Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu005141.2 Olea europaea HOM05D006469 ORTHO05D008034 1.8e-187 659.1 319 100.0
Dinv33650 Davidia involucrata HOM05D006469 ORTHO05D008034 1.2e-106 390.6 316 62.3
SalBow5G1778 Salvia bowleyana HOM05D006469 ORTHO05D008034 2.6e-106 389.4 323 60.7
Migut.L00672 Erythranthe guttata HOM05D006469 ORTHO05D008034 7.6e-106 387.9 325 60.9
Migut.L00699 Erythranthe guttata HOM05D006469 ORTHO05D008034 8.4e-105 384.4 329 60.8
CAN.G1817.1 Capsicum annuum HOM05D006469 ORTHO05D008034 4.6e-103 378.6 320 59.1
Sopen03g006220 Solanum pennellii HOM05D006469 ORTHO05D008034 8.7e-102 374.4 324 59.0
Lj4A220G94 Lonicera japonica HOM05D006469 ORTHO05D008034 2.5e-101 372.9 320 60.0
MSTRG.3610 Avicennia marina HOM05D006469 ORTHO05D008034 5.6e-101 371.7 328 58.8
Solyc03g033470.3 Solanum lycopersicum HOM05D006469 ORTHO05D008034 5.6e-101 371.7 324 58.6
PGSC0003DMG402022530 Solanum tuberosum HOM05D006469 ORTHO05D008034 2.8e-100 369.4 324 58.0
Lsat_1_v5_gn_2_76041 Lactuca sativa HOM05D006469 ORTHO05D008034 1.1e-99 367.5 315 59.7
TAR376G0066 Trochodendron aralioides HOM05D006469 ORTHO05D008034 3.1e-99 365.9 318 60.4
Ciclev10026134m.g Citrus clementina HOM05D006469 ORTHO05D008034 1.5e-98 363.6 327 58.7
HanXRQChr04g0119941 Helianthus annuus HOM05D006469 ORTHO05D008034 2.0e-98 363.2 314 58.3
GSVIVG01018765001 Vitis vinifera HOM05D006469 ORTHO05D008034 7.6e-98 361.3 319 58.6
QL06p050760 Quercus lobata HOM05D006469 ORTHO05D008034 2.9e-97 359.4 324 55.9
Gohir.D03G008900 Gossypium hirsutum HOM05D006469 ORTHO05D008034 3.8e-97 359.0 324 57.4
Gorai.003G009100 Gossypium raimondii HOM05D006469 ORTHO05D008034 6.5e-97 358.2 324 57.7
RcHm_v2.0_Chr2g0099281 Rosa chinensis HOM05D006469 ORTHO05D008034 1.1e-96 357.5 312 58.3
Gohir.A02G171200 Gossypium hirsutum HOM05D006469 ORTHO05D008034 1.4e-96 357.1 329 57.1
QL06p050655 Quercus lobata HOM05D006469 ORTHO05D008034 2.5e-96 356.3 324 55.6
Potri.007G057000 Populus trichocarpa HOM05D006469 ORTHO05D008034 7.1e-96 354.8 321 55.5
FvH4_1g11701 Fragaria vesca HOM05D006469 ORTHO05D008034 9.3e-96 354.4 312 58.0
Manes.02G105600 Manihot esculenta HOM05D006469 ORTHO05D008034 4.6e-95 352.1 312 56.1
CsaV3_6G047220 Cucumis sativus L. HOM05D006469 ORTHO05D008034 4.3e-93 345.5 322 55.6
QL11p035074 Quercus lobata HOM05D006469 ORTHO05D008034 4.3e-93 345.5 377 48.8
MD02G1130100 Malus domestica HOM05D006469 ORTHO05D008034 1.3e-92 344.0 313 57.8
Nn6g32040 Nelumbo nucifera HOM05D006469 ORTHO05D008034 1.6e-92 343.6 321 56.1
SGA_v2.0_scaffold45G17085 Striga asiatica HOM05D006469 ORTHO05D008034 2.8e-92 342.8 398 48.0
Cc07_g10870 Coffea canephora HOM05D006469 ORTHO05D008034 3.7e-92 342.4 316 55.4
MELO3C007914.2 Cucumis melo HOM05D006469 ORTHO05D008034 4.8e-92 342.0 322 55.3
Thecc.01G016800 Theobroma cacao HOM05D006469 ORTHO05D008034 4.8e-92 342.0 319 57.1
Atru.chr3.815 Acer truncatum HOM05D006469 ORTHO05D008034 1.1e-91 340.9 321 56.7
Haze_03751 Corylus avellana HOM05D006469 ORTHO05D008034 1.4e-91 340.5 327 53.2
CANSAT25G3476 Cannabis sativa HOM05D006469 ORTHO05D008034 3.1e-91 339.3 330 55.2
CiPaw.07G059900 Carya illinoinensis HOM05D006469 ORTHO05D008034 4.1e-91 339.0 331 53.8
TPR.G24083 Trifolium pratense HOM05D006469 ORTHO05D008034 8.4e-89 331.3 317 54.3
Sp7g33770 Schrenkiella parvula HOM05D006469 ORTHO05D008034 1.1e-88 330.9 313 53.7
CARHR244380 Cardamine hirsuta HOM05D006469 ORTHO05D008034 3.2e-88 329.3 314 53.2
AT4G35987 Arabidopsis thaliana HOM05D006469 ORTHO05D008034 4.2e-88 328.9 313 53.7
ECA238G1797 Erigeron canadensis HOM05D006469 ORTHO05D008034 4.2e-88 328.9 325 52.9
FAN26G2561 Fragaria x ananassa HOM05D006469 ORTHO05D008034 5.5e-88 328.6 288 58.0
Thhalv10025786m.g Eutrema salsugineum HOM05D006469 ORTHO05D008034 7.2e-88 328.2 308 54.5
A01p02720 Brassica napus HOM05D006469 ORTHO05D008034 9.3e-88 327.8 313 53.0
AUR62029479 Chenopodium quinoa HOM05D006469 ORTHO05D008034 1.2e-87 327.4 321 53.0
CSS0000310 Camellia sinensis var. sinensis HOM05D006469 ORTHO05D008034 1.6e-87 327.0 307 56.7
Sc07g0001050 Simmondsia chinensis HOM05D006469 ORTHO05D008034 2.1e-87 326.6 313 53.0
arahy.Tifrunner.gnm1.ann1.DLPQ3A Arachis hypogaea HOM05D006469 ORTHO05D008034 3.5e-87 325.9 321 53.9
arahy.Tifrunner.gnm1.ann1.S7P5W6 Arachis hypogaea HOM05D006469 ORTHO05D008034 2.3e-86 323.2 321 53.9
EL10Ac6g15486 Beta vulgaris HOM05D006469 ORTHO05D008034 3.0e-86 322.8 315 54.3
BcaNung00773 Brassica carinata HOM05D006469 ORTHO05D008034 3.0e-86 322.8 314 53.2
CSS0021178 Camellia sinensis var. sinensis HOM05D006469 ORTHO05D008034 3.0e-86 322.8 307 56.4
BraA01t00258Z Brassica rapa HOM05D006469 ORTHO05D008034 6.7e-86 321.6 314 52.5
Aa31LG6G12960 Aethionema arabicum HOM05D006469 ORTHO05D008034 8.7e-86 321.2 309 53.7
Eucgr.I02338 Eucalyptus grandis HOM05D006469 ORTHO05D008034 1.9e-85 320.1 322 53.7
Phvul.003G263600 Phaseolus vulgaris HOM05D006469 ORTHO05D008034 1.9e-85 320.1 322 53.4
Psat4g100640 Pisum sativum HOM05D006469 ORTHO05D008034 3.3e-85 319.3 317 52.1
C01p03020 Brassica napus HOM05D006469 ORTHO05D008034 4.3e-85 318.9 314 52.2
TWI73G0981 Tripterygium wilfordii HOM05D006469 ORTHO05D008034 4.3e-85 318.9 331 50.8
BolC1t00288H Brassica oleracea HOM05D006469 ORTHO05D008034 9.7e-85 317.8 314 52.5
Hma1.2p1_0258F.1_g104050 Hydrangea macrophylla HOM05D006469 ORTHO05D008034 9.7e-85 317.8 245 62.4
Medtr8g075480 Medicago truncatula HOM05D006469 ORTHO05D008034 9.7e-85 317.8 323 51.1
Lj4g0017154 Lotus japonicus HOM05D006469 ORTHO05D008034 1.3e-84 317.4 318 53.1
PSO170G4882 Papaver somniferum HOM05D006469 ORTHO05D008034 1.3e-84 317.4 319 54.2
Lalb_Chr05g0229831 Lupinus albus HOM05D006469 ORTHO05D008034 1.6e-84 317.0 314 54.1
FAN19G1692 Fragaria x ananassa HOM05D006469 ORTHO05D008034 1.4e-83 313.9 321 53.3
Hma1.2p1_0258F.1_g104040 Hydrangea macrophylla HOM05D006469 ORTHO05D008034 3.1e-83 312.8 196 71.4
Cfa006983 Carpinus fangiana HOM05D006469 ORTHO05D008034 2.6e-82 309.7 325 48.9
PGR102G1692 Punica granatum HOM05D006469 ORTHO05D008034 2.6e-82 309.7 325 52.3
Glyma.02G047300 Glycine max HOM05D006469 ORTHO05D008034 2.9e-81 306.2 320 52.8
Aqoxy5G01802 Aquilegia oxysepala HOM05D006469 ORTHO05D008034 6.5e-81 305.1 311 51.1
VMungo0251G1912 Vigna mungo HOM05D006469 ORTHO05D008034 1.6e-79 300.4 350 48.9
PSO700G0153 Papaver somniferum HOM05D006469 ORTHO05D008034 4.6e-79 298.9 279 54.8
CANSAT25G3534 Cannabis sativa HOM05D006469 ORTHO05D008034 6.7e-78 295.0 296 55.1
Zm00001eb398850 Zea mays HOM05D006469 ORTHO05D008034 4.8e-76 288.9 338 47.0
Carub.0007s0423 Capsella rubella HOM05D006469 ORTHO05D008034 5.3e-75 285.4 309 50.2
Os03g0243800 Oryza sativa ssp. japonica HOM05D006469 ORTHO05D008034 6.9e-75 285.0 322 46.9
Actinidia22967 Actinidia chinensis HOM05D006469 ORTHO05D008034 4.5e-74 282.3 292 50.7
Nitab4.5_0003548g0050 Nicotiana tabacum HOM05D006469 ORTHO05D008034 5.5e-72 275.4 284 51.8
AUR62003357 Chenopodium quinoa HOM05D006469 ORTHO05D008034 1.2e-71 274.2 218 60.6
Sed0020941 Sechium edule HOM05D006469 ORTHO05D008034 3.6e-71 272.7 195 63.6
THA.LOC104807502 Tarenaya hassleriana HOM05D006469 ORTHO05D008034 1.0e-70 271.2 195 61.5
MBI05_g33508_MAGBIO Magnolia biondii HOM05D006469 ORTHO05D008034 6.7e-70 268.5 196 61.7
Hund14051 Selenicereus undatus HOM05D006469 ORTHO05D008034 1.1e-69 267.7 396 41.9
Ca_22385_v3 Cicer arietinum L. HOM05D006469 ORTHO05D008034 3.3e-69 266.2 195 64.6
Nitab4.5_0000864g0140 Nicotiana tabacum HOM05D006469 ORTHO05D008034 4.4e-69 265.8 350 46.0
DCAR_021507 Daucus carota HOM05D006469 ORTHO05D008034 1.9e-64 250.4 306 46.7
Mapoly0087s0053 Marchantia polymorpha HOM05D006469 ORTHO05D008034 1.2e-58 231.1 319 38.9
Nitab4.5_0008011g0040 Nicotiana tabacum HOM05D006469 ORTHO05D008034 1.2e-58 231.1 349 41.8
Duzib147G1015 Durio zibethinus HOM05D006469 ORTHO05D008034 2.2e-57 226.9 320 41.2
Pp3c16_25190 Physcomitrium patens HOM05D006469 ORTHO05D008034 2.2e-57 226.9 326 39.3
Peaxi162Scf00328g00828 Petunia axillaris HOM05D006469 ORTHO05D008034 4.2e-56 222.6 368 38.9
Sabra07G0048900 Salix brachista HOM05D006469 ORTHO05D008034 7.5e-53 211.8 227 51.5
SMO361G0665 Selaginella moellendorffii HOM05D006469 ORTHO05D008034 8.3e-52 208.4 193 49.2
Actinidia17434 Actinidia chinensis HOM05D006469 ORTHO05D008034 1.2e-47 194.5 247 48.6
Manes.01G147000 Manihot esculenta HOM05D006469 ORTHO05D008034 2.0e-45 187.2 170 57.1
Cpa.g.sc6.264 Carica papaya HOM05D006469 ORTHO05D008034 1.7e-44 184.1 119 67.2
Prupe.7G169600 Prunus persica HOM05D006469 ORTHO05D008034 2.0e-42 177.2 181 55.2
ClCG01G020380 Citrullus lanatus HOM05D000348 ORTHO05D000244 1.0e-41 174.9 354 35.6
Nitab4.5_0000438g0160 Nicotiana tabacum HOM05D006469 ORTHO05D008034 4.3e-40 169.5 124 63.7
Cpa.g.sc6.265 Carica papaya HOM05D006469 ORTHO05D008034 2.1e-39 167.2 191 47.6
FAN23G0491 Fragaria x ananassa HOM05D000153 ORTHO05D000118 3.6e-39 166.4 254 41.7
TAR376G1090 Trochodendron aralioides HOM05D006469 ORTHO05D008034 1.8e-38 164.1 102 66.7
unitig_46.g18721 Utricularia gibba HOM05D006469 ORTHO05D008034 4.0e-38 162.9 210 46.7
C09p44210 Brassica napus HOM05D006469 ORTHO05D008034 1.0e-33 148.3 238 39.5
Ah.03g148920 Amaranthus hybridus HOM05D006469 ORTHO05D008034 1.7e-33 147.5 178 51.1
CDE02G4243 Ceratophyllum demersum HOM05D006469 ORTHO05D008034 3.3e-32 143.3 226 42.0
SEGI_12964 Sequoiadendron giganteum HOM05D006469 ORTHO05D008034 1.4e-30 137.9 155 42.6
BcaC04g20386 Brassica carinata HOM05D006469 ORTHO05D008034 6.8e-30 135.6 243 37.0
BcaC04g20390 Brassica carinata HOM05D006469 ORTHO05D008034 6.8e-30 135.6 243 37.0
Sabra07G0049000 Salix brachista HOM05D006469 ORTHO05D008034 2.2e-28 130.6 88 62.5
BolC9t57293H Brassica oleracea HOM05D006469 ORTHO05D008034 3.2e-27 126.7 230 37.8
ATR0810G135 Amborella trichopoda HOM05D006469 ORTHO05D008034 2.7e-26 123.6 188 41.5
BcaC03g14989 Brassica carinata HOM05D006469 ORTHO05D008034 1.3e-25 121.3 176 42.6
MD15G1244100 Malus domestica HOM05D006469 ORTHO05D008034 2.4e-19 100.5 84 54.8
CDE02G4028 Ceratophyllum demersum HOM05D006469 ORTHO05D008034 1.7e-17 94.4 94 52.1
Sabra05G0092400 Salix brachista HOM05D006469 ORTHO05D008034 2.4e-11 73.9 164 36.0
Nitab4.5_0000438g0170 Nicotiana tabacum HOM05D006469 ORTHO05D008034 3.2e-11 73.6 93 46.2
BolC2t08600H Brassica oleracea HOM05D006469 ORTHO05D008034 2.1e-10 70.9 148 35.1
COL.COLO4_22441 Corchorus olitorius HOM05D006469 ORTHO05D008034 4.6e-10 69.7 88 47.7
SMO307G0066 Selaginella moellendorffii HOM05D002553 ORTHO05D002767 2.3e-09 67.4 157 28.7
Eucgr.J00675 Eucalyptus grandis HOM05D002956 ORTHO05D008031 1.5e-08 64.7 198 26.8
Duzib147G0715 Durio zibethinus HOM05D005677 ORTHO05D006966 3.3e-08 63.5 123 31.7
Gohir.D11G190800 Gossypium hirsutum HOM05D005677 ORTHO05D006966 4.3e-08 63.2 139 32.4
Gorai.007G203300 Gossypium raimondii HOM05D005677 ORTHO05D006966 5.6e-08 62.8 139 32.4
Mapoly0001s0305 Marchantia polymorpha HOM05D002956 ORTHO05D008031 5.6e-08 62.8 166 28.9
Zm00001eb417780 Zea mays HOM05D002553 ORTHO05D002767 5.6e-08 62.8 158 27.8
FvH4_6g26750 Fragaria vesca HOM05D001602 ORTHO05D001470 7.3e-08 62.4 108 31.5
FAN05G5437 Fragaria x ananassa HOM05D001602 ORTHO05D001470 7.3e-08 62.4 108 31.5
FAN14G4128 Fragaria x ananassa HOM05D001602 ORTHO05D001470 7.3e-08 62.4 108 31.5
RcHm_v2.0_Chr0c19g0500101 Rosa chinensis HOM05D001602 ORTHO05D001470 7.3e-08 62.4 108 31.5
Sabra07G0022600 Salix brachista HOM05D005677 ORTHO05D006966 7.3e-08 62.4 117 32.5
Aa31LG4G18970 Aethionema arabicum HOM05D005677 ORTHO05D006966 9.6e-08 62.0 112 34.8
SMO352G0077 Selaginella moellendorffii HOM05D001920 ORTHO05D004895 1.2e-07 61.6 133 30.1
Migut.M00920 Erythranthe guttata HOM05D002553 ORTHO05D002767 2.8e-07 60.5 176 29.0
Cpa.g.sc83.104 Carica papaya HOM05D001602 ORTHO05D001470 4.7e-07 59.7 149 26.8
SalBow5G4467 Salvia bowleyana HOM05D005677 ORTHO05D006966 4.7e-07 59.7 114 34.2
SpUn0826_0010 Schrenkiella parvula HOM05D001602 ORTHO05D001470 4.7e-07 59.7 133 28.6
Thecc.01G035800 Theobroma cacao HOM05D005677 ORTHO05D006966 4.7e-07 59.7 124 35.5
BcaB07g30966 Brassica carinata HOM05D001602 ORTHO05D001470 6.2e-07 59.3 132 28.8
Potri.007G025600 Populus trichocarpa HOM05D005677 ORTHO05D006966 6.2e-07 59.3 117 30.8
MCO09G596 Micromonas commoda HOM05D002956 ORTHO05D008031 8.1e-07 58.9 150 27.3
Aqoxy1G02454 Aquilegia oxysepala HOM05D002553 ORTHO05D002767 1.1e-06 58.5 209 25.4
COL.COLO4_22080 Corchorus olitorius HOM05D005677 ORTHO05D006966 1.1e-06 58.5 123 33.3
Thhalv10003267m.g Eutrema salsugineum HOM05D001602 ORTHO05D001470 1.1e-06 58.5 132 28.0
Lalb_Chr14g0367171 Lupinus albus HOM05D001602 ORTHO05D001470 1.1e-06 58.5 113 31.0
SEGI_08492 Sequoiadendron giganteum HOM05D007481 ORTHO05D009444 1.4e-06 58.2 180 22.2
BolC9t55550H Brassica oleracea HOM05D001602 ORTHO05D001470 1.8e-06 57.8 108 31.5
CARHR179100 Cardamine hirsuta HOM05D001602 ORTHO05D001470 1.8e-06 57.8 132 29.5
Thecc.03G235700 Theobroma cacao HOM05D001602 ORTHO05D001470 1.8e-06 57.8 168 31.5
AUR62014940 Chenopodium quinoa HOM05D001602 ORTHO05D001470 2.4e-06 57.4 162 30.2
AUR62029201 Chenopodium quinoa HOM05D001602 ORTHO05D001470 2.4e-06 57.4 162 30.2
MD03G1234000 Malus domestica HOM05D001602 ORTHO05D001470 2.4e-06 57.4 109 30.3
MCO04G411 Micromonas commoda HOM05D000874 ORTHO05D001049 2.4e-06 57.4 126 30.2
Gorai.004G189800 Gossypium raimondii HOM05D001602 ORTHO05D001470 3.1e-06 57.0 147 32.0
PSO731G0124 Papaver somniferum HOM05D005677 ORTHO05D006966 3.1e-06 57.0 113 34.5
Prupe.4G174700 Prunus persica HOM05D001602 ORTHO05D001470 3.1e-06 57.0 109 30.3
BcaC04g21860 Brassica carinata HOM05D001602 ORTHO05D001470 4.0e-06 56.6 108 30.6
A09p20940 Brassica napus HOM05D001602 ORTHO05D001470 4.0e-06 56.6 108 30.6
C09p26540 Brassica napus HOM05D001602 ORTHO05D001470 4.0e-06 56.6 108 30.6
BraA09t37694Z Brassica rapa HOM05D001602 ORTHO05D001470 4.0e-06 56.6 108 30.6
Nitab4.5_0003666g0020 Nicotiana tabacum HOM05D007481 ORTHO05D009444 4.0e-06 56.6 128 31.2
Pp3c1_38340 Physcomitrium patens HOM05D005677 ORTHO05D006966 4.0e-06 56.6 108 32.4
CANSAT54G1478 Cannabis sativa HOM05D002956 ORTHO05D008031 5.2e-06 56.2 166 27.1
TWI53G0229 Tripterygium wilfordii HOM05D005677 ORTHO05D006966 5.2e-06 56.2 112 31.2
arahy.Tifrunner.gnm1.ann1.HEJ2LC Arachis hypogaea HOM05D001602 ORTHO05D001470 6.8e-06 55.8 108 27.8
CiPaw.03G182300 Carya illinoinensis HOM05D001602 ORTHO05D001470 6.8e-06 55.8 113 30.1
Nitab4.5_0001510g0020 Nicotiana tabacum HOM05D002553 ORTHO05D002767 6.8e-06 55.8 140 29.3
QL06p046093 Quercus lobata HOM05D005677 ORTHO05D006966 6.8e-06 55.8 118 33.1
Gohir.A08G160600 Gossypium hirsutum HOM05D001602 ORTHO05D001470 8.9e-06 55.5 147 31.3
Nitab4.5_0003024g0060 Nicotiana tabacum HOM05D007481 ORTHO05D009444 8.9e-06 55.5 128 30.5
PSO210G3110 Papaver somniferum HOM05D005677 ORTHO05D006966 8.9e-06 55.5 113 32.7
PGR042G1519 Punica granatum HOM05D001602 ORTHO05D001470 8.9e-06 55.5 136 27.9


User provided reference genes

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