Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu004876.1 Olea europaea HOM05D002694 ORTHO05D002927 2.1e-104 382.5 206 100.0
Oeu036664.1 Olea europaea HOM05D002694 ORTHO05D002927 1.3e-53 213.8 148 86.5
CSS0021439 Camellia sinensis var. sinensis HOM05D002694 ORTHO05D002927 3.8e-42 175.6 148 72.3
CSS0029367 Camellia sinensis var. sinensis HOM05D002694 ORTHO05D002927 3.8e-42 175.6 148 72.3
MSTRG.27847 Avicennia marina HOM05D002694 ORTHO05D002927 5.0e-42 175.3 148 73.0
GSVIVG01022838001 Vitis vinifera HOM05D002694 ORTHO05D002927 5.0e-42 175.3 148 73.0
Dinv19385 Davidia involucrata HOM05D002694 ORTHO05D002927 8.5e-42 174.5 148 73.0
Migut.N01049 Erythranthe guttata HOM05D002694 ORTHO05D002927 1.6e-40 170.2 148 70.3
Actinidia00199 Actinidia chinensis HOM05D002694 ORTHO05D002927 2.7e-40 169.5 148 70.3
Peaxi162Scf00011g00627 Petunia axillaris HOM05D002694 ORTHO05D002927 3.6e-40 169.1 148 65.5
Rhsim11G0127700 Rhododendron simsii HOM05D002694 ORTHO05D002927 4.7e-40 168.7 148 71.6
SalBow6G7198 Salvia bowleyana HOM05D002694 ORTHO05D002927 4.7e-40 168.7 148 68.9
Potri.003G018500 Populus trichocarpa HOM05D002694 ORTHO05D002927 2.3e-39 166.4 148 69.6
CiPaw.05G049600 Carya illinoinensis HOM05D002694 ORTHO05D002927 3.0e-39 166.0 148 68.9
vmacro01749 Vaccinium macrocarpon HOM05D002694 ORTHO05D002927 3.0e-39 166.0 148 70.3
Lj5A254T86 Lonicera japonica HOM05D002694 ORTHO05D002927 1.2e-38 164.1 148 68.2
Sabra01G0163900 Salix brachista HOM05D002694 ORTHO05D002927 1.2e-38 164.1 148 68.2
Cpa.g.sc31.40 Carica papaya HOM05D002694 ORTHO05D002927 1.5e-38 163.7 148 67.6
MBI06_g17221_MAGBIO Magnolia biondii HOM05D002694 ORTHO05D002927 1.5e-38 163.7 148 65.5
MSTRG.5220 Avicennia marina HOM05D002694 ORTHO05D002927 2.0e-38 163.3 148 68.9
QL02p099401 Quercus lobata HOM05D002694 ORTHO05D002927 2.0e-38 163.3 148 68.2
SGA_v2.0_scaffold92G28183 Striga asiatica HOM05D002694 ORTHO05D002927 2.0e-38 163.3 148 67.6
CAN.G798.20 Capsicum annuum HOM05D002694 ORTHO05D002927 2.6e-38 162.9 148 65.5
Gohir.A03G193100 Gossypium hirsutum HOM05D002694 ORTHO05D002927 3.4e-38 162.5 148 68.2
Sabra03G0010100 Salix brachista HOM05D002694 ORTHO05D002927 4.4e-38 162.2 148 67.6
Thecc.02G089100 Theobroma cacao HOM05D002694 ORTHO05D002927 5.7e-38 161.8 148 67.6
Cfa005502 Carpinus fangiana HOM05D002694 ORTHO05D002927 7.5e-38 161.4 148 66.9
Duzib132G0043 Durio zibethinus HOM05D002694 ORTHO05D002927 9.8e-38 161.0 148 67.6
Gorai.005G242000 Gossypium raimondii HOM05D002694 ORTHO05D002927 9.8e-38 161.0 148 67.6
Lj9A303T74 Lonicera japonica HOM05D002694 ORTHO05D002927 1.7e-37 160.2 148 66.9
Haze_01743 Corylus avellana HOM05D002694 ORTHO05D002927 2.2e-37 159.8 148 66.2
COL.COLO4_11774 Corchorus olitorius HOM05D002694 ORTHO05D002927 2.8e-37 159.5 148 67.6
Nitab4.5_0001744g0030 Nicotiana tabacum HOM05D002694 ORTHO05D002927 2.8e-37 159.5 148 65.5
Gohir.A13G035700 Gossypium hirsutum HOM05D002694 ORTHO05D002927 4.8e-37 158.7 148 67.6
Nitab4.5_0008546g0030 Nicotiana tabacum HOM05D002694 ORTHO05D002927 6.3e-37 158.3 148 64.9
PGR142G3862 Punica granatum HOM05D002694 ORTHO05D002927 6.3e-37 158.3 148 66.9
TAR376G0808 Trochodendron aralioides HOM05D002694 ORTHO05D002927 6.3e-37 158.3 147 66.7
CANSAT11G2158 Cannabis sativa HOM05D002694 ORTHO05D002927 8.3e-37 157.9 147 66.0
MD15G1428100 Malus domestica HOM05D002694 ORTHO05D002927 1.1e-36 157.5 148 66.9
SGA_v2.0_scaffold11G05950 Striga asiatica HOM05D002694 ORTHO05D002927 1.1e-36 157.5 148 64.9
Prupe.1G572800 Prunus persica HOM05D002694 ORTHO05D002927 1.4e-36 157.1 148 65.5
CSS0003662 Camellia sinensis var. sinensis HOM05D002694 ORTHO05D002927 1.8e-36 156.8 148 68.2
MD08G1236100 Malus domestica HOM05D002694 ORTHO05D002927 1.8e-36 156.8 148 66.9
Cc02_g22740 Coffea canephora HOM05D002694 ORTHO05D002927 2.4e-36 156.4 148 66.9
DCAR_006697 Daucus carota HOM05D002694 ORTHO05D002927 3.1e-36 156.0 147 64.6
Ciclev10000069m.g Citrus clementina HOM05D002694 ORTHO05D002927 5.4e-36 155.2 148 65.5
Duzib052G0561 Durio zibethinus HOM05D002694 ORTHO05D002927 5.4e-36 155.2 148 66.9
Oeu000112.1 Olea europaea HOM05D002694 ORTHO05D002927 5.4e-36 155.2 148 67.6
Gorai.013G038500 Gossypium raimondii HOM05D002694 ORTHO05D002927 7.0e-36 154.8 148 66.2
Aqoxy5G02647 Aquilegia oxysepala HOM05D002694 ORTHO05D002927 9.1e-36 154.5 148 62.8
Gohir.D13G034000 Gossypium hirsutum HOM05D002694 ORTHO05D002927 9.1e-36 154.5 148 65.5
Atru.chr3.1571 Acer truncatum HOM05D002694 ORTHO05D002927 2.7e-35 152.9 148 65.5
Atru.chr3.1590 Acer truncatum HOM05D002694 ORTHO05D002927 2.7e-35 152.9 148 65.5
Eucgr.I02740 Eucalyptus grandis HOM05D002694 ORTHO05D002927 3.5e-35 152.5 148 64.2
Lalb_Chr15g0090681 Lupinus albus HOM05D002694 ORTHO05D002927 3.5e-35 152.5 148 64.2
Manes.07G019200 Manihot esculenta HOM05D002694 ORTHO05D002927 4.5e-35 152.1 148 64.9
ECA234G0155 Erigeron canadensis HOM05D002694 ORTHO05D002927 5.9e-35 151.8 147 61.9
TWI59G0386 Tripterygium wilfordii HOM05D002694 ORTHO05D002927 5.9e-35 151.8 148 64.2
Nn1g08357 Nelumbo nucifera HOM05D002694 ORTHO05D002927 7.7e-35 151.4 148 63.5
TAR628G0910 Trochodendron aralioides HOM05D002694 ORTHO05D002927 7.7e-35 151.4 148 63.5
Lsat_1_v5_gn_5_105680 Lactuca sativa HOM05D002694 ORTHO05D002927 2.3e-34 149.8 147 60.5
Lalb_Chr20g0123581 Lupinus albus HOM05D002694 ORTHO05D002927 2.3e-34 149.8 148 62.8
Nn5g27493 Nelumbo nucifera HOM05D002694 ORTHO05D002927 2.9e-34 149.4 148 62.8
Phvul.006G216100 Phaseolus vulgaris HOM05D002694 ORTHO05D002927 2.9e-34 149.4 148 64.9
VMungo0540G2271 Vigna mungo HOM05D002694 ORTHO05D002927 2.9e-34 149.4 148 64.9
Psat1g222080 Pisum sativum HOM05D002694 ORTHO05D002927 6.5e-34 148.3 148 62.8
Solyc01g103990.3 Solanum lycopersicum HOM05D002694 ORTHO05D002927 6.5e-34 148.3 148 62.2
TWI23G0063 Tripterygium wilfordii HOM05D002694 ORTHO05D002927 1.5e-33 147.1 141 64.5
Lj6g0015845 Lotus japonicus HOM05D002694 ORTHO05D002927 1.9e-33 146.7 148 64.2
Sopen01g046390 Solanum pennellii HOM05D002694 ORTHO05D002927 1.9e-33 146.7 148 62.2
Lj9A303T75 Lonicera japonica HOM05D002694 ORTHO05D002927 2.5e-33 146.4 148 63.5
TPR.G2128 Trifolium pratense HOM05D002694 ORTHO05D002927 2.5e-33 146.4 148 62.2
TWI14G0195 Tripterygium wilfordii HOM05D002694 ORTHO05D002927 2.5e-33 146.4 148 62.8
arahy.Tifrunner.gnm1.ann1.LAND87 Arachis hypogaea HOM05D002694 ORTHO05D002927 3.3e-33 146.0 148 62.2
arahy.Tifrunner.gnm1.ann1.YNH2A3 Arachis hypogaea HOM05D002694 ORTHO05D002927 3.3e-33 146.0 148 62.2
QL12p023736 Quercus lobata HOM05D002694 ORTHO05D002927 3.3e-33 146.0 141 64.5
GSVIVG01026090001 Vitis vinifera HOM05D002694 ORTHO05D002927 4.2e-33 145.6 148 62.8
Glyma.12G170100 Glycine max HOM05D002694 ORTHO05D002927 5.5e-33 145.2 148 63.5
TPR.G23572 Trifolium pratense HOM05D002694 ORTHO05D002927 5.5e-33 145.2 148 62.2
Medtr2g006520 Medicago truncatula HOM05D002694 ORTHO05D002927 7.2e-33 144.8 148 62.2
PGSC0003DMG400023771 Solanum tuberosum HOM05D002694 ORTHO05D002927 1.2e-32 144.1 148 60.8
FvH4_5g28950 Fragaria vesca HOM05D002694 ORTHO05D002927 1.6e-32 143.7 148 62.2
FAN08G2300 Fragaria x ananassa HOM05D002694 ORTHO05D002927 1.6e-32 143.7 148 62.2
FAN13G1292 Fragaria x ananassa HOM05D002694 ORTHO05D002927 1.6e-32 143.7 148 62.2
HanXRQChr10g0298121 Helianthus annuus HOM05D002694 ORTHO05D002927 2.1e-32 143.3 147 59.9
FAN18G4351 Fragaria x ananassa HOM05D002694 ORTHO05D002927 4.7e-32 142.1 148 61.5
CDE06G1701 Ceratophyllum demersum HOM05D002694 ORTHO05D002927 6.1e-32 141.7 148 60.1
FAN04G2388 Fragaria x ananassa HOM05D002694 ORTHO05D002927 8.0e-32 141.4 148 61.5
PSO170G0717 Papaver somniferum HOM05D002694 ORTHO05D002927 1.4e-31 140.6 148 58.8
HanXRQChr16g0513871 Helianthus annuus HOM05D002694 ORTHO05D002927 1.8e-31 140.2 147 59.9
PSO782G4887 Papaver somniferum HOM05D002694 ORTHO05D002927 1.8e-31 140.2 148 58.1
Sc01g0002010 Simmondsia chinensis HOM05D002694 ORTHO05D002927 4.0e-31 139.0 148 58.8
PSO170G3020 Papaver somniferum HOM05D002694 ORTHO05D002927 5.2e-31 138.7 148 57.4
PSO017G2635 Papaver somniferum HOM05D002694 ORTHO05D002927 8.9e-31 137.9 148 57.4
Hund27116 Selenicereus undatus HOM05D002694 ORTHO05D002927 2.0e-30 136.7 148 58.8
Potri.004G217800 Populus trichocarpa HOM05D002694 ORTHO05D002927 3.4e-30 136.0 148 60.1
CDE08G0876 Ceratophyllum demersum HOM05D002694 ORTHO05D002927 4.4e-30 135.6 148 58.1
Aa31LG7G6940 Aethionema arabicum HOM05D002694 ORTHO05D002927 7.5e-30 134.8 134 64.2
ClCG09G014070 Citrullus lanatus HOM05D002694 ORTHO05D002927 1.7e-29 133.7 148 57.4
Ah.05g178600 Amaranthus hybridus HOM05D002694 ORTHO05D002927 2.2e-29 133.3 148 58.1
CARHR023310 Cardamine hirsuta HOM05D002694 ORTHO05D002927 3.7e-29 132.5 148 59.5
AL1G36490 Arabidopsis lyrata HOM05D002694 ORTHO05D002927 6.3e-29 131.7 134 63.4
AT1G22930 Arabidopsis thaliana HOM05D002694 ORTHO05D002927 6.3e-29 131.7 134 63.4
Dinv41760 Davidia involucrata HOM05D002694 ORTHO05D002927 8.3e-29 131.3 148 58.8
Sp1g20390 Schrenkiella parvula HOM05D002694 ORTHO05D002927 8.3e-29 131.3 134 62.7
Thhalv10006618m.g Eutrema salsugineum HOM05D002694 ORTHO05D002927 1.4e-28 130.6 134 61.9
Carub.0001s2243 Capsella rubella HOM05D002694 ORTHO05D002927 4.1e-28 129.0 133 62.4
A09p41810 Brassica napus HOM05D002694 ORTHO05D002927 5.4e-28 128.6 134 61.9
Nitab4.5_0005772g0050 Nicotiana tabacum HOM05D002694 ORTHO05D002927 5.4e-28 128.6 148 57.4
BcaB07g32290 Brassica carinata HOM05D002694 ORTHO05D002927 7.0e-28 128.3 134 61.2
Manes.10G122812 Manihot esculenta HOM05D002694 ORTHO05D002927 7.0e-28 128.3 143 58.0
BcaC05g26199 Brassica carinata HOM05D002694 ORTHO05D002927 9.2e-28 127.9 134 61.2
C05p22070 Brassica napus HOM05D002694 ORTHO05D002927 9.2e-28 127.9 134 61.2
BolC5t30903H Brassica oleracea HOM05D002694 ORTHO05D002927 9.2e-28 127.9 134 61.2
BraA09t39670Z Brassica rapa HOM05D002694 ORTHO05D002927 9.2e-28 127.9 134 61.2
HPP92_005674 Vanilla planifolia HOM05D002694 ORTHO05D002927 9.2e-28 127.9 147 55.8
EL10Ac1g00138 Beta vulgaris HOM05D002694 ORTHO05D002927 1.2e-27 127.5 148 54.7
CsaV3_6G037510 Cucumis sativus L. HOM05D002694 ORTHO05D002927 1.6e-27 127.1 148 54.7
AUR62004598 Chenopodium quinoa HOM05D002694 ORTHO05D002927 4.5e-27 125.6 148 55.4
AUR62023546 Chenopodium quinoa HOM05D002694 ORTHO05D002927 4.5e-27 125.6 148 55.4
MELO3C014361.2 Cucumis melo HOM05D002694 ORTHO05D002927 5.9e-27 125.2 148 54.1
RcHm_v2.0_Chr7g0221251 Rosa chinensis HOM05D002694 ORTHO05D002927 8.6e-26 121.3 148 55.4
CAN.G308.29 Capsicum annuum HOM05D002694 ORTHO05D002927 3.3e-25 119.4 147 53.7
Sed0018888 Sechium edule HOM05D002694 ORTHO05D002927 5.6e-25 118.6 134 57.5
SEGI_23513 Sequoiadendron giganteum HOM05D002694 ORTHO05D002927 7.3e-25 118.2 151 51.7
Zm00001eb082280 Zea mays HOM05D002694 ORTHO05D002927 9.5e-25 117.9 148 51.4
Os02g0556700 Oryza sativa ssp. japonica HOM05D002694 ORTHO05D002927 1.2e-24 117.5 148 52.0
Sopen06g023430 Solanum pennellii HOM05D002694 ORTHO05D002927 6.1e-24 115.2 147 51.7
Aa31LG9G14770 Aethionema arabicum HOM05D002694 ORTHO05D002927 1.0e-23 114.4 148 52.0
Solyc06g064910.3 Solanum lycopersicum HOM05D002694 ORTHO05D002927 1.0e-23 114.4 147 51.7
Lalb_Chr07g0185771 Lupinus albus HOM05D002694 ORTHO05D002927 1.4e-23 114.0 148 54.7
THA.LOC104816530 Tarenaya hassleriana HOM05D002694 ORTHO05D002927 3.0e-23 112.8 154 52.6
Peaxi162Scf00269g01412 Petunia axillaris HOM05D002694 ORTHO05D002927 6.8e-23 111.7 148 50.7
unitig_699.g19869 Utricularia gibba HOM05D002694 ORTHO05D002927 1.5e-22 110.5 148 50.7
CiPaw.08G003200 Carya illinoinensis HOM05D002694 ORTHO05D002927 2.6e-22 109.8 136 55.9
Os04g0439100 Oryza sativa ssp. japonica HOM05D002694 ORTHO05D002927 3.4e-22 109.4 141 49.6
Potri.013G105300 Populus trichocarpa HOM05D002694 ORTHO05D002927 5.8e-22 108.6 124 55.6
HanXRQChr04g0113041 Helianthus annuus HOM05D002694 ORTHO05D002927 7.5e-22 108.2 145 52.4
Sp6g08390 Schrenkiella parvula HOM05D002694 ORTHO05D002927 3.7e-21 105.9 148 48.0
Sabra13G0091000 Salix brachista HOM05D002694 ORTHO05D002927 4.9e-21 105.5 126 54.8
AL6G42880 Arabidopsis lyrata HOM05D002694 ORTHO05D002927 1.1e-20 104.4 148 48.0
AagrBONN_evm.TU.Sc2ySwM_344.4070 Anthoceros agrestis HOM05D002694 ORTHO05D002927 2.4e-20 103.2 149 45.6
Thhalv10028375m.g Eutrema salsugineum HOM05D002694 ORTHO05D002927 4.1e-20 102.4 148 48.0
BcaC04g20963 Brassica carinata HOM05D002694 ORTHO05D002927 7.0e-20 101.7 148 47.3
C09p37480 Brassica napus HOM05D002694 ORTHO05D002927 7.0e-20 101.7 148 47.3
BolC9t56579H Brassica oleracea HOM05D002694 ORTHO05D002927 7.0e-20 101.7 148 47.3
Mapoly0114s0005 Marchantia polymorpha HOM05D002694 ORTHO05D002927 1.2e-19 100.9 149 45.6
Zm00001eb182010 Zea mays HOM05D002694 ORTHO05D002927 1.7e-18 97.1 148 44.6
Carub.0006s2773 Capsella rubella HOM05D002694 ORTHO05D002927 6.6e-18 95.1 148 45.3
Pp3c19_2580 Physcomitrium patens HOM05D002694 ORTHO05D002927 6.2e-16 88.6 149 43.0
AT4G09150 Arabidopsis thaliana HOM05D002694 ORTHO05D002927 1.4e-15 87.4 131 46.6
A09p29540 Brassica napus HOM05D002694 ORTHO05D002927 6.8e-15 85.1 148 43.2
BraA09t38524Z Brassica rapa HOM05D002694 ORTHO05D002927 6.8e-15 85.1 148 43.2
CARHR260210 Cardamine hirsuta HOM05D002694 ORTHO05D002927 8.9e-15 84.7 131 46.6
Pp3c19_2560 Physcomitrium patens HOM05D002694 ORTHO05D002927 8.9e-15 84.7 143 43.4
THA.LOC104813107 Tarenaya hassleriana HOM05D002694 ORTHO05D002927 5.8e-14 82.0 148 45.3
HanXRQChr17g0550261 Helianthus annuus HOM05D002694 ORTHO05D002927 2.2e-13 80.1 95 56.8
ATR0697G050 Amborella trichopoda HOM05D002694 ORTHO05D002927 2.9e-13 79.7 141 40.4
SMO271G0127 Selaginella moellendorffii HOM05D002694 ORTHO05D002927 3.2e-12 76.3 151 39.1
Glyma.08G188000 Glycine max HOM05D002694 ORTHO05D002927 3.1e-07 59.7 148 38.5
Nitab4.5_0004970g0030 Nicotiana tabacum HOM05D002694 ORTHO05D002927 5.2e-07 58.9 148 37.2


User provided reference genes

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