Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu005018.3 Olea europaea HOM05D004497 ORTHO05D005539 2.7e-258 894.8 449 100.0
SalBow8G1477 Salvia bowleyana HOM05D004497 ORTHO05D005539 2.4e-158 562.8 447 65.3
SalBow5G0098 Salvia bowleyana HOM05D004497 ORTHO05D005539 5.6e-155 551.6 473 61.9
SalBow5G4825 Salvia bowleyana HOM05D004497 ORTHO05D005539 5.6e-155 551.6 473 61.9
SGA_v2.0_scaffold215G42316 Striga asiatica HOM05D004497 ORTHO05D005539 6.8e-153 544.7 447 63.3
Migut.I00519 Erythranthe guttata HOM05D004497 ORTHO05D005539 1.2e-152 543.9 439 64.7
Actinidia25597 Actinidia chinensis HOM05D004497 ORTHO05D005539 1.3e-151 540.4 452 63.1
CSS0032894 Camellia sinensis var. sinensis HOM05D004497 ORTHO05D005539 1.4e-150 537.0 436 63.3
MSTRG.22910 Avicennia marina HOM05D004497 ORTHO05D005539 1.9e-150 536.6 447 64.2
Nitab4.5_0002978g0150 Nicotiana tabacum HOM05D004497 ORTHO05D005539 2.3e-148 529.6 449 61.9
Cfa013402 Carpinus fangiana HOM05D004497 ORTHO05D005539 3.9e-148 528.9 428 62.1
Lsat_1_v5_gn_5_13520 Lactuca sativa HOM05D004497 ORTHO05D005539 5.1e-148 528.5 418 64.1
Rhsim08G0187300 Rhododendron simsii HOM05D004497 ORTHO05D005539 1.1e-147 527.3 469 60.1
Haze_07247 Corylus avellana HOM05D004497 ORTHO05D005539 3.3e-147 525.8 392 66.6
HanXRQChr05g0153981 Helianthus annuus HOM05D004497 ORTHO05D005539 5.6e-147 525.0 420 62.4
Lj9A476T57 Lonicera japonica HOM05D004497 ORTHO05D005539 2.8e-146 522.7 377 67.4
Duzib205G0501 Durio zibethinus HOM05D004497 ORTHO05D005539 1.8e-145 520.0 433 62.8
Thecc.03G125300 Theobroma cacao HOM05D004497 ORTHO05D005539 5.3e-145 518.5 434 62.7
CiPaw.08G116800 Carya illinoinensis HOM05D004497 ORTHO05D005539 9.0e-145 517.7 452 59.7
Nitab4.5_0000903g0080 Nicotiana tabacum HOM05D004497 ORTHO05D005539 9.0e-145 517.7 418 62.7
QL10p004476 Quercus lobata HOM05D004497 ORTHO05D005539 1.5e-144 516.9 434 60.8
Potri.015G092400 Populus trichocarpa HOM05D004497 ORTHO05D005539 8.4e-143 511.1 429 61.3
ECA246G4485 Erigeron canadensis HOM05D004497 ORTHO05D005539 1.1e-142 510.8 455 60.0
COL.COLO4_28066 Corchorus olitorius HOM05D004497 ORTHO05D005539 2.4e-142 509.6 433 61.2
Sabra15G0114200 Salix brachista HOM05D004497 ORTHO05D005539 4.2e-142 508.8 430 61.6
Atru.chr3.3406 Acer truncatum HOM05D004497 ORTHO05D005539 2.1e-141 506.5 452 58.8
Gohir.D09G246800 Gossypium hirsutum HOM05D004497 ORTHO05D005539 2.7e-141 506.1 453 58.9
TAR625G0069 Trochodendron aralioides HOM05D004497 ORTHO05D005539 2.7e-141 506.1 452 58.8
QL93p0225_0015 Quercus lobata HOM05D004497 ORTHO05D005539 4.6e-141 505.4 435 60.5
GSVIVG01013111001 Vitis vinifera HOM05D004497 ORTHO05D005539 7.8e-141 504.6 404 62.9
QL07p000007 Quercus lobata HOM05D004497 ORTHO05D005539 2.3e-140 503.1 435 60.2
Gohir.A09G246200 Gossypium hirsutum HOM05D004497 ORTHO05D005539 3.9e-140 502.3 461 58.1
Gorai.006G271300 Gossypium raimondii HOM05D004497 ORTHO05D005539 5.1e-140 501.9 433 59.8
RcHm_v2.0_Chr7g0190661 Rosa chinensis HOM05D004497 ORTHO05D005539 6.6e-140 501.5 446 57.4
PGSC0003DMG400005828 Solanum tuberosum HOM05D004497 ORTHO05D005539 1.5e-139 500.4 418 61.0
Peaxi162Scf00078g00424 Petunia axillaris HOM05D004497 ORTHO05D005539 5.6e-139 498.4 376 65.7
QL04p081834 Quercus lobata HOM05D004497 ORTHO05D005539 1.3e-138 497.3 448 57.8
vmacro20468 Vaccinium macrocarpon HOM05D004497 ORTHO05D005539 6.2e-138 495.0 488 55.1
Gohir.A12G276900 Gossypium hirsutum HOM05D004497 ORTHO05D005539 1.4e-137 493.8 392 63.3
FvH4_5g07760 Fragaria vesca HOM05D004497 ORTHO05D005539 2.4e-137 493.0 444 56.5
Dinv11148 Davidia involucrata HOM05D004497 ORTHO05D005539 3.1e-137 492.7 426 62.2
FAN18G2816 Fragaria x ananassa HOM05D004497 ORTHO05D005539 5.3e-137 491.9 444 56.3
TAR629G1275 Trochodendron aralioides HOM05D004497 ORTHO05D005539 5.3e-137 491.9 462 56.9
Sc10g0010400 Simmondsia chinensis HOM05D004497 ORTHO05D005539 1.2e-136 490.7 397 61.2
Eucgr.C01065 Eucalyptus grandis HOM05D004497 ORTHO05D005539 1.5e-136 490.3 450 54.9
Solyc08g008160.4 Solanum lycopersicum HOM05D004497 ORTHO05D005539 2.6e-136 489.6 446 59.2
Potri.012G095100 Populus trichocarpa HOM05D004497 ORTHO05D005539 3.4e-136 489.2 460 56.7
Ciclev10020238m.g Citrus clementina HOM05D004497 ORTHO05D005539 5.8e-136 488.4 429 60.8
PGR083G2085 Punica granatum HOM05D004497 ORTHO05D005539 5.8e-136 488.4 451 56.8
CANSAT56G3508 Cannabis sativa HOM05D004497 ORTHO05D005539 7.6e-136 488.0 455 57.6
Cc05_g04600 Coffea canephora HOM05D004497 ORTHO05D005539 7.6e-136 488.0 448 56.9
MD14G1161100 Malus domestica HOM05D004497 ORTHO05D005539 9.9e-136 487.6 445 56.4
TWI14G0260 Tripterygium wilfordii HOM05D004497 ORTHO05D005539 9.9e-136 487.6 453 57.2
FAN04G2053 Fragaria x ananassa HOM05D004497 ORTHO05D005539 1.3e-135 487.3 444 56.8
Sopen08g004010 Solanum pennellii HOM05D004497 ORTHO05D005539 1.3e-135 487.3 448 57.6
FAN08G0052 Fragaria x ananassa HOM05D004497 ORTHO05D005539 2.9e-135 486.1 444 56.3
CsaV3_1G009480 Cucumis sativus L. HOM05D004497 ORTHO05D005539 3.8e-135 485.7 434 56.7
EL10As4g23444 Beta vulgaris HOM05D004497 ORTHO05D005539 4.9e-135 485.3 453 57.2
Eucgr.K00186 Eucalyptus grandis HOM05D004497 ORTHO05D005539 4.9e-135 485.3 452 55.3
Lalb_Chr03g0040831 Lupinus albus HOM05D004497 ORTHO05D005539 6.4e-135 485.0 430 56.5
MD06G1147200 Malus domestica HOM05D004497 ORTHO05D005539 3.2e-134 482.6 451 54.8
Sed0020059 Sechium edule HOM05D004497 ORTHO05D005539 2.7e-133 479.6 433 57.0
ClCG03G003620 Citrullus lanatus HOM05D004497 ORTHO05D005539 3.5e-133 479.2 441 56.0
Hund03342 Selenicereus undatus HOM05D004497 ORTHO05D005539 3.9e-132 475.7 417 58.8
Aqoxy5G03475 Aquilegia oxysepala HOM05D004497 ORTHO05D005539 5.6e-131 471.9 405 56.8
Ca_04603_v3 Cicer arietinum L. HOM05D004497 ORTHO05D005539 9.6e-131 471.1 458 54.8
Ca_09070_v3 Cicer arietinum L. HOM05D004497 ORTHO05D005539 1.6e-130 470.3 458 54.6
Dinv04858 Davidia involucrata HOM05D004497 ORTHO05D005539 6.2e-130 468.4 358 66.2
Ah.08g212900 Amaranthus hybridus HOM05D004497 ORTHO05D005539 1.1e-129 467.6 441 57.6
Nn4g26409 Nelumbo nucifera HOM05D004497 ORTHO05D005539 2.4e-129 466.5 453 55.8
VMungo0331G1674 Vigna mungo HOM05D004497 ORTHO05D005539 1.5e-128 463.8 445 53.7
Glyma.16G034400 Glycine max HOM05D004497 ORTHO05D005539 3.4e-128 462.6 458 54.4
TPR.G34454 Trifolium pratense HOM05D004497 ORTHO05D005539 3.4e-128 462.6 421 55.1
Psat3g028160 Pisum sativum HOM05D004497 ORTHO05D005539 1.7e-127 460.3 449 54.6
FAN13G1359 Fragaria x ananassa HOM05D004497 ORTHO05D005539 2.9e-127 459.5 437 54.2
Medtr7g106650 Medicago truncatula HOM05D004497 ORTHO05D005539 2.9e-127 459.5 451 53.4
Lj1g0020744 Lotus japonicus HOM05D004497 ORTHO05D005539 6.4e-127 458.4 453 54.7
Phvul.003G017500 Phaseolus vulgaris HOM05D004497 ORTHO05D005539 1.9e-126 456.8 425 54.8
Manes.14G053800 Manihot esculenta HOM05D004497 ORTHO05D005539 7.1e-126 454.9 386 59.1
PSO782G0077 Papaver somniferum HOM05D004497 ORTHO05D005539 1.2e-125 454.1 413 56.9
PSO063G4711 Papaver somniferum HOM05D004497 ORTHO05D005539 4.6e-125 452.2 413 56.7
MBI11_g15865_MAGBIO Magnolia biondii HOM05D004497 ORTHO05D005539 7.9e-125 451.4 444 53.6
THA.LOC104820611 Tarenaya hassleriana HOM05D004497 ORTHO05D005539 7.9e-125 451.4 398 55.5
arahy.Tifrunner.gnm1.ann1.0L2FVX Arachis hypogaea HOM05D004497 ORTHO05D005539 3.9e-124 449.1 443 53.0
arahy.Tifrunner.gnm1.ann1.16KDXT Arachis hypogaea HOM05D004497 ORTHO05D005539 3.9e-124 449.1 443 53.3
MELO3C002347.2 Cucumis melo HOM05D004497 ORTHO05D005539 3.9e-124 449.1 377 58.6
Glyma.07G068400 Glycine max HOM05D004497 ORTHO05D005539 2.5e-123 446.4 392 57.1
THA.LOC104814264 Tarenaya hassleriana HOM05D004497 ORTHO05D005539 9.6e-123 444.5 392 56.1
CDE08G0729 Ceratophyllum demersum HOM05D004497 ORTHO05D005539 2.0e-120 436.8 454 52.2
AT1G29320 Arabidopsis thaliana HOM05D004497 ORTHO05D005539 7.6e-120 434.9 434 52.1
CiPaw.11G010200 Carya illinoinensis HOM05D004497 ORTHO05D005539 1.7e-119 433.7 331 65.3
DCAR_012679 Daucus carota HOM05D004497 ORTHO05D005539 2.9e-119 433.0 395 58.0
AL1G43130 Arabidopsis lyrata HOM05D004497 ORTHO05D005539 9.3e-118 427.9 434 51.4
A08p25140 Brassica napus HOM05D004497 ORTHO05D005539 9.3e-118 427.9 419 51.1
Thhalv10007651m.g Eutrema salsugineum HOM05D004497 ORTHO05D005539 9.3e-118 427.9 398 53.8
Sp1g25270 Schrenkiella parvula HOM05D004497 ORTHO05D005539 7.9e-117 424.9 426 50.9
BraA09t39216Z Brassica rapa HOM05D004497 ORTHO05D005539 5.1e-116 422.2 392 53.1
C03p75750 Brassica napus HOM05D004497 ORTHO05D005539 3.3e-115 419.5 398 52.0
CARHR028640 Cardamine hirsuta HOM05D004497 ORTHO05D005539 3.3e-115 419.5 448 49.1
Prupe.1G584300 Prunus persica HOM05D004497 ORTHO05D005539 4.3e-115 419.1 452 51.3
AUR62025903 Chenopodium quinoa HOM05D004497 ORTHO05D005539 7.4e-115 418.3 433 52.7
BolC3t19835H Brassica oleracea HOM05D004497 ORTHO05D005539 2.2e-114 416.8 419 50.6
Carub.0001s2754 Capsella rubella HOM05D004497 ORTHO05D005539 2.2e-114 416.8 450 49.3
BcaC01g00099 Brassica carinata HOM05D004497 ORTHO05D005539 4.8e-114 415.6 398 51.8
A09p36980 Brassica napus HOM05D004497 ORTHO05D005539 3.1e-113 412.9 403 51.4
BcaB03g12154 Brassica carinata HOM05D004497 ORTHO05D005539 2.0e-112 410.2 399 51.6
TWI39G1139 Tripterygium wilfordii HOM05D004497 ORTHO05D005539 5.9e-112 408.7 490 49.0
BcaB07g32523 Brassica carinata HOM05D004497 ORTHO05D005539 1.0e-111 407.9 400 52.2
Aa31LG6G6220 Aethionema arabicum HOM05D004497 ORTHO05D005539 1.7e-111 407.1 448 49.3
Cfa014010 Carpinus fangiana HOM05D004497 ORTHO05D005539 2.9e-111 406.4 451 51.2
BolC5t31537H Brassica oleracea HOM05D004497 ORTHO05D005539 8.5e-111 404.8 403 51.4
BcaC05g26958 Brassica carinata HOM05D004497 ORTHO05D005539 1.1e-110 404.4 398 51.8
C05p28100 Brassica napus HOM05D004497 ORTHO05D005539 1.1e-110 404.4 398 51.8
BraA08t34469Z Brassica rapa HOM05D004497 ORTHO05D005539 1.9e-110 403.7 476 45.6
HPP92_023861 Vanilla planifolia HOM05D004497 ORTHO05D005539 1.9e-110 403.7 395 52.7
Zm00001eb105680 Zea mays HOM05D004497 ORTHO05D005539 4.2e-110 402.5 402 52.7
ATR0171G018 Amborella trichopoda HOM05D004497 ORTHO05D005539 3.0e-108 396.4 457 47.9
SEGI_30468 Sequoiadendron giganteum HOM05D004497 ORTHO05D005539 7.4e-107 391.7 455 45.5
AUR62025086 Chenopodium quinoa HOM05D004497 ORTHO05D005539 1.0e-103 381.3 489 46.8
AUR62032705 Chenopodium quinoa HOM05D004497 ORTHO05D005539 1.3e-103 380.9 464 48.3
Sed0003097 Sechium edule HOM05D004497 ORTHO05D005539 3.8e-103 379.4 289 63.0
Duzib068G0683 Durio zibethinus HOM05D004497 ORTHO05D005539 1.1e-102 377.9 328 59.1
unitig_699.g19657 Utricularia gibba HOM05D004497 ORTHO05D005539 2.7e-101 373.2 451 48.3
Aqoxy5G03495 Aquilegia oxysepala HOM05D004497 ORTHO05D005539 8.0e-93 345.1 329 52.9
Cpa.g.sc166.23 Carica papaya HOM05D004497 ORTHO05D005539 1.0e-92 344.7 328 53.4
SHI10599 Sapria himalayana HOM05D004497 ORTHO05D005539 4.4e-91 339.3 359 49.6
Sabra12G0069700 Salix brachista HOM05D004497 ORTHO05D005539 8.2e-90 335.1 333 54.1
Mapoly0079s0016 Marchantia polymorpha HOM05D004497 ORTHO05D005539 1.6e-80 304.3 451 41.2
Os07g0506700 Oryza sativa ssp. japonica HOM05D004497 ORTHO05D005539 4.2e-78 296.2 333 47.4
SMO165G0173 Selaginella moellendorffii HOM05D004497 ORTHO05D005539 2.1e-77 293.9 434 40.1
AUR62025094 Chenopodium quinoa HOM05D004497 ORTHO05D005539 1.0e-76 291.6 336 47.0
Pp3c13_24500 Physcomitrium patens HOM05D004497 ORTHO05D005539 5.7e-75 285.8 470 38.9
Nitab4.5_0003013g0030 Nicotiana tabacum HOM05D004497 ORTHO05D005539 1.2e-72 278.1 449 43.0
Zm00001eb322320 Zea mays HOM05D004497 ORTHO05D005539 2.7e-72 276.9 181 69.1
vmacro19222 Vaccinium macrocarpon HOM05D004497 ORTHO05D005539 3.8e-71 273.1 344 46.2
SalBow8G1815 Salvia bowleyana HOM05D004497 ORTHO05D005539 5.4e-57 226.1 176 69.3
AagrBONN_evm.TU.Sc2ySwM_344.3271 Anthoceros agrestis HOM05D000006 ORTHO05D004030 5.0e-55 219.5 339 37.2
Actinidia19491 Actinidia chinensis HOM05D004497 ORTHO05D005539 4.3e-54 216.5 447 35.6
AUR62029644 Chenopodium quinoa HOM05D004497 ORTHO05D005539 9.5e-54 215.3 254 47.2
Ca_16680_v3 Cicer arietinum L. HOM05D000160 ORTHO05D000496 2.0e-51 207.6 166 57.8
RcHm_v2.0_Chr0c30g0501231 Rosa chinensis HOM05D004497 ORTHO05D005539 8.3e-50 202.2 399 34.8
RcHm_v2.0_Chr3g0452771 Rosa chinensis HOM05D004497 ORTHO05D005539 8.3e-50 202.2 399 34.8
CBR_g31949 Chara braunii HOM05D004497 ORTHO05D005539 4.9e-42 176.4 443 31.4
RcHm_v2.0_Chr5g0041021 Rosa chinensis HOM05D004497 ORTHO05D005539 3.9e-39 166.8 404 33.2
AUR62025088 Chenopodium quinoa HOM05D004497 ORTHO05D005539 3.3e-38 163.7 269 40.1
AUR62025079 Chenopodium quinoa HOM05D004497 ORTHO05D005539 1.2e-32 145.2 294 34.0
Oeu006698.1 Olea europaea HOM05D004497 ORTHO05D005539 1.5e-27 128.3 85 76.5
MCO03G018 Micromonas commoda HOM05D004497 ORTHO05D005539 1.1e-20 105.5 192 31.2
Cre17.g718650 Chlamydomonas reinhardtii HOM05D004497 ORTHO05D005539 1.8e-20 104.8 421 24.2
TAR371G1248 Trochodendron aralioides HOM05D004497 ORTHO05D005539 1.1e-17 95.5 81 56.8
PRCOL_00003967 Prasinoderma coloniale HOM05D004497 ORTHO05D005539 1.4e-17 95.1 182 34.1
AUR62025092 Chenopodium quinoa HOM05D004497 ORTHO05D005539 9.3e-17 92.4 53 77.4
Gohir.D13G181701 Gossypium hirsutum HOM05D004497 ORTHO05D005539 1.3e-15 88.6 141 38.3
C04p39580 Brassica napus HOM05D004497 ORTHO05D005539 3.9e-15 87.0 83 55.4
BolC4t25523H Brassica oleracea HOM05D004497 ORTHO05D005539 3.9e-15 87.0 83 55.4
Phvul.003G017700 Phaseolus vulgaris HOM05D004497 ORTHO05D005539 4.2e-09 67.0 92 40.2
ECA248G2349 Erigeron canadensis HOM05D000041 ORTHO05D000452 3.3e-06 57.4 52 53.8


User provided reference genes

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