Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu004653.1 Olea europaea HOM05D002320 ORTHO05D002428 7.5e-40 166.8 87 100.0
HanXRQChr01g0015531 Helianthus annuus HOM05D002320 ORTHO05D002428 4.6e-13 77.8 47 91.5
CiPaw.13G023000 Carya illinoinensis HOM05D002320 ORTHO05D002428 7.8e-13 77.0 47 91.5
Sabra14G0037100 Salix brachista HOM05D002320 ORTHO05D002428 7.8e-13 77.0 47 91.5
Sabra14G0039200 Salix brachista HOM05D002320 ORTHO05D002428 7.8e-13 77.0 47 91.5
Lsat_1_v5_gn_1_83741 Lactuca sativa HOM05D002320 ORTHO05D002428 1.3e-12 76.3 47 89.4
TWI14G0379 Tripterygium wilfordii HOM05D002320 ORTHO05D002428 1.3e-12 76.3 46 93.5
ECA248G1070 Erigeron canadensis HOM05D001479 ORTHO05D001401 1.7e-12 75.9 47 87.2
Actinidia30945 Actinidia chinensis HOM05D002320 ORTHO05D002428 2.3e-12 75.5 46 93.5
Lj7C550G3 Lonicera japonica HOM05D002320 ORTHO05D002428 2.3e-12 75.5 47 89.4
Peaxi162Scf00103g01214 Petunia axillaris HOM05D002320 ORTHO05D002428 2.3e-12 75.5 47 87.2
SGA_v2.0_scaffold340G49341 Striga asiatica HOM05D002320 ORTHO05D002428 2.3e-12 75.5 47 89.4
Duzib133G1189 Durio zibethinus HOM05D002320 ORTHO05D002428 3.0e-12 75.1 47 89.4
Gohir.A11G074400 Gossypium hirsutum HOM05D002320 ORTHO05D002428 3.0e-12 75.1 47 89.4
Gorai.007G084700 Gossypium raimondii HOM05D002320 ORTHO05D002428 3.0e-12 75.1 47 89.4
Gorai.008G110800 Gossypium raimondii HOM05D002320 ORTHO05D002428 3.0e-12 75.1 47 89.4
Thecc.01G401100 Theobroma cacao HOM05D002320 ORTHO05D002428 3.0e-12 75.1 47 89.4
VMungo0540G1079 Vigna mungo HOM05D002320 ORTHO05D002428 3.0e-12 75.1 47 89.4
Actinidia05782 Actinidia chinensis HOM05D002320 ORTHO05D002428 3.9e-12 74.7 46 93.5
Glyma.07G118501 Glycine max HOM05D002320 ORTHO05D002428 3.9e-12 74.7 47 89.4
vmacro13526 Vaccinium macrocarpon HOM05D002320 ORTHO05D002428 3.9e-12 74.7 46 91.3
Ca_07417_v3 Cicer arietinum L. HOM05D002320 ORTHO05D002428 5.1e-12 74.3 47 87.2
Rhsim01G0141900 Rhododendron simsii HOM05D002320 ORTHO05D002428 5.1e-12 74.3 46 89.1
Lalb_Chr03g0040921 Lupinus albus HOM05D002320 ORTHO05D002428 6.6e-12 73.9 47 87.2
Nitab4.5_0000293g0110 Nicotiana tabacum HOM05D002320 ORTHO05D002428 6.6e-12 73.9 47 87.2
Atru.chr5.85 Acer truncatum HOM05D002320 ORTHO05D002428 8.7e-12 73.6 47 87.2
CAN.G586.2 Capsicum annuum HOM05D002320 ORTHO05D002428 8.7e-12 73.6 47 87.2
Gohir.D11G079100 Gossypium hirsutum HOM05D002320 ORTHO05D002428 8.7e-12 73.6 47 87.2
QL10p044954 Quercus lobata HOM05D004535 ORTHO05D005341 8.7e-12 73.6 47 87.2
VMungo0331G0907 Vigna mungo HOM05D002320 ORTHO05D002428 8.7e-12 73.6 47 87.2
arahy.Tifrunner.gnm1.ann1.7MRV43 Arachis hypogaea HOM05D002320 ORTHO05D002428 1.1e-11 73.2 47 89.4
arahy.Tifrunner.gnm1.ann1.PM0Q6H Arachis hypogaea HOM05D002320 ORTHO05D002428 1.1e-11 73.2 47 89.4
Lj3g0021219 Lotus japonicus HOM05D002320 ORTHO05D002428 1.1e-11 73.2 47 85.1
Duzib138G0483 Durio zibethinus HOM05D002320 ORTHO05D002428 1.5e-11 72.8 47 87.2
Medtr8g007500 Medicago truncatula HOM05D002320 ORTHO05D002428 1.5e-11 72.8 47 85.1
Actinidia21624 Actinidia chinensis HOM05D002320 ORTHO05D002428 2.5e-11 72.0 46 89.1
Thecc.03G237600 Theobroma cacao HOM05D002320 ORTHO05D002428 2.5e-11 72.0 47 80.9
COL.COLO4_12365 Corchorus olitorius HOM05D002320 ORTHO05D002428 3.3e-11 71.6 45 91.1
Migut.B01501 Erythranthe guttata HOM05D002320 ORTHO05D002428 3.3e-11 71.6 46 84.8
Gorai.004G167400 Gossypium raimondii HOM05D002320 ORTHO05D002428 4.3e-11 71.2 48 87.5
Actinidia12636 Actinidia chinensis HOM05D002320 ORTHO05D002428 5.6e-11 70.9 46 87.0
Nn1g00726 Nelumbo nucifera HOM05D002320 ORTHO05D002428 5.6e-11 70.9 47 83.0
Phvul.008G138500 Phaseolus vulgaris HOM05D002320 ORTHO05D002428 5.6e-11 70.9 46 87.0
DCAR_025039 Daucus carota HOM05D002320 ORTHO05D002428 7.3e-11 70.5 46 87.0
AL6G53550 Arabidopsis lyrata HOM05D002320 ORTHO05D002428 1.3e-10 69.7 47 85.1
Duzib084G0140 Durio zibethinus HOM05D002320 ORTHO05D002428 1.3e-10 69.7 47 76.6
Glyma.03G106902 Glycine max HOM05D002320 ORTHO05D002428 1.3e-10 69.7 48 87.5
ECA234G4533 Erigeron canadensis HOM05D002320 ORTHO05D002428 1.6e-10 69.3 47 85.1
FvH4_7g09080 Fragaria vesca HOM05D002320 ORTHO05D002428 1.6e-10 69.3 48 87.5
FAN03G0444 Fragaria x ananassa HOM05D002320 ORTHO05D002428 1.6e-10 69.3 48 87.5
FAN06G0692 Fragaria x ananassa HOM05D002320 ORTHO05D002428 1.6e-10 69.3 48 87.5
FAN10G2100 Fragaria x ananassa HOM05D002320 ORTHO05D002428 1.6e-10 69.3 48 87.5
THA.LOC104814106 Tarenaya hassleriana HOM05D002320 ORTHO05D002428 1.6e-10 69.3 46 82.6
RcHm_v2.0_Chr1g0344931 Rosa chinensis HOM05D002320 ORTHO05D002428 2.1e-10 68.9 48 87.5
Glyma.08G340800 Glycine max HOM05D002320 ORTHO05D002428 3.6e-10 68.2 47 83.0
Rhsim07G0038400 Rhododendron simsii HOM05D002320 ORTHO05D002428 3.6e-10 68.2 45 86.7
GSVIVG01013279001 Vitis vinifera HOM05D002320 ORTHO05D002428 3.6e-10 68.2 47 78.7
TWI59G1296 Tripterygium wilfordii HOM05D002320 ORTHO05D002428 4.8e-10 67.8 46 89.1
Nitab4.5_0006060g0020 Nicotiana tabacum HOM05D002320 ORTHO05D002428 6.2e-10 67.4 47 80.9
FAN08G1966 Fragaria x ananassa HOM05D002320 ORTHO05D002428 1.1e-09 66.6 46 78.3
FAN13G1732 Fragaria x ananassa HOM05D002320 ORTHO05D002428 1.1e-09 66.6 46 78.3
Glyma.01G094800 Glycine max HOM05D002320 ORTHO05D002428 1.1e-09 66.6 47 80.9
Hma1.2p1_1672F.1_g296830 Hydrangea macrophylla HOM05D002320 ORTHO05D002428 1.1e-09 66.6 47 76.6
RcHm_v2.0_Chr7g0206481 Rosa chinensis HOM05D002320 ORTHO05D002428 1.1e-09 66.6 46 78.3
MD06G1044700 Malus domestica HOM05D002320 ORTHO05D002428 1.4e-09 66.2 46 80.4
FvH4_5g20710 Fragaria vesca HOM05D002320 ORTHO05D002428 2.4e-09 65.5 46 76.1
FAN04G2023 Fragaria x ananassa HOM05D002320 ORTHO05D002428 2.4e-09 65.5 46 76.1
FAN10G0730 Fragaria x ananassa HOM05D002320 ORTHO05D002428 2.4e-09 65.5 48 83.3
FAN18G0516 Fragaria x ananassa HOM05D002320 ORTHO05D002428 2.4e-09 65.5 46 76.1
SGA_v2.0_scaffold52G19259 Striga asiatica HOM05D002320 ORTHO05D002428 2.4e-09 65.5 47 80.9
Cfa010936 Carpinus fangiana HOM05D002320 ORTHO05D002428 3.1e-09 65.1 63 63.5
Sabra03G0055100 Salix brachista HOM05D002320 ORTHO05D002428 3.1e-09 65.1 47 72.3
Carub.0006s3724 Capsella rubella HOM05D002320 ORTHO05D002428 4.0e-09 64.7 47 80.9
Cpa.g.sc52.80 Carica papaya HOM05D002320 ORTHO05D002428 4.0e-09 64.7 47 80.9
FAN01G0449 Fragaria x ananassa HOM05D002320 ORTHO05D002428 4.0e-09 64.7 48 83.3
Gohir.D12G101700 Gossypium hirsutum HOM05D002320 ORTHO05D002428 4.0e-09 64.7 47 83.0
Psat3g153400 Pisum sativum HOM05D002320 ORTHO05D002428 4.0e-09 64.7 47 76.6
Potri.002G140000 Populus trichocarpa HOM05D002320 ORTHO05D002428 4.0e-09 64.7 47 80.9
Sabra01G0119500 Salix brachista HOM05D002320 ORTHO05D002428 4.0e-09 64.7 47 70.2
Os10g0565000 Oryza sativa ssp. japonica HOM05D002320 ORTHO05D002428 5.3e-09 64.3 47 74.5
TAR636G1800 Trochodendron aralioides HOM05D002320 ORTHO05D002428 5.3e-09 64.3 47 76.6
Gohir.A08G162000 Gossypium hirsutum HOM05D002320 ORTHO05D002428 6.9e-09 63.9 63 61.9
Manes.15G170800 Manihot esculenta HOM05D002320 ORTHO05D002428 6.9e-09 63.9 47 74.5
Cfa012350 Carpinus fangiana HOM05D002320 ORTHO05D002428 9.0e-09 63.5 46 76.1
Ciclev10026235m.g Citrus clementina HOM05D002320 ORTHO05D002428 9.0e-09 63.5 47 74.5
GSVIVG01018327001 Vitis vinifera HOM05D002320 ORTHO05D002428 9.0e-09 63.5 46 78.3
Ciclev10023356m.g Citrus clementina HOM05D002320 ORTHO05D002428 1.2e-08 63.2 47 74.5
Zm00001eb023920 Zea mays HOM05D002320 ORTHO05D002428 1.2e-08 63.2 45 75.6
Sabra02G0109300 Salix brachista HOM05D002320 ORTHO05D002428 1.5e-08 62.8 47 78.7
CiPaw.11G084600 Carya illinoinensis HOM05D002320 ORTHO05D002428 2.0e-08 62.4 46 73.9
COL.COLO4_06695 Corchorus olitorius HOM05D002320 ORTHO05D002428 2.0e-08 62.4 47 72.3
Gohir.D06G130300 Gossypium hirsutum HOM05D002320 ORTHO05D002428 2.0e-08 62.4 47 76.6
Lsat_1_v5_gn_3_15700 Lactuca sativa HOM05D002320 ORTHO05D002428 2.0e-08 62.4 46 80.4
SEGI_09274 Sequoiadendron giganteum HOM05D002320 ORTHO05D002428 2.0e-08 62.4 46 73.9
Atru.chr9.1154 Acer truncatum HOM05D002320 ORTHO05D002428 2.6e-08 62.0 47 72.3
ECA236G2100 Erigeron canadensis HOM05D002779 ORTHO05D003074 2.6e-08 62.0 47 76.6
Potri.014G052300 Populus trichocarpa HOM05D002320 ORTHO05D002428 2.6e-08 62.0 46 78.3
Oeu012025.1 Olea europaea HOM05D002320 ORTHO05D002428 4.4e-08 61.2 46 73.9
Phvul.003G226200 Phaseolus vulgaris HOM05D002320 ORTHO05D002428 5.8e-08 60.8 63 52.4
CAN.G572.28 Capsicum annuum HOM05D002320 ORTHO05D002428 9.9e-08 60.1 46 76.1
Peaxi162Scf00715g00009 Petunia axillaris HOM05D002320 ORTHO05D002428 9.9e-08 60.1 47 74.5
Aqoxy3G02604 Aquilegia oxysepala HOM05D002320 ORTHO05D002428 1.3e-07 59.7 47 72.3
Eucgr.D02140 Eucalyptus grandis HOM05D002320 ORTHO05D002428 1.3e-07 59.7 46 69.6
Lj1g0016906 Lotus japonicus HOM05D002320 ORTHO05D002428 1.3e-07 59.7 47 74.5
ATR0665G345 Amborella trichopoda HOM05D002320 ORTHO05D002428 1.7e-07 59.3 47 74.5
ClCG10G002090 Citrullus lanatus HOM05D002320 ORTHO05D002428 1.7e-07 59.3 45 73.3
Ah.12g053850 Amaranthus hybridus HOM05D001479 ORTHO05D001401 2.2e-07 58.9 46 71.7
AUR62018809 Chenopodium quinoa HOM05D002320 ORTHO05D002428 2.2e-07 58.9 46 71.7
EL10Ac5g12226 Beta vulgaris HOM05D002320 ORTHO05D002428 2.9e-07 58.5 46 67.4
PGR042G2252 Punica granatum HOM05D002320 ORTHO05D002428 2.9e-07 58.5 45 77.8
HanXRQChr01g0028011 Helianthus annuus HOM05D002320 ORTHO05D002428 3.8e-07 58.2 58 62.1
Nitab4.5_0000590g0020 Nicotiana tabacum HOM05D002320 ORTHO05D002428 3.8e-07 58.2 47 70.2
Nitab4.5_0026409g0010 Nicotiana tabacum HOM05D002320 ORTHO05D002428 3.8e-07 58.2 47 70.2
ClCG06G008100 Citrullus lanatus HOM05D002320 ORTHO05D002428 4.9e-07 57.8 45 75.6
MELO3C020368.2 Cucumis melo HOM05D002320 ORTHO05D002428 4.9e-07 57.8 45 75.6
CsaV3_2G011090 Cucumis sativus L. HOM05D002320 ORTHO05D002428 4.9e-07 57.8 45 75.6
Phvul.011G180000 Phaseolus vulgaris HOM05D002320 ORTHO05D002428 4.9e-07 57.8 63 52.4
AUR62007194 Chenopodium quinoa HOM05D002320 ORTHO05D002428 6.4e-07 57.4 46 69.6
Ca_22024_v3 Cicer arietinum L. HOM05D002320 ORTHO05D002428 6.4e-07 57.4 64 51.6
HanXRQChr13g0419161 Helianthus annuus HOM05D002320 ORTHO05D002428 6.4e-07 57.4 47 70.2
Carub.0004s1686 Capsella rubella HOM05D002320 ORTHO05D002428 8.4e-07 57.0 44 72.7
Hma1.2p1_1397F.1_g280690 Hydrangea macrophylla HOM05D002320 ORTHO05D002428 8.4e-07 57.0 47 72.3
BcaC09g50440 Brassica carinata HOM05D002320 ORTHO05D002428 1.1e-06 56.6 61 55.7
HanXRQChr03g0089611 Helianthus annuus HOM05D002320 ORTHO05D002428 1.1e-06 56.6 47 70.2
Manes.05G057300 Manihot esculenta HOM05D002320 ORTHO05D002428 1.1e-06 56.6 47 72.3
Mapoly0001s0505 Marchantia polymorpha HOM05D002320 ORTHO05D002428 1.1e-06 56.6 44 72.7
Hund11305 Selenicereus undatus HOM05D002320 ORTHO05D002428 1.1e-06 56.6 62 56.5
Cc08_g01460 Coffea canephora HOM05D002320 ORTHO05D002428 1.4e-06 56.2 45 73.3
ECA246G4725 Erigeron canadensis HOM05D002320 ORTHO05D002428 1.4e-06 56.2 46 71.7
Lj2A252G54 Lonicera japonica HOM05D002320 ORTHO05D002428 1.4e-06 56.2 45 73.3
PGSC0003DMG400001833 Solanum tuberosum HOM05D002320 ORTHO05D002428 1.4e-06 56.2 46 69.6
EL10Ac1g00731 Beta vulgaris HOM05D002320 ORTHO05D002428 1.9e-06 55.8 47 70.2
BcaB04g18383 Brassica carinata HOM05D002320 ORTHO05D002428 1.9e-06 55.8 46 67.4
CDE02G1803 Ceratophyllum demersum HOM05D002320 ORTHO05D002428 1.9e-06 55.8 44 72.7
AUR62034748 Chenopodium quinoa HOM05D002320 ORTHO05D002428 1.9e-06 55.8 46 67.4
Thhalv10028664m.g Eutrema salsugineum HOM05D002320 ORTHO05D002428 1.9e-06 55.8 47 72.3
HanXRQChr06g0167151 Helianthus annuus HOM05D002320 ORTHO05D002428 1.9e-06 55.8 47 72.3
ATR0193G028 Amborella trichopoda HOM05D002320 ORTHO05D003786 2.4e-06 55.5 46 65.2
CiPaw.12G056400 Carya illinoinensis HOM05D002320 ORTHO05D002428 2.4e-06 55.5 46 69.6
Ca_14792_v3 Cicer arietinum L. HOM05D002320 ORTHO05D002428 3.2e-06 55.1 47 68.1
ECA240G3835 Erigeron canadensis HOM05D002320 ORTHO05D002428 3.2e-06 55.1 47 66.0
Sp7g17100 Schrenkiella parvula HOM05D002320 ORTHO05D002428 3.2e-06 55.1 44 72.7
HPP92_012972 Vanilla planifolia HOM05D002320 ORTHO05D002428 3.2e-06 55.1 44 65.9
AUR62032088 Chenopodium quinoa HOM05D002320 ORTHO05D002428 4.2e-06 54.7 46 65.2
Ciclev10019866m.g Citrus clementina HOM05D002320 ORTHO05D002428 4.2e-06 54.7 47 70.2
Medtr4g099180 Medicago truncatula HOM05D002320 ORTHO05D002428 4.2e-06 54.7 63 52.4
TAR375G0074 Trochodendron aralioides HOM05D002320 ORTHO05D002428 4.2e-06 54.7 46 69.6
MSTRG.20668 Avicennia marina HOM05D002320 ORTHO05D002428 5.4e-06 54.3 47 68.1
A08p12860 Brassica napus HOM05D002320 ORTHO05D002428 5.4e-06 54.3 46 65.2
BraA08t33270Z Brassica rapa HOM05D002320 ORTHO05D002428 5.4e-06 54.3 46 65.2
Glyma.17G149400 Glycine max HOM05D002320 ORTHO05D002428 5.4e-06 54.3 47 63.8
SEGI_10019 Sequoiadendron giganteum HOM05D002320 ORTHO05D002428 5.4e-06 54.3 47 61.7
CARHR223660 Cardamine hirsuta HOM05D002320 ORTHO05D002428 7.1e-06 53.9 44 70.5
Lj4g0005880 Lotus japonicus HOM05D002320 ORTHO05D002428 7.1e-06 53.9 63 52.4
AT4G17080 Arabidopsis thaliana HOM05D002320 ORTHO05D002428 9.3e-06 53.5 44 70.5
BolC8t48432H Brassica oleracea HOM05D002320 ORTHO05D002428 9.3e-06 53.5 46 65.2
Thhalv10024873m.g Eutrema salsugineum HOM05D002320 ORTHO05D002428 9.3e-06 53.5 44 72.7
Gohir.D08G182000 Gossypium hirsutum HOM05D002320 ORTHO05D002428 9.3e-06 53.5 46 65.2
Gorai.004G190900 Gossypium raimondii HOM05D002320 ORTHO05D002428 9.3e-06 53.5 46 65.2
Nitab4.5_0000633g0150 Nicotiana tabacum HOM05D003354 ORTHO05D003786 9.3e-06 53.5 45 66.7
Peaxi162Scf00051g00625 Petunia axillaris HOM05D003354 ORTHO05D003786 9.3e-06 53.5 45 64.4
PGSC0003DMG400017560 Solanum tuberosum HOM05D003354 ORTHO05D003786 9.3e-06 53.5 45 64.4


User provided reference genes

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