Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu004249.1 Olea europaea HOM05D004688 ORTHO05D005490 4.8e-91 337.8 169 100.0
Dinv24334 Davidia involucrata HOM05D004688 ORTHO05D005490 3.7e-27 125.6 240 37.5
Hma1.2p1_0528F.1_g173050 Hydrangea macrophylla HOM05D004688 ORTHO05D005490 5.4e-26 121.7 250 36.0
Oeu047689.1 Olea europaea HOM05D004688 ORTHO05D005490 5.4e-26 121.7 236 39.0
Oeu037809.1 Olea europaea HOM05D004688 ORTHO05D005490 9.2e-26 120.9 236 38.1
Thecc.05G223200 Theobroma cacao HOM05D004688 ORTHO05D005490 9.2e-26 120.9 249 34.5
Cc04_g10300 Coffea canephora HOM05D004688 ORTHO05D005490 1.6e-25 120.2 254 35.8
CiPaw.05G212300 Carya illinoinensis HOM05D004688 ORTHO05D005490 3.5e-25 119.0 241 35.3
Migut.E01543 Erythranthe guttata HOM05D004688 ORTHO05D005490 1.0e-24 117.5 239 36.0
Migut.A00176 Erythranthe guttata HOM05D004688 ORTHO05D005490 1.7e-24 116.7 176 42.6
Cfa016079 Carpinus fangiana HOM05D004688 ORTHO05D005490 5.0e-24 115.2 232 36.2
Haze_00366 Corylus avellana HOM05D004688 ORTHO05D005490 6.6e-24 114.8 232 34.5
Duzib128G0049 Durio zibethinus HOM05D004688 ORTHO05D005490 6.6e-24 114.8 266 33.5
RhsimUnG0132900 Rhododendron simsii HOM05D004688 ORTHO05D005490 6.6e-24 114.8 251 34.3
Gohir.D13G162400 Gossypium hirsutum HOM05D004688 ORTHO05D005490 8.6e-24 114.4 228 35.5
COL.COLO4_15125 Corchorus olitorius HOM05D004688 ORTHO05D005490 1.9e-23 113.2 248 34.3
Duzib177G0832 Durio zibethinus HOM05D004688 ORTHO05D005490 1.9e-23 113.2 246 33.7
Gohir.A13G158100 Gossypium hirsutum HOM05D004688 ORTHO05D005490 1.9e-23 113.2 228 35.5
vmacro12865 Vaccinium macrocarpon HOM05D004688 ORTHO05D005490 4.3e-23 112.1 254 34.3
Duzib106G1350 Durio zibethinus HOM05D004688 ORTHO05D005490 7.3e-23 111.3 241 33.6
Gorai.013G184500 Gossypium raimondii HOM05D004688 ORTHO05D005490 7.3e-23 111.3 232 35.3
TWI18G0476 Tripterygium wilfordii HOM05D004688 ORTHO05D005490 7.3e-23 111.3 230 33.9
Gohir.A08G221644 Gossypium hirsutum HOM05D004688 ORTHO05D005490 9.5e-23 110.9 241 34.9
MD07G1032800 Malus domestica HOM05D004688 ORTHO05D005490 9.5e-23 110.9 220 38.6
QL09p020531 Quercus lobata HOM05D004688 ORTHO05D005490 9.5e-23 110.9 237 36.3
Oeu044132.1 Olea europaea HOM05D004688 ORTHO05D005490 1.2e-22 110.5 230 36.5
Peaxi162Scf00012g01425 Petunia axillaris HOM05D004688 ORTHO05D005490 1.2e-22 110.5 230 37.4
FvH4_7g34310 Fragaria vesca HOM05D004688 ORTHO05D005490 1.6e-22 110.2 234 35.0
FAN01G2619 Fragaria x ananassa HOM05D004688 ORTHO05D005490 1.6e-22 110.2 234 35.0
FAN03G0573 Fragaria x ananassa HOM05D004688 ORTHO05D005490 2.1e-22 109.8 234 35.0
TAR636G2823 Trochodendron aralioides HOM05D004688 ORTHO05D005490 2.8e-22 109.4 243 35.8
SGA_v2.0_scaffold163G38052 Striga asiatica HOM05D004688 ORTHO05D005490 3.6e-22 109.0 238 35.3
TWI12G0369 Tripterygium wilfordii HOM05D004688 ORTHO05D005490 4.7e-22 108.6 230 34.3
Gohir.D08G240400 Gossypium hirsutum HOM05D004688 ORTHO05D005490 6.2e-22 108.2 241 34.4
DCAR_030965 Daucus carota HOM05D004688 ORTHO05D005490 8.0e-22 107.8 231 35.1
Actinidia20087 Actinidia chinensis HOM05D004688 ORTHO05D005490 1.4e-21 107.1 241 34.9
MD01G1239500 Malus domestica HOM05D004688 ORTHO05D005490 1.4e-21 107.1 222 38.7
Nitab4.5_0000877g0060 Nicotiana tabacum HOM05D004688 ORTHO05D005490 1.4e-21 107.1 229 36.2
Aqoxy1G03166 Aquilegia oxysepala HOM05D004688 ORTHO05D005490 6.8e-21 104.8 235 34.5
MSTRG.14034 Avicennia marina HOM05D004688 ORTHO05D005490 6.8e-21 104.8 231 35.5
Manes.08G160300 Manihot esculenta HOM05D004688 ORTHO05D005490 6.8e-21 104.8 238 32.8
Manes.09G130000 Manihot esculenta HOM05D004688 ORTHO05D005490 6.8e-21 104.8 222 36.0
SalBow1G7515 Salvia bowleyana HOM05D004688 ORTHO05D005490 6.8e-21 104.8 231 35.5
TAR629G2324 Trochodendron aralioides HOM05D004688 ORTHO05D005490 6.8e-21 104.8 230 35.7
CSS0020442 Camellia sinensis var. sinensis HOM05D004688 ORTHO05D005490 1.2e-20 104.0 238 34.9
CSS0035319 Camellia sinensis var. sinensis HOM05D004688 ORTHO05D005490 1.2e-20 104.0 238 34.9
ClCG09G013160 Citrullus lanatus HOM05D004688 ORTHO05D005490 1.2e-20 104.0 228 36.0
Prupe.2G329400 Prunus persica HOM05D004688 ORTHO05D005490 1.2e-20 104.0 241 34.4
Gorai.004G255700 Gossypium raimondii HOM05D004688 ORTHO05D005490 1.5e-20 103.6 241 33.6
Nn4g25357 Nelumbo nucifera HOM05D004688 ORTHO05D005490 1.5e-20 103.6 240 32.9
Potri.019G042700 Populus trichocarpa HOM05D004688 ORTHO05D005490 1.5e-20 103.6 232 33.2
RcHm_v2.0_Chr1g0384701 Rosa chinensis HOM05D004688 ORTHO05D005490 1.5e-20 103.6 234 34.2
Ciclev10032005m.g Citrus clementina HOM05D004688 ORTHO05D005490 2.0e-20 103.2 232 33.2
Eucgr.E02431 Eucalyptus grandis HOM05D004688 ORTHO05D005490 2.6e-20 102.8 233 33.9
Solyc11g005810.2 Solanum lycopersicum HOM05D004688 ORTHO05D005490 2.6e-20 102.8 236 35.2
Sopen11g001770 Solanum pennellii HOM05D004688 ORTHO05D005490 2.6e-20 102.8 236 35.2
MELO3C014341.2 Cucumis melo HOM05D004688 ORTHO05D005490 3.4e-20 102.4 228 32.9
Sed0002645 Sechium edule HOM05D004688 ORTHO05D005490 3.4e-20 102.4 226 36.3
CiPaw.06G036300 Carya illinoinensis HOM05D004688 ORTHO05D005490 4.4e-20 102.1 255 32.2
Gohir.D03G055600 Gossypium hirsutum HOM05D004688 ORTHO05D005490 5.8e-20 101.7 248 31.9
Gorai.003G058400 Gossypium raimondii HOM05D004688 ORTHO05D005490 5.8e-20 101.7 248 31.9
HanXRQChr04g0116531 Helianthus annuus HOM05D004688 ORTHO05D005490 5.8e-20 101.7 227 34.4
Potri.013G076900 Populus trichocarpa HOM05D004688 ORTHO05D005490 7.5e-20 101.3 250 32.0
GSVIVG01024321001 Vitis vinifera HOM05D004688 ORTHO05D005490 7.5e-20 101.3 233 35.6
MSTRG.1666 Avicennia marina HOM05D004688 ORTHO05D005490 9.8e-20 100.9 230 33.5
Atru.chr12.1856 Acer truncatum HOM05D004688 ORTHO05D005490 1.3e-19 100.5 252 32.1
PSO782G0681 Papaver somniferum HOM05D004688 ORTHO05D005490 2.2e-19 99.8 231 32.9
PGSC0003DMG400028677 Solanum tuberosum HOM05D004688 ORTHO05D005490 3.7e-19 99.0 230 34.3
CsaV3_6G036850 Cucumis sativus L. HOM05D004688 ORTHO05D005490 4.9e-19 98.6 226 32.7
AUR62037307 Chenopodium quinoa HOM05D004688 ORTHO05D005490 1.4e-18 97.1 228 33.3
Gohir.A02G114600 Gossypium hirsutum HOM05D004688 ORTHO05D005490 1.4e-18 97.1 248 31.9
PSO063G1904 Papaver somniferum HOM05D004688 ORTHO05D005490 1.4e-18 97.1 231 32.5
Nn3g21937 Nelumbo nucifera HOM05D004688 ORTHO05D005490 2.4e-18 96.3 245 30.6
THA.LOC104821693 Tarenaya hassleriana HOM05D004688 ORTHO05D005490 3.2e-18 95.9 231 32.0
ECA236G0885 Erigeron canadensis HOM05D004688 ORTHO05D005490 4.1e-18 95.5 228 32.9
EL10Ac6g14347 Beta vulgaris HOM05D004688 ORTHO05D005490 5.4e-18 95.1 224 33.5
AUR62002842 Chenopodium quinoa HOM05D004688 ORTHO05D005490 7.0e-18 94.7 238 32.4
Sp7g25570 Schrenkiella parvula HOM05D004688 ORTHO05D005490 9.2e-18 94.4 256 28.5
THA.LOC104805719 Tarenaya hassleriana HOM05D004688 ORTHO05D005490 9.2e-18 94.4 229 31.4
Sed0013330 Sechium edule HOM05D004688 ORTHO05D005490 1.6e-17 93.6 247 30.8
VMungo1127G1418 Vigna mungo HOM05D004688 ORTHO05D005490 1.6e-17 93.6 250 32.0
Thhalv10025690m.g Eutrema salsugineum HOM05D004688 ORTHO05D005490 2.1e-17 93.2 229 31.0
Glyma.12G014100 Glycine max HOM05D004688 ORTHO05D005490 2.1e-17 93.2 233 32.2
arahy.Tifrunner.gnm1.ann1.N6YK28 Arachis hypogaea HOM05D004688 ORTHO05D005490 3.5e-17 92.4 261 31.4
Ca_19600_v3 Cicer arietinum L. HOM05D004688 ORTHO05D005490 3.5e-17 92.4 239 31.8
AT4G27620 Arabidopsis thaliana HOM05D004688 ORTHO05D005490 4.6e-17 92.0 248 30.2
arahy.Tifrunner.gnm1.ann1.8TRX11 Arachis hypogaea HOM05D004688 ORTHO05D005490 6.0e-17 91.7 261 33.0
PGR142G2085 Punica granatum HOM05D004688 ORTHO05D005490 6.0e-17 91.7 207 34.3
CARHR235320 Cardamine hirsuta HOM05D004688 ORTHO05D005490 7.8e-17 91.3 230 31.7
Lalb_Chr19g0140091 Lupinus albus HOM05D004688 ORTHO05D005490 1.0e-16 90.9 219 34.7
Aa31LG5G12060 Aethionema arabicum HOM05D004688 ORTHO05D003121 1.3e-16 90.5 239 29.7
Dinv03730 Davidia involucrata HOM05D004688 ORTHO05D005490 2.3e-16 89.7 72 68.1
Medtr0004s0230 Medicago truncatula HOM05D004688 ORTHO05D005490 3.0e-16 89.4 243 30.9
HanXRQChr15g0482031 Helianthus annuus HOM05D004688 ORTHO05D005490 3.9e-16 89.0 227 31.7
THA.LOC104823796 Tarenaya hassleriana HOM05D004688 ORTHO05D005490 6.6e-16 88.2 246 30.1
Ah.02g127670 Amaranthus hybridus HOM05D004688 ORTHO05D005490 8.6e-16 87.8 235 31.9
FAN10G2489 Fragaria x ananassa HOM05D004688 ORTHO05D005490 1.1e-15 87.4 55 76.4
Carub.0007s1323 Capsella rubella HOM05D004688 ORTHO05D005490 1.5e-15 87.0 239 31.0
Thhalv10025651m.g Eutrema salsugineum HOM05D004688 ORTHO05D005490 1.5e-15 87.0 242 30.6
MBI04_g30768_MAGBIO Magnolia biondii HOM05D004688 ORTHO05D005490 1.5e-15 87.0 235 33.2
unitig_578.g16583 Utricularia gibba HOM05D004688 ORTHO05D005490 1.9e-15 86.7 216 31.5
Sc07g0001340 Simmondsia chinensis HOM05D004688 ORTHO05D005490 2.5e-15 86.3 225 32.0
Psat0s643g0040 Pisum sativum HOM05D004688 ORTHO05D005490 3.3e-15 85.9 248 30.6
Ah.03g138260 Amaranthus hybridus HOM05D004688 ORTHO05D005490 4.3e-15 85.5 222 32.0
C01p23860 Brassica napus HOM05D004688 ORTHO05D005490 5.6e-15 85.1 212 33.5
A01p18910 Brassica napus HOM05D004688 ORTHO05D005490 7.3e-15 84.7 214 31.3
BraA01t01832Z Brassica rapa HOM05D004688 ORTHO05D005490 7.3e-15 84.7 214 31.3
CANSAT21G2449 Cannabis sativa HOM05D004688 ORTHO05D005490 7.3e-15 84.7 234 31.2
Glyma.09G222900 Glycine max HOM05D004688 ORTHO05D005490 7.3e-15 84.7 234 30.8
Lj2A605T63 Lonicera japonica HOM05D004688 ORTHO05D005490 7.3e-15 84.7 55 74.5
Lalb_Chr03g0024311 Lupinus albus HOM05D004688 ORTHO05D005490 1.2e-14 84.0 53 81.1
Sp7g25560 Schrenkiella parvula HOM05D004688 ORTHO05D005490 1.2e-14 84.0 242 30.6
Phvul.011G017000 Phaseolus vulgaris HOM05D004688 ORTHO05D005490 2.1e-14 83.2 66 65.2
BcaC09g50567 Brassica carinata HOM05D004688 ORTHO05D005490 3.6e-14 82.4 213 31.9
BolC1t02331H Brassica oleracea HOM05D004688 ORTHO05D005490 3.6e-14 82.4 213 31.9
AT4G27610 Arabidopsis thaliana HOM05D004688 ORTHO05D005490 6.2e-14 81.6 229 31.0
TPR.G9830 Trifolium pratense HOM05D004688 ORTHO05D005490 6.2e-14 81.6 65 64.6
AL7G25100 Arabidopsis lyrata HOM05D004688 ORTHO05D005490 8.1e-14 81.3 71 57.7
Nn1g09153 Nelumbo nucifera HOM05D004688 ORTHO05D005490 1.8e-13 80.1 228 31.1
Lj3g0005411 Lotus japonicus HOM05D004688 ORTHO05D005490 2.3e-13 79.7 55 72.7
BcaNung01652 Brassica carinata HOM05D004688 ORTHO05D005490 3.1e-13 79.3 215 30.2
CARHR235310 Cardamine hirsuta HOM05D004688 ORTHO05D005490 3.1e-13 79.3 230 30.9
Sabra19G0053300 Salix brachista HOM05D004688 ORTHO05D005490 5.2e-13 78.6 65 58.5
Carub.0007s1324 Capsella rubella HOM05D004688 ORTHO05D005490 6.8e-13 78.2 230 30.4
Sabra13G0065900 Salix brachista HOM05D004688 ORTHO05D005490 2.0e-12 76.6 74 58.1
Lalb_Chr01g0000741 Lupinus albus HOM05D004688 ORTHO05D005490 7.5e-12 74.7 76 55.3
Zm00001eb245400 Zea mays HOM05D004688 ORTHO05D005490 9.9e-12 74.3 223 32.3
BcaNung01654 Brassica carinata HOM05D004688 ORTHO05D005490 1.7e-11 73.6 239 29.3
AL7G25110 Arabidopsis lyrata HOM05D004688 ORTHO05D005490 3.7e-11 72.4 65 58.5
CDE02G1754 Ceratophyllum demersum HOM05D004688 ORTHO05D005490 4.9e-11 72.0 232 28.0
Lsat_1_v5_gn_7_27441 Lactuca sativa HOM05D005861 ORTHO05D007151 1.1e-10 70.9 54 66.7
Os02g0582200 Oryza sativa ssp. japonica HOM05D004688 ORTHO05D005490 1.1e-10 70.9 218 31.2
BcaC09g50575 Brassica carinata HOM05D004688 ORTHO05D005490 1.4e-10 70.5 59 59.3
A01p18850 Brassica napus HOM05D004688 ORTHO05D005490 1.4e-10 70.5 59 59.3
C01p23780 Brassica napus HOM05D004688 ORTHO05D005490 1.4e-10 70.5 59 59.3
BolC1t02329H Brassica oleracea HOM05D004688 ORTHO05D005490 1.4e-10 70.5 59 59.3
BraA01t01828Z Brassica rapa HOM05D004688 ORTHO05D005490 1.4e-10 70.5 59 59.3
CDE11G1120 Ceratophyllum demersum HOM05D004688 ORTHO05D005490 2.4e-10 69.7 232 26.3
A03p57380 Brassica napus HOM05D004688 ORTHO05D005490 3.2e-10 69.3 65 55.4
BraA03t14804Z Brassica rapa HOM05D004688 ORTHO05D005490 3.2e-10 69.3 65 55.4
Zm00001eb183340 Zea mays HOM05D004688 ORTHO05D005490 5.4e-10 68.6 220 30.5
Actinidia06638 Actinidia chinensis HOM05D004688 ORTHO05D005490 1.2e-09 67.4 69 55.1
Nitab4.5_0000805g0040 Nicotiana tabacum HOM05D004688 ORTHO05D005490 1.2e-09 67.4 58 58.6
BcaC06g32678 Brassica carinata HOM05D004688 ORTHO05D005490 2.1e-09 66.6 53 60.4
C07p55600 Brassica napus HOM05D004688 ORTHO05D005490 6.0e-09 65.1 65 53.8
BolC7t46040H Brassica oleracea HOM05D004688 ORTHO05D005490 6.0e-09 65.1 65 53.8
SEGI_37617 Sequoiadendron giganteum HOM05D004688 ORTHO05D005490 1.0e-08 64.3 61 57.4


User provided reference genes

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