Olea europaea HOM05D000379 ORTHO05D000254 2.4e-48 195.3 104 100.0
Oeu037688.1 Olea europaea HOM05D000379 ORTHO05D000254 2.4e-24 115.5 73 84.9
Rhsim02G0020700 Rhododendron simsii HOM05D000379 ORTHO05D000254 8.4e-22 107.1 73 79.5
MD16G1185600 Malus domestica HOM05D000379 ORTHO05D000254 1.1e-21 106.7 100 60.0
Prupe.1G152300 Prunus persica HOM05D000379 ORTHO05D000254 1.9e-21 105.9 96 61.5
Actinidia36993 Actinidia chinensis HOM05D000379 ORTHO05D000254 3.2e-21 105.1 86 70.9
vmacro15312 Vaccinium macrocarpon HOM05D000379 ORTHO05D000254 5.5e-21 104.4 73 76.7
FvH4_4g14730 Fragaria vesca HOM05D000379 ORTHO05D000254 1.2e-20 103.2 100 60.0
FAN12G2360 Fragaria x ananassa HOM05D000379 ORTHO05D000254 1.2e-20 103.2 100 60.0
FAN07G1712 Fragaria x ananassa HOM05D000379 ORTHO05D000254 1.6e-20 102.8 77 68.8
FAN17G1236 Fragaria x ananassa HOM05D000379 ORTHO05D000254 1.6e-20 102.8 77 68.8
Hma1.2p1_0995F.1_g245830 Hydrangea macrophylla HOM05D000379 ORTHO05D000254 1.6e-20 102.8 99 59.6
RcHm_v2.0_Chr4g0417871 Rosa chinensis HOM05D000379 ORTHO05D000254 2.7e-20 102.1 100 55.0
Potri.008G203300 Populus trichocarpa HOM05D000379 ORTHO05D000254 4.6e-20 101.3 95 55.8
Aqoxy2G03279 Aquilegia oxysepala HOM05D000379 ORTHO05D000254 6.1e-20 100.9 85 63.5
FAN22G1883 Fragaria x ananassa HOM05D000379 ORTHO05D000254 6.1e-20 100.9 77 67.5
Lj3C715G10 Lonicera japonica HOM05D000379 ORTHO05D000254 6.1e-20 100.9 96 61.5
Solyc01g079890.3 Solanum lycopersicum HOM05D000379 ORTHO05D000254 6.1e-20 100.9 91 60.4
Sopen01g031650 Solanum pennellii HOM05D000379 ORTHO05D000254 6.1e-20 100.9 91 60.4
PGSC0003DMG400034503 Solanum tuberosum HOM05D000379 ORTHO05D000254 6.1e-20 100.9 91 60.4
CAN.G38.2 Capsicum annuum HOM05D000379 ORTHO05D000254 7.9e-20 100.5 94 57.4
Migut.G00298 Erythranthe guttata HOM05D000379 ORTHO05D000254 1.8e-19 99.4 86 66.3
Peaxi162Scf00196g00058 Petunia axillaris HOM05D000379 ORTHO05D000254 1.8e-19 99.4 98 54.1
DCAR_027164 Daucus carota HOM05D000379 ORTHO05D000254 3.0e-19 98.6 86 61.6
Actinidia08513 Actinidia chinensis HOM05D000379 ORTHO05D000254 3.9e-19 98.2 86 64.0
Cc03_g03200 Coffea canephora HOM05D000379 ORTHO05D000254 6.7e-19 97.4 81 64.2
Sabra08G0158200 Salix brachista HOM05D000379 ORTHO05D000254 1.1e-18 96.7 95 53.7
TAR633G1791 Trochodendron aralioides HOM05D002900 ORTHO05D003238 2.5e-18 95.5 86 62.8
Cfa015592 Carpinus fangiana HOM05D000379 ORTHO05D000254 3.3e-18 95.1 100 59.0
Ca_09703_v3 Cicer arietinum L. HOM05D000856 ORTHO05D002253 3.3e-18 95.1 99 57.6
SalBow2G2140 Salvia bowleyana HOM05D000379 ORTHO05D000254 3.3e-18 95.1 86 62.8
Dinv38401 Davidia involucrata HOM05D000379 ORTHO05D000254 4.3e-18 94.7 73 68.5
CiPaw.01G160900 Carya illinoinensis HOM05D000379 ORTHO05D000254 5.7e-18 94.4 88 61.4
Psat6g056440 Pisum sativum HOM05D000856 ORTHO05D002253 7.4e-18 94.0 97 56.7
QL06p003947 Quercus lobata HOM05D000379 ORTHO05D000254 7.4e-18 94.0 96 57.3
Medtr1g070385 Medicago truncatula HOM05D000856 ORTHO05D002253 1.3e-17 93.2 99 55.6
Atru.chr4.2549 Acer truncatum HOM05D000379 ORTHO05D000254 4.8e-17 91.3 83 61.4
Dinv44486 Davidia involucrata HOM05D000379 ORTHO05D000254 4.8e-17 91.3 96 57.3
Lalb_Chr21g0306231 Lupinus albus HOM05D000379 ORTHO05D000254 4.8e-17 91.3 77 66.2
Nitab4.5_0007039g0010 Nicotiana tabacum HOM05D000379 ORTHO05D000254 1.1e-16 90.1 90 61.1
Lj5g0021484 Lotus japonicus HOM05D000856 ORTHO05D002253 1.4e-16 89.7 77 66.2
Nn1g02176 Nelumbo nucifera HOM05D000379 ORTHO05D000254 1.4e-16 89.7 77 59.7
Cpa.g.sc147.2 Carica papaya HOM05D000379 ORTHO05D000254 1.8e-16 89.4 72 68.1
arahy.Tifrunner.gnm1.ann1.KTZ8QC Arachis hypogaea HOM05D000856 ORTHO05D002253 2.4e-16 89.0 95 56.8
Glyma.02G140500 Glycine max HOM05D000379 ORTHO05D000254 2.4e-16 89.0 99 53.5
Manes.03G183400 Manihot esculenta HOM05D000379 ORTHO05D000254 2.4e-16 89.0 77 61.0
Phvul.007G178300 Phaseolus vulgaris HOM05D000379 ORTHO05D000254 2.4e-16 89.0 98 55.1
COL.COLO4_26622 Corchorus olitorius HOM05D000379 ORTHO05D000254 4.1e-16 88.2 87 56.3
GSVIVG01017896001 Vitis vinifera HOM05D000379 ORTHO05D000254 4.1e-16 88.2 77 61.0
ECA240G1115 Erigeron canadensis HOM05D000379 ORTHO05D000254 5.3e-16 87.8 95 54.7
PGR004G1294 Punica granatum HOM05D000379 ORTHO05D000254 6.9e-16 87.4 77 61.0
Ciclev10005554m.g Citrus clementina HOM05D000379 ORTHO05D000254 9.0e-16 87.0 77 63.6
Eucgr.H03586 Eucalyptus grandis HOM05D000379 ORTHO05D000254 9.0e-16 87.0 77 58.4
TWI09G0889 Tripterygium wilfordii HOM05D000379 ORTHO05D000254 9.0e-16 87.0 77 63.6
Duzib150G1186 Durio zibethinus HOM05D000379 ORTHO05D000254 1.2e-15 86.7 73 64.4
Nitab4.5_0002600g0020 Nicotiana tabacum HOM05D000379 ORTHO05D000254 1.2e-15 86.7 78 64.1
TPR.G27283 Trifolium pratense HOM05D000379 ORTHO05D000254 1.5e-15 86.3 78 65.4
PSO151G0227 Papaver somniferum HOM05D000379 ORTHO05D000254 2.0e-15 85.9 92 51.1
PSO339G2777 Papaver somniferum HOM05D000379 ORTHO05D000254 2.0e-15 85.9 92 51.1
Lsat_1_v5_gn_7_68000 Lactuca sativa HOM05D000379 ORTHO05D000254 2.6e-15 85.5 94 56.4
HanXRQChr09g0247761 Helianthus annuus HOM05D000379 ORTHO05D000254 4.5e-15 84.7 80 62.5
Lj6A575G20 Lonicera japonica HOM05D000379 ORTHO05D000254 4.5e-15 84.7 73 63.0
arahy.Tifrunner.gnm1.ann1.IG2SMP Arachis hypogaea HOM05D000379 ORTHO05D000254 7.7e-15 84.0 73 64.4
Carub.0003s0554 Capsella rubella HOM05D000379 ORTHO05D000254 7.7e-15 84.0 73 58.9
SEGI_12032 Sequoiadendron giganteum HOM05D000379 ORTHO05D000254 7.7e-15 84.0 73 58.9
Sp3g05050 Schrenkiella parvula HOM05D000379 ORTHO05D000254 1.0e-14 83.6 77 57.1
BcaC05g30057 Brassica carinata HOM05D000379 ORTHO05D000254 1.3e-14 83.2 77 57.1
A05p41900 Brassica napus HOM05D000379 ORTHO05D000254 1.3e-14 83.2 77 57.1
C05p61150 Brassica napus HOM05D000379 ORTHO05D000254 1.3e-14 83.2 77 57.1
BolC5t34774H Brassica oleracea HOM05D000379 ORTHO05D000254 1.3e-14 83.2 77 57.1
VMungo0720G3001 Vigna mungo HOM05D000379 ORTHO05D000254 1.3e-14 83.2 77 62.3
AL3G16940 Arabidopsis lyrata HOM05D000379 ORTHO05D000254 1.7e-14 82.8 77 57.1
CARHR080610 Cardamine hirsuta HOM05D000379 ORTHO05D000254 1.7e-14 82.8 77 57.1
Thecc.04G223600 Theobroma cacao HOM05D000379 ORTHO05D000254 1.7e-14 82.8 85 56.5
Thhalv10021311m.g Eutrema salsugineum HOM05D000379 ORTHO05D000254 2.2e-14 82.4 77 54.5
Gohir.A09G213678 Gossypium hirsutum HOM05D000379 ORTHO05D000254 2.2e-14 82.4 96 53.1
Gohir.D09G215800 Gossypium hirsutum HOM05D000379 ORTHO05D000254 2.2e-14 82.4 96 53.1
Gorai.006G236300 Gossypium raimondii HOM05D000379 ORTHO05D000254 2.2e-14 82.4 96 53.1
AT3G06100 Arabidopsis thaliana HOM05D000379 ORTHO05D000254 2.9e-14 82.0 77 55.8
MBI17_g37160_MAGBIO Magnolia biondii HOM05D000379 ORTHO05D000254 2.9e-14 82.0 85 50.6
AUR62038055 Chenopodium quinoa HOM05D000379 ORTHO05D000254 3.8e-14 81.6 71 60.6
AUR62038181 Chenopodium quinoa HOM05D000379 ORTHO05D000254 3.8e-14 81.6 71 60.6
THA.LOC104818799 Tarenaya hassleriana HOM05D000379 ORTHO05D000254 3.8e-14 81.6 77 54.5
EL10Ac3g06394 Beta vulgaris HOM05D000379 ORTHO05D000254 5.0e-14 81.3 76 59.2
Gohir.A09G055600 Gossypium hirsutum HOM05D000379 ORTHO05D000254 5.0e-14 81.3 73 58.9
Ah.13g074130 Amaranthus hybridus HOM05D000379 ORTHO05D000254 6.5e-14 80.9 88 51.1
Gohir.D09G054500 Gossypium hirsutum HOM05D000379 ORTHO05D000254 1.9e-13 79.3 73 57.5
Gorai.006G052300 Gossypium raimondii HOM05D000379 ORTHO05D000254 9.4e-13 77.0 72 58.3
Aa31LG5G16580 Aethionema arabicum HOM05D000379 ORTHO05D000254 2.7e-12 75.5 77 55.8
SGA_v2.0_scaffold39G15327 Striga asiatica HOM05D000379 ORTHO05D000254 1.5e-10 69.7 78 56.4
ClCG05G005390 Citrullus lanatus HOM05D000379 ORTHO05D000254 2.5e-10 68.9 98 44.9
arahy.Tifrunner.gnm1.ann1.4EA0CW Arachis hypogaea HOM05D000379 ORTHO05D000254 5.7e-10 67.8 83 54.2
CsaV3_3G013640 Cucumis sativus L. HOM05D000379 ORTHO05D000254 1.3e-09 66.6 86 44.2
Sed0022334 Sechium edule HOM05D000379 ORTHO05D000254 1.7e-09 66.2 80 50.0
MELO3C006559.2 Cucumis melo HOM05D000379 ORTHO05D000254 2.2e-09 65.9 86 44.2
SMO116G0441 Selaginella moellendorffii HOM05D000379 ORTHO05D000254 4.8e-09 64.7 73 45.2
Os05g0205050 Oryza sativa ssp. japonica HOM05D000379 ORTHO05D000254 2.0e-07 59.3 73 47.9
HanXRQChr10g0288151 Helianthus annuus HOM05D000379 ORTHO05D000254 7.7e-07 57.4 73 42.5
Pp3c15_12660 Physcomitrium patens HOM05D000379 ORTHO05D000254 7.7e-07 57.4 73 43.8
GSVIVG01030857001 Vitis vinifera HOM05D000379 ORTHO05D000254 7.7e-07 57.4 89 43.8
HanXRQChr10g0312221 Helianthus annuus HOM05D000379 ORTHO05D000254 1.0e-06 57.0 73 41.1
MELO3C009871.2 Cucumis melo HOM05D000379 ORTHO05D000254 1.3e-06 56.6 73 42.5
HanXRQChr10g0288141 Helianthus annuus HOM05D000379 ORTHO05D000254 2.2e-06 55.8 73 41.1
HanXRQChr15g0473241 Helianthus annuus HOM05D000379 ORTHO05D000254 2.9e-06 55.5 73 43.8
Lsat_1_v5_gn_3_99980 Lactuca sativa HOM05D000379 ORTHO05D000254 2.9e-06 55.5 73 42.5
Lj5g0019323 Lotus japonicus HOM05D000379 ORTHO05D000254 2.9e-06 55.5 82 47.6
Lalb_Chr06g0161761 Lupinus albus HOM05D000379 ORTHO05D000254 2.9e-06 55.5 73 49.3
HanXRQChr15g0473931 Helianthus annuus HOM05D000379 ORTHO05D000254 3.8e-06 55.1 77 41.6
arahy.Tifrunner.gnm1.ann1.W3BAYH Arachis hypogaea HOM05D000379 ORTHO05D000254 5.0e-06 54.7 73 43.8
Prupe.3G267200 Prunus persica HOM05D000379 ORTHO05D000254 5.0e-06 54.7 73 41.1
Zm00001eb283960 Zea mays HOM05D000379 ORTHO05D000254 5.0e-06 54.7 81 44.4
Carub.0007s2228 Capsella rubella HOM05D000379 ORTHO05D000254 6.5e-06 54.3 73 46.6
COL.COLO4_33311 Corchorus olitorius HOM05D000379 ORTHO05D000254 6.5e-06 54.3 76 38.2
DCAR_027966 Daucus carota HOM05D000379 ORTHO05D000254 6.5e-06 54.3 37 67.6
Duzib093G0251 Durio zibethinus HOM05D000379 ORTHO05D000254 6.5e-06 54.3 76 36.8
FAN09G4814 Fragaria x ananassa HOM05D000379 ORTHO05D000254 6.5e-06 54.3 73 42.5
HanXRQChr08g0229901 Helianthus annuus HOM05D000379 ORTHO05D000254 6.5e-06 54.3 73 41.1
Lj1g0017451 Lotus japonicus HOM05D000379 ORTHO05D000254 6.5e-06 54.3 76 42.1
PGR042G3606 Punica granatum HOM05D000379 ORTHO05D000254 6.5e-06 54.3 72 43.1
Hund15596 Selenicereus undatus HOM05D000379 ORTHO05D000254 6.5e-06 54.3 73 39.7
THA.LOC104824567 Tarenaya hassleriana HOM05D000379 ORTHO05D000254 6.5e-06 54.3 73 39.7
VMungo1080G1806 Vigna mungo HOM05D000379 ORTHO05D000254 6.5e-06 54.3 73 46.6
Actinidia39529 Actinidia chinensis HOM05D000379 ORTHO05D000254 8.5e-06 53.9 86 43.0
CsaV3_3G041470 Cucumis sativus L. HOM05D000379 ORTHO05D000254 8.5e-06 53.9 73 42.5
FvH4_6g48500 Fragaria vesca HOM05D000379 ORTHO05D000254 8.5e-06 53.9 73 41.1
FAN14G1092 Fragaria x ananassa HOM05D000379 ORTHO05D000254 8.5e-06 53.9 86 45.3
FAN14G4367 Fragaria x ananassa HOM05D000379 ORTHO05D000254 8.5e-06 53.9 73 41.1
Lsat_1_v5_gn_3_101560 Lactuca sativa HOM05D000379 ORTHO05D000254 8.5e-06 53.9 79 39.2
Nitab4.5_0002458g0030 Nicotiana tabacum HOM05D000379 ORTHO05D000254 8.5e-06 53.9 75 44.0


User provided reference genes

Program Settings