Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu003998.1 Olea europaea HOM05D001920 ORTHO05D005408 0.0e+00 1196.4 654 100.0
Cc08_g10930 Coffea canephora HOM05D001920 ORTHO05D005408 6.0e-190 668.3 579 64.9
SalBow4G2367 Salvia bowleyana HOM05D001920 ORTHO05D005408 6.0e-190 668.3 593 64.9
Migut.D00410 Erythranthe guttata HOM05D001920 ORTHO05D005408 5.1e-189 665.2 581 67.0
Atru.chr7.1932 Acer truncatum HOM05D001920 ORTHO05D005408 1.6e-187 660.2 551 67.2
Ciclev10007867m.g Citrus clementina HOM05D001920 ORTHO05D005408 8.1e-187 657.9 550 66.5
Peaxi162Scf00694g00218 Petunia axillaris HOM05D001920 ORTHO05D005408 1.1e-186 657.5 547 67.3
MSTRG.14078 Avicennia marina HOM05D001920 ORTHO05D005408 5.2e-186 655.2 537 68.7
Nitab4.5_0004053g0020 Nicotiana tabacum HOM05D001920 ORTHO05D005408 5.2e-186 655.2 552 67.2
CSS0047067 Camellia sinensis var. sinensis HOM05D001920 ORTHO05D005408 1.5e-185 653.7 577 64.5
vmacro07770 Vaccinium macrocarpon HOM05D001920 ORTHO05D005408 5.8e-185 651.7 577 63.6
Cpa.g.sc222.19 Carica papaya HOM05D001920 ORTHO05D005408 1.7e-184 650.2 510 69.2
Dinv12437 Davidia involucrata HOM05D001920 ORTHO05D005408 2.9e-184 649.4 539 68.8
Haze_18151 Corylus avellana HOM05D001920 ORTHO05D005408 1.2e-182 644.0 579 64.4
Actinidia29326 Actinidia chinensis HOM05D001920 ORTHO05D005408 2.1e-182 643.3 596 62.9
Duzib187G1306 Durio zibethinus HOM05D001920 ORTHO05D005408 2.1e-182 643.3 552 65.8
HanXRQChr10g0309741 Helianthus annuus HOM05D001920 ORTHO05D005408 3.5e-182 642.5 571 63.0
CiPaw.15G036600 Carya illinoinensis HOM05D001920 ORTHO05D005408 6.0e-182 641.7 547 65.4
PGSC0003DMG400006851 Solanum tuberosum HOM05D001920 ORTHO05D005408 1.7e-181 640.2 535 67.1
CsaV3_4G035800 Cucumis sativus L. HOM05D001920 ORTHO05D005408 2.3e-181 639.8 524 67.6
COL.COLO4_21094 Corchorus olitorius HOM05D001920 ORTHO05D005408 3.9e-181 639.0 573 63.9
Cfa017979 Carpinus fangiana HOM05D001920 ORTHO05D005408 5.1e-181 638.6 578 63.3
CAN.G219.68 Capsicum annuum HOM05D001920 ORTHO05D005408 6.6e-181 638.3 536 66.6
Potri.006G225500 Populus trichocarpa HOM05D001920 ORTHO05D005408 6.6e-181 638.3 542 66.4
RhsimUnG0209800 Rhododendron simsii HOM05D001920 ORTHO05D005408 6.6e-181 638.3 543 65.4
FAN27G2437 Fragaria x ananassa HOM05D001920 ORTHO05D005408 4.3e-180 635.6 587 61.7
CANSAT11G1997 Cannabis sativa HOM05D001920 ORTHO05D005408 9.6e-180 634.4 566 63.4
Thecc.09G057700 Theobroma cacao HOM05D001920 ORTHO05D005408 2.8e-179 632.9 557 65.0
Gohir.D08G268800 Gossypium hirsutum HOM05D001920 ORTHO05D005408 3.6e-179 632.5 544 65.3
Gorai.004G286500 Gossypium raimondii HOM05D001920 ORTHO05D005408 3.6e-179 632.5 544 65.3
HanXRQChr12g0359101 Helianthus annuus HOM05D001920 ORTHO05D005408 4.7e-179 632.1 567 62.6
Migut.E01586 Erythranthe guttata HOM05D001920 ORTHO05D005408 1.4e-178 630.6 581 63.7
FAN20G0594 Fragaria x ananassa HOM05D001920 ORTHO05D005408 4.0e-178 629.0 556 63.5
TAR626G1364 Trochodendron aralioides HOM05D001920 ORTHO05D005408 4.0e-178 629.0 548 64.8
Gohir.A08G247700 Gossypium hirsutum HOM05D001920 ORTHO05D005408 5.2e-178 628.6 543 65.2
FvH4_2g31510 Fragaria vesca HOM05D001920 ORTHO05D005408 1.2e-177 627.5 541 64.7
Solyc01g087650.4 Solanum lycopersicum HOM05D001920 ORTHO05D005408 1.5e-177 627.1 534 66.1
RcHm_v2.0_Chr6g0311281 Rosa chinensis HOM05D001920 ORTHO05D005408 3.4e-177 625.9 593 60.7
Sopen01g034610 Solanum pennellii HOM05D001920 ORTHO05D005408 4.4e-177 625.5 537 65.7
unitig_8.g5056 Utricularia gibba HOM05D001920 ORTHO05D005408 9.9e-177 624.4 554 64.3
Prupe.1G408800 Prunus persica HOM05D001920 ORTHO05D005408 1.3e-176 624.0 521 66.8
Sabra06G0174400 Salix brachista HOM05D001920 ORTHO05D005408 1.3e-176 624.0 542 64.9
TWI63G1659 Tripterygium wilfordii HOM05D001920 ORTHO05D005408 1.3e-176 624.0 575 61.7
Manes.16G082600 Manihot esculenta HOM05D001920 ORTHO05D005408 1.7e-176 623.6 516 67.4
ClCG05G018020 Citrullus lanatus HOM05D001920 ORTHO05D005408 3.8e-176 622.5 550 64.4
FAN15G2558 Fragaria x ananassa HOM05D001920 ORTHO05D005408 3.8e-176 622.5 566 62.7
Lj7A258G43 Lonicera japonica HOM05D001920 ORTHO05D005408 3.8e-176 622.5 550 65.5
Lalb_Chr22g0356171 Lupinus albus HOM05D001920 ORTHO05D005408 4.9e-176 622.1 577 61.7
Lsat_1_v5_gn_4_73880 Lactuca sativa HOM05D001920 ORTHO05D005408 8.4e-176 621.3 593 61.6
FAN24G1332 Fragaria x ananassa HOM05D001920 ORTHO05D005408 1.1e-175 620.9 555 62.7
VMungo0251G2102 Vigna mungo HOM05D001920 ORTHO05D005408 1.4e-175 620.5 530 65.5
PGR044G1731 Punica granatum HOM05D001920 ORTHO05D005408 3.2e-175 619.4 532 64.1
Phvul.003G267800 Phaseolus vulgaris HOM05D001920 ORTHO05D005408 7.1e-175 618.2 518 66.4
Glyma.02G043400 Glycine max HOM05D001920 ORTHO05D005408 1.6e-174 617.1 531 65.5
Glyma.16G120600 Glycine max HOM05D001920 ORTHO05D005408 2.1e-174 616.7 515 66.6
MD08G1065800 Malus domestica HOM05D001920 ORTHO05D005408 2.1e-174 616.7 558 63.3
TWI34G1596 Tripterygium wilfordii HOM05D001920 ORTHO05D005408 2.7e-174 616.3 519 65.7
GSVIVG01035413001 Vitis vinifera HOM05D001920 ORTHO05D005408 7.8e-174 614.8 514 66.7
Medtr8g074590 Medicago truncatula HOM05D001920 ORTHO05D005408 1.0e-173 614.4 523 66.3
Hund19436 Selenicereus undatus HOM05D001920 ORTHO05D005408 1.0e-173 614.4 549 63.2
A02p01310 Brassica napus HOM05D001920 ORTHO05D005408 5.1e-173 612.1 549 63.2
BraA02t05109Z Brassica rapa HOM05D001920 ORTHO05D005408 5.1e-173 612.1 549 63.2
Ah.09g228460 Amaranthus hybridus HOM05D001920 ORTHO05D005408 6.6e-173 611.7 554 61.7
Ca_03647_v3 Cicer arietinum L. HOM05D001920 ORTHO05D005408 6.6e-173 611.7 533 64.5
arahy.Tifrunner.gnm1.ann1.9L6JUF Arachis hypogaea HOM05D001920 ORTHO05D005408 1.1e-172 610.9 539 64.6
BcaC03g13404 Brassica carinata HOM05D001920 ORTHO05D005408 1.1e-172 610.9 549 63.2
C02p05530 Brassica napus HOM05D001920 ORTHO05D005408 1.1e-172 610.9 549 63.2
BolC2t06498H Brassica oleracea HOM05D001920 ORTHO05D005408 1.1e-172 610.9 549 63.2
EL10Ac8g19267 Beta vulgaris HOM05D001920 ORTHO05D005408 4.3e-172 609.0 552 61.6
AUR62031243 Chenopodium quinoa HOM05D001920 ORTHO05D005408 4.3e-172 609.0 531 64.4
DCAR_003139 Daucus carota HOM05D001920 ORTHO05D005408 7.3e-172 608.2 567 60.3
MD15G1055600 Malus domestica HOM05D001920 ORTHO05D005408 9.6e-172 607.8 563 61.8
Lj4g0027878 Lotus japonicus HOM05D001920 ORTHO05D005408 1.6e-171 607.1 534 65.4
Sp6g31610 Schrenkiella parvula HOM05D001920 ORTHO05D005408 2.8e-171 606.3 531 64.2
AL6G22770 Arabidopsis lyrata HOM05D001920 ORTHO05D005408 3.6e-171 605.9 549 63.0
Psat4g103240 Pisum sativum HOM05D001920 ORTHO05D005408 3.6e-171 605.9 560 62.5
arahy.Tifrunner.gnm1.ann1.UJN8CA Arachis hypogaea HOM05D001920 ORTHO05D005408 4.8e-171 605.5 622 57.9
arahy.Tifrunner.gnm1.ann1.14SSX1 Arachis hypogaea HOM05D001920 ORTHO05D005408 6.2e-171 605.1 529 65.2
BolC3t13123H Brassica oleracea HOM05D001920 ORTHO05D005408 6.2e-171 605.1 542 63.3
Aqoxy6G00323 Aquilegia oxysepala HOM05D001920 ORTHO05D005408 1.1e-170 604.4 552 60.3
CARHR201150 Cardamine hirsuta HOM05D001920 ORTHO05D005408 1.8e-170 603.6 550 62.9
C03p06150 Brassica napus HOM05D001920 ORTHO05D005408 3.1e-170 602.8 542 63.3
Thhalv10013117m.g Eutrema salsugineum HOM05D001920 ORTHO05D005408 3.1e-170 602.8 549 62.8
Carub.0006s1052 Capsella rubella HOM05D001920 ORTHO05D005408 1.2e-169 600.9 532 63.9
RhsimUnG0018300 Rhododendron simsii HOM05D001920 ORTHO05D005408 3.4e-169 599.4 543 62.6
MBI05_g36626_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D005408 4.5e-169 599.0 514 61.9
THA.LOC104799157 Tarenaya hassleriana HOM05D001920 ORTHO05D005408 4.5e-169 599.0 553 62.6
BcaNung02634 Brassica carinata HOM05D001920 ORTHO05D005408 1.7e-168 597.0 532 63.5
QL02p000680 Quercus lobata HOM05D001920 ORTHO05D005408 6.4e-168 595.1 537 62.9
arahy.Tifrunner.gnm1.ann1.RZJX0Q Arachis hypogaea HOM05D001920 ORTHO05D005408 1.9e-167 593.6 523 64.2
Sc23g0005750 Simmondsia chinensis HOM05D001920 ORTHO05D005408 9.3e-167 591.3 541 62.7
ECA234G0290 Erigeron canadensis HOM05D001920 ORTHO05D005408 2.7e-166 589.7 588 58.0
CDE05G1481 Ceratophyllum demersum HOM05D001920 ORTHO05D005408 1.0e-165 587.8 530 61.3
Aa31LG3G15240 Aethionema arabicum HOM05D001920 ORTHO05D005408 1.3e-165 587.4 556 61.0
BraA03t09873Z Brassica rapa HOM05D001920 ORTHO05D005408 3.9e-165 585.9 569 59.4
PSO210G2773 Papaver somniferum HOM05D001920 ORTHO05D005408 4.3e-164 582.4 552 60.0
A03p05350 Brassica napus HOM05D001920 ORTHO05D005408 3.7e-163 579.3 528 62.1
PSO210G7360 Papaver somniferum HOM05D001920 ORTHO05D005408 1.8e-162 577.0 559 58.9
MELO3C016885.2 Cucumis melo HOM05D001920 ORTHO05D005408 3.1e-162 576.2 541 61.6
AUR62027456 Chenopodium quinoa HOM05D001920 ORTHO05D005408 9.9e-161 571.2 562 59.6
ATR0686G037 Amborella trichopoda HOM05D001920 ORTHO05D005408 6.4e-160 568.5 544 60.1
BcaB01g05437 Brassica carinata HOM05D001920 ORTHO05D005408 1.8e-157 560.5 512 62.1
Oeu004630.1 Olea europaea HOM05D001920 ORTHO05D005408 2.4e-154 550.1 595 57.3
Actinidia03557 Actinidia chinensis HOM05D001920 ORTHO05D005408 2.2e-152 543.5 505 61.6
Nn8g38775 Nelumbo nucifera HOM05D001920 ORTHO05D005408 6.0e-150 535.4 474 63.9
AT5G11980 Arabidopsis thaliana HOM05D001920 ORTHO05D005408 2.3e-149 533.5 472 65.0
HPP92_005529 Vanilla planifolia HOM05D001920 ORTHO05D005408 1.5e-148 530.8 573 54.1
Os12g0538300 Oryza sativa ssp. japonica HOM05D001920 ORTHO05D005408 1.3e-147 527.7 517 57.4
Zm00001eb006920 Zea mays HOM05D001920 ORTHO05D005408 5.9e-145 518.8 506 57.7
Zm00001eb401360 Zea mays HOM05D001920 ORTHO05D005408 7.6e-145 518.5 514 56.8
Hma1.2p1_0077F.1_g039730 Hydrangea macrophylla HOM05D001920 ORTHO05D005408 1.0e-141 508.1 479 62.4
Eucgr.C03063 Eucalyptus grandis HOM05D001920 ORTHO05D005408 9.1e-138 495.0 510 55.9
Nitab4.5_0000707g0110 Nicotiana tabacum HOM05D001920 ORTHO05D005408 1.7e-136 490.7 520 58.8
Mapoly0087s0038 Marchantia polymorpha HOM05D001920 ORTHO05D005408 6.7e-133 478.8 502 54.2
SGA_v2.0_scaffold169G38703 Striga asiatica HOM05D001920 ORTHO05D005408 8.8e-133 478.4 576 53.3
Sed0005880 Sechium edule HOM05D001920 ORTHO05D005408 3.8e-128 463.0 422 61.1
MBI18_g38862_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D005408 6.1e-126 455.7 511 51.9
Sed0005137 Sechium edule HOM05D001920 ORTHO05D005408 8.0e-126 455.3 452 57.3
SMO356G0672 Selaginella moellendorffii HOM05D001920 ORTHO05D005408 1.0e-125 454.9 520 51.7
Hma1.2p1_0196F.1_g084800 Hydrangea macrophylla HOM05D001920 ORTHO05D005408 3.0e-125 453.4 540 52.6
Pp3c10_11790 Physcomitrium patens HOM05D001920 ORTHO05D005408 2.6e-124 450.3 508 50.6
TPR.G14979 Trifolium pratense HOM05D001920 ORTHO05D005408 1.7e-123 447.6 405 65.2
CBR_g34170 Chara braunii HOM05D001920 ORTHO05D005408 4.7e-118 429.5 488 49.8
SHI18715 Sapria himalayana HOM05D001920 ORTHO05D005408 2.6e-116 423.7 459 54.0
RcHm_v2.0_Chr4g0442191 Rosa chinensis HOM05D001920 ORTHO05D005408 3.4e-100 370.2 499 47.3
FAN07G1923 Fragaria x ananassa HOM05D001920 ORTHO05D005408 1.6e-97 361.3 487 47.8
SGA_v2.0_scaffold163G38013 Striga asiatica HOM05D001920 ORTHO05D005408 3.5e-97 360.1 345 64.1
FvH4_4g33140 Fragaria vesca HOM05D001920 ORTHO05D005408 3.8e-96 356.7 490 48.2
FAN12G3829 Fragaria x ananassa HOM05D001920 ORTHO05D005408 5.0e-96 356.3 490 47.8
FAN22G0219 Fragaria x ananassa HOM05D001920 ORTHO05D005408 4.0e-93 346.7 467 47.5
Pp3c2_14420 Physcomitrium patens HOM05D001920 ORTHO05D005408 1.2e-86 325.1 451 44.1
Lj7C259T3 Lonicera japonica HOM05D001920 ORTHO05D005408 2.2e-83 314.3 319 59.2
Lj7C264G4 Lonicera japonica HOM05D001920 ORTHO05D005408 3.7e-83 313.5 482 42.9
PRCOL_00001520 Prasinoderma coloniale HOM05D001920 ORTHO05D005408 2.4e-74 284.3 538 37.2
Migut.A00111 Erythranthe guttata HOM05D001920 ORTHO05D005408 7.8e-73 279.3 171 86.5
CDE05G0360 Ceratophyllum demersum HOM05D001920 ORTHO05D005408 3.6e-70 270.4 185 67.6
FAN17G1736 Fragaria x ananassa HOM05D001920 ORTHO05D005408 4.0e-69 266.9 401 44.6
AagrBONN_evm.TU.Sc2ySwM_228.4615 Anthoceros agrestis HOM05D001920 ORTHO05D005408 3.4e-68 263.8 336 48.2
Gorai.009G043000 Gossypium raimondii HOM05D001920 ORTHO05D005408 1.1e-66 258.8 510 38.6
Cre10.g439650 Chlamydomonas reinhardtii HOM05D001920 ORTHO05D005408 4.0e-53 213.8 533 30.6
MBI13_g05979_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D005408 9.0e-53 212.6 379 39.1
FAN12G2252 Fragaria x ananassa HOM05D001920 ORTHO05D005408 4.6e-49 200.3 319 45.5
SEGI_36171 Sequoiadendron giganteum HOM05D001920 ORTHO05D000001 5.1e-48 196.8 139 74.1
Gohir.D05G042133 Gossypium hirsutum HOM05D001920 ORTHO05D005408 1.4e-45 188.7 454 34.4
arahy.Tifrunner.gnm1.ann1.NPWH83 Arachis hypogaea HOM05D001920 ORTHO05D005408 1.2e-41 175.6 105 79.0
Lj7A264G15 Lonicera japonica HOM05D001920 ORTHO05D005408 2.5e-39 167.9 107 83.2
MCO04G241 Micromonas commoda HOM05D001920 ORTHO05D005408 2.5e-39 167.9 450 30.0
Eucgr.L03492 Eucalyptus grandis HOM05D001920 ORTHO05D005408 8.4e-35 152.9 129 57.4
BcaNung02635 Brassica carinata HOM05D001920 ORTHO05D005408 1.9e-31 141.7 79 84.8
MSTRG.25967 Avicennia marina HOM05D001920 ORTHO05D005408 1.4e-29 135.6 381 31.0
Hma1.2p1_0196F.1_g084820 Hydrangea macrophylla HOM05D001920 ORTHO05D005408 9.0e-29 132.9 85 83.5
TPR.G36194 Trifolium pratense HOM05D001920 ORTHO05D005408 1.5e-28 132.1 77 88.3
CDE05G1717 Ceratophyllum demersum HOM05D001920 ORTHO05D005408 3.6e-25 120.9 87 70.1
Zm00001eb014540 Zea mays HOM05D000282 ORTHO05D000272 9.1e-21 106.3 76 69.7
TPR.G748 Trifolium pratense HOM05D001920 ORTHO05D005408 3.4e-20 104.4 65 80.0
TPR.G14973 Trifolium pratense HOM05D001920 ORTHO05D005408 5.5e-18 97.1 86 46.5
TPR.G36118 Trifolium pratense HOM05D001920 ORTHO05D005408 1.0e-16 92.8 54 87.0
MBI17_g36954_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D012920 1.4e-16 92.4 67 70.1
BcaC05g26027 Brassica carinata HOM05D001920 ORTHO05D024365 3.3e-15 87.8 164 39.6
SGA_v2.0_scaffold26G11215 Striga asiatica HOM05D001920 ORTHO05D024365 4.4e-15 87.4 50 88.0
ECA232G0588 Erigeron canadensis HOM05D000006 ORTHO05D000001 4.5e-12 77.4 64 65.6
C06p01410 Brassica napus HOM05D001920 ORTHO05D024365 1.7e-11 75.5 98 49.0
C05p19930 Brassica napus HOM05D001920 ORTHO05D024365 8.5e-11 73.2 53 69.8
ATR0009G024 Amborella trichopoda HOM05D001920 ORTHO05D005408 4.2e-10 70.9 64 57.8
BolC5t30691H Brassica oleracea HOM05D001920 ORTHO05D024365 1.8e-08 65.5 43 74.4
Lj7A259T19 Lonicera japonica HOM05D001920 ORTHO05D235283 1.5e-07 62.4 132 35.6


User provided reference genes

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