Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu003633.1 Olea europaea HOM05D004954 ORTHO05D006267 0.0e+00 1206.8 617 100.0
MSTRG.21308 Avicennia marina HOM05D004954 ORTHO05D006267 9.6e-307 1056.2 618 87.4
SalBow6G4493 Salvia bowleyana HOM05D004954 ORTHO05D006267 2.4e-305 1051.6 617 86.5
CSS0025127 Camellia sinensis var. sinensis HOM05D004954 ORTHO05D006267 5.3e-297 1023.8 618 84.5
Dinv10429 Davidia involucrata HOM05D004954 ORTHO05D006267 6.9e-297 1023.5 617 84.3
Duzib211G0600 Durio zibethinus HOM05D004954 ORTHO05D006267 5.8e-296 1020.4 618 83.7
Cc01_g16190 Coffea canephora HOM05D004954 ORTHO05D006267 2.9e-295 1018.1 616 83.6
Rhsim13G0052400 Rhododendron simsii HOM05D004954 ORTHO05D006267 3.2e-294 1014.6 641 80.7
Thecc.01G211600 Theobroma cacao HOM05D004954 ORTHO05D006267 1.6e-293 1012.3 618 83.3
Actinidia34548 Actinidia chinensis HOM05D004954 ORTHO05D006267 2.5e-291 1005.0 617 82.2
Migut.D00727 Erythranthe guttata HOM05D004954 ORTHO05D006267 5.7e-291 1003.8 614 84.2
MELO3C012723.2 Cucumis melo HOM05D004954 ORTHO05D006267 9.7e-291 1003.0 617 81.7
CsaV3_7G026900 Cucumis sativus L. HOM05D004954 ORTHO05D006267 1.3e-290 1002.7 614 81.6
Gohir.D07G166900 Gossypium hirsutum HOM05D004954 ORTHO05D006267 2.8e-290 1001.5 618 81.9
Gorai.N003600 Gossypium raimondii HOM05D004954 ORTHO05D006267 4.8e-290 1000.7 618 81.9
Sed0007567 Sechium edule HOM05D004954 ORTHO05D006267 6.3e-290 1000.3 617 81.7
Lj1C100T5 Lonicera japonica HOM05D004954 ORTHO05D006267 1.4e-289 999.2 615 83.1
Gohir.A07G159500 Gossypium hirsutum HOM05D004954 ORTHO05D006267 1.5e-288 995.7 618 81.6
THA.LOC104818994 Tarenaya hassleriana HOM05D004954 ORTHO05D006267 1.5e-288 995.7 617 80.7
unitig_37.g12142 Utricularia gibba HOM05D004954 ORTHO05D006267 3.4e-288 994.6 617 81.5
Prupe.8G191000 Prunus persica HOM05D004954 ORTHO05D006267 5.9e-288 993.8 618 81.4
ECA248G3210 Erigeron canadensis HOM05D004954 ORTHO05D006267 1.3e-287 992.6 618 81.7
QL09p046153 Quercus lobata HOM05D004954 ORTHO05D006267 1.3e-287 992.6 617 81.8
ClCG09G008140 Citrullus lanatus HOM05D004954 ORTHO05D006267 2.9e-287 991.5 617 81.0
Eucgr.H00730 Eucalyptus grandis HOM05D004954 ORTHO05D006267 2.9e-287 991.5 617 81.0
Actinidia23789 Actinidia chinensis HOM05D004954 ORTHO05D006267 3.8e-287 991.1 656 78.4
MD10G1152500 Malus domestica HOM05D004954 ORTHO05D006267 5.0e-287 990.7 617 80.7
Potri.014G191100 Populus trichocarpa HOM05D004954 ORTHO05D006267 6.5e-287 990.3 617 81.8
CSS0003762 Camellia sinensis var. sinensis HOM05D004954 ORTHO05D006267 1.1e-286 989.6 619 82.2
TWI18G0293 Tripterygium wilfordii HOM05D004954 ORTHO05D006267 5.5e-286 987.3 618 80.4
PGR044G2625 Punica granatum HOM05D004954 ORTHO05D006267 3.6e-285 984.6 614 80.1
CiPaw.13G054900 Carya illinoinensis HOM05D004954 ORTHO05D006267 7.9e-285 983.4 618 80.6
Dinv28815 Davidia involucrata HOM05D004954 ORTHO05D006267 1.0e-284 983.0 618 81.1
CANSAT01G1324 Cannabis sativa HOM05D004954 ORTHO05D006267 1.4e-284 982.6 618 79.9
RcHm_v2.0_Chr6g0282881 Rosa chinensis HOM05D004954 ORTHO05D006267 1.8e-284 982.2 617 80.2
SGA_v2.0_scaffold29G12103 Striga asiatica HOM05D004954 ORTHO05D006267 3.9e-284 981.1 574 86.6
FAN24G2804 Fragaria x ananassa HOM05D004954 ORTHO05D006267 6.7e-284 980.3 624 79.6
Atru.chr5.2285 Acer truncatum HOM05D004954 ORTHO05D006267 1.1e-283 979.5 618 79.8
DCAR_012691 Daucus carota HOM05D004954 ORTHO05D006267 7.4e-283 976.9 621 79.9
Ciclev10004559m.g Citrus clementina HOM05D004954 ORTHO05D006267 3.7e-282 974.5 618 79.9
HanXRQChr01g0007231 Helianthus annuus HOM05D004954 ORTHO05D006267 3.7e-282 974.5 618 79.8
FAN27G0710 Fragaria x ananassa HOM05D004954 ORTHO05D006267 4.1e-281 971.1 628 78.8
Thhalv10003836m.g Eutrema salsugineum HOM05D004954 ORTHO05D006267 2.2e-279 965.3 616 78.7
CAN.G874.27 Capsicum annuum HOM05D004954 ORTHO05D006267 5.0e-279 964.1 617 79.4
AT5G48520 Arabidopsis thaliana HOM05D004954 ORTHO05D006267 1.9e-278 962.2 616 78.4
C07p39210 Brassica napus HOM05D004954 ORTHO05D006267 7.2e-278 960.3 616 77.6
A06p39130 Brassica napus HOM05D004954 ORTHO05D006267 9.4e-278 959.9 616 77.8
BolC7t44441H Brassica oleracea HOM05D004954 ORTHO05D006267 2.1e-277 958.7 616 77.6
Sp2g18880 Schrenkiella parvula HOM05D004954 ORTHO05D006267 6.1e-277 957.2 616 78.2
Sopen06g034480 Solanum pennellii HOM05D004954 ORTHO05D006267 1.0e-276 956.4 615 79.2
PSO170G3087 Papaver somniferum HOM05D004954 ORTHO05D006267 3.9e-276 954.5 612 78.1
Solyc06g083090.4 Solanum lycopersicum HOM05D004954 ORTHO05D006267 3.9e-276 954.5 615 78.9
Carub.0008s0810 Capsella rubella HOM05D004954 ORTHO05D006267 1.1e-275 953.0 616 77.8
PSO063G7187 Papaver somniferum HOM05D004954 ORTHO05D006267 1.1e-275 953.0 612 77.8
Lalb_Chr19g0124251 Lupinus albus HOM05D004954 ORTHO05D006267 2.6e-275 951.8 617 78.0
vmacro21304 Vaccinium macrocarpon HOM05D004954 ORTHO05D006267 3.3e-275 951.4 753 68.1
Nn8g39913 Nelumbo nucifera HOM05D004954 ORTHO05D006267 5.7e-275 950.7 615 78.5
BraA06t26827Z Brassica rapa HOM05D004954 ORTHO05D006267 2.2e-271 938.7 649 73.8
Haze_25215 Corylus avellana HOM05D004954 ORTHO05D006267 6.5e-271 937.2 684 71.9
Glyma.17G145700 Glycine max HOM05D004954 ORTHO05D006267 1.9e-270 935.6 619 76.6
EL10Ac5g10627 Beta vulgaris HOM05D004954 ORTHO05D006267 2.5e-270 935.3 609 76.4
VMungo0251G2039 Vigna mungo HOM05D004954 ORTHO05D006267 3.2e-270 934.9 618 76.9
Hund09467 Selenicereus undatus HOM05D004954 ORTHO05D006267 5.5e-270 934.1 618 76.2
Phvul.003G003500 Phaseolus vulgaris HOM05D004954 ORTHO05D006267 9.4e-270 933.3 618 76.7
Ah.11g051040 Amaranthus hybridus HOM05D004954 ORTHO05D006267 2.7e-269 931.8 644 73.8
MBI18_g30537_MAGBIO Magnolia biondii HOM05D004954 ORTHO05D006267 3.6e-269 931.4 628 76.0
arahy.Tifrunner.gnm1.ann1.4YG7MF Arachis hypogaea HOM05D004954 ORTHO05D006267 1.8e-268 929.1 618 76.5
arahy.Tifrunner.gnm1.ann1.E22JQ7 Arachis hypogaea HOM05D004954 ORTHO05D006267 1.8e-268 929.1 618 76.5
BcaC06g30786 Brassica carinata HOM05D004954 ORTHO05D006267 3.9e-268 927.9 616 75.6
Nitab4.5_0011983g0020 Nicotiana tabacum HOM05D004954 ORTHO05D006267 2.0e-267 925.6 614 77.5
Peaxi162Scf01242g00120 Petunia axillaris HOM05D004954 ORTHO05D006267 2.8e-266 921.8 617 76.8
Aqoxy7G02924 Aquilegia oxysepala HOM05D004954 ORTHO05D006267 3.7e-266 921.4 613 76.5
Lj2g0006494 Lotus japonicus HOM05D004954 ORTHO05D006267 8.2e-266 920.2 617 76.0
Nitab4.5_0002463g0060 Nicotiana tabacum HOM05D004954 ORTHO05D006267 2.4e-265 918.7 616 76.9
DCAR_018627 Daucus carota HOM05D004954 ORTHO05D006267 4.5e-264 914.4 618 75.4
TPR.G29775 Trifolium pratense HOM05D004954 ORTHO05D006267 1.0e-263 913.3 623 74.6
Sopen06g034490 Solanum pennellii HOM05D004954 ORTHO05D006267 2.2e-263 912.1 599 77.8
Medtr1g038570 Medicago truncatula HOM05D004954 ORTHO05D006267 8.0e-261 903.7 622 74.0
ATR0824G007 Amborella trichopoda HOM05D004954 ORTHO05D006267 4.0e-260 901.4 615 73.5
Solyc06g083100.2 Solanum lycopersicum HOM05D004954 ORTHO05D006267 4.0e-260 901.4 601 77.0
Manes.13G054100 Manihot esculenta HOM05D004954 ORTHO05D006267 1.2e-256 889.8 540 82.8
Aa31sc420G20 Aethionema arabicum HOM05D004954 ORTHO05D006267 3.8e-255 884.8 582 76.8
AUR62008123 Chenopodium quinoa HOM05D004954 ORTHO05D006267 2.6e-251 872.1 633 71.6
AUR62028702 Chenopodium quinoa HOM05D004954 ORTHO05D006267 5.4e-249 864.4 617 72.3
HPP92_017515 Vanilla planifolia HOM05D004954 ORTHO05D006267 2.7e-248 862.1 615 70.4
TAR375G0531 Trochodendron aralioides HOM05D004954 ORTHO05D006267 5.0e-247 857.8 639 70.4
FvH4_2g17860 Fragaria vesca HOM05D004954 ORTHO05D006267 4.5e-240 834.7 516 80.8
Cfa002884 Carpinus fangiana HOM05D004954 ORTHO05D006267 1.2e-237 826.6 516 80.0
CDE04G1241 Ceratophyllum demersum HOM05D004954 ORTHO05D006267 1.2e-235 820.1 615 69.8
Os06g0186500 Oryza sativa ssp. japonica HOM05D004954 ORTHO05D006267 4.9e-234 814.7 616 66.4
Psat6g025280 Pisum sativum HOM05D004954 ORTHO05D006267 1.4e-233 813.1 582 71.6
Sabra14G0144200 Salix brachista HOM05D004954 ORTHO05D006267 3.2e-233 812.0 513 81.3
Ca_12404_v3 Cicer arietinum L. HOM05D004954 ORTHO05D006267 7.8e-232 807.4 623 68.2
Lsat_1_v5_gn_5_178381 Lactuca sativa HOM05D004954 ORTHO05D006267 2.3e-215 752.7 566 70.8
Pp3c20_5680 Physcomitrium patens HOM05D004954 ORTHO05D006267 2.4e-212 742.7 616 59.3
Atru.chr12.963 Acer truncatum HOM05D004954 ORTHO05D006267 4.4e-211 738.4 446 82.3
Sc17g0001680 Simmondsia chinensis HOM05D004954 ORTHO05D006267 2.9e-210 735.7 468 78.8
SMO367G0402 Selaginella moellendorffii HOM05D004954 ORTHO05D006267 6.9e-204 714.5 619 57.7
FAN15G2379 Fragaria x ananassa HOM05D004954 ORTHO05D006267 1.7e-202 709.9 557 68.2
Mapoly0098s0023 Marchantia polymorpha HOM05D004954 ORTHO05D006267 7.8e-200 701.0 615 57.9
AagrBONN_evm.TU.Sc2ySwM_344.252 Anthoceros agrestis HOM05D004954 ORTHO05D006267 2.1e-181 639.8 649 50.4
Cpa.g.sc8.76 Carica papaya HOM05D004954 ORTHO05D006267 5.1e-167 592.0 361 83.4
Os07g0185700 Oryza sativa ssp. japonica HOM05D004954 ORTHO05D006267 6.9e-164 581.6 616 49.4
CARHR183510 Cardamine hirsuta HOM05D004954 ORTHO05D006267 1.6e-160 570.5 360 79.4
GSVIVG01006234001 Vitis vinifera HOM05D004954 ORTHO05D006267 4.8e-157 558.9 494 64.4
COL.COLO4_03294 Corchorus olitorius HOM05D004954 ORTHO05D006267 5.3e-156 555.4 342 83.0
Zm00001eb301770 Zea mays HOM05D004954 ORTHO05D006267 7.2e-153 545.0 616 46.8
arahy.Tifrunner.gnm1.ann1.R4R8P3 Arachis hypogaea HOM05D004954 ORTHO05D006267 9.1e-140 501.5 391 67.8
Zm00001eb278340 Zea mays HOM05D004954 ORTHO05D006267 9.4e-137 491.5 364 68.4
CBR_g32699 Chara braunii HOM05D004954 ORTHO05D006267 6.6e-122 442.2 522 44.8
SMO302G0009 Selaginella moellendorffii HOM05D004954 ORTHO05D006267 2.3e-119 433.7 597 44.1
MD05G1162300 Malus domestica HOM05D004954 ORTHO05D006267 6.2e-112 409.1 376 61.7
vmacro21300 Vaccinium macrocarpon HOM05D004954 ORTHO05D006267 2.0e-110 404.1 284 75.0
MD05G1161600 Malus domestica HOM05D004954 ORTHO05D006267 3.1e-95 353.6 458 49.6
GSVIVG01002254001 Vitis vinifera HOM05D004954 ORTHO05D006267 6.7e-74 282.7 175 81.7
COL.COLO4_03295 Corchorus olitorius HOM05D004954 ORTHO05D006267 1.3e-72 278.5 171 81.9
SEGI_36119 Sequoiadendron giganteum HOM05D004954 ORTHO05D006267 1.4e-68 265.0 186 71.0
FAN15G2003 Fragaria x ananassa HOM05D004954 ORTHO05D006267 2.1e-59 234.6 152 77.6
Sc17g0001690 Simmondsia chinensis HOM05D004954 ORTHO05D006267 6.1e-59 233.0 144 79.9
FAN15G2507 Fragaria x ananassa HOM05D004954 ORTHO05D006267 2.2e-53 214.5 134 81.3
Cpa.g.sc8.77 Carica papaya HOM05D004954 ORTHO05D006267 2.0e-49 201.4 117 83.8
Atru.chr12.964 Acer truncatum HOM05D004954 ORTHO05D006267 1.3e-45 188.7 151 66.2
MD05G1161700 Malus domestica HOM05D004954 ORTHO05D006267 2.1e-43 181.4 122 75.4
SEGI_30399 Sequoiadendron giganteum HOM05D004954 ORTHO05D006267 3.6e-43 180.6 138 61.6
MBI18_g37244_MAGBIO Magnolia biondii HOM05D004954 ORTHO05D006267 2.3e-42 177.9 105 79.0
Sabra14G0144300 Salix brachista HOM05D004954 ORTHO05D006267 5.7e-41 173.3 106 78.3
VMungo0647G2582 Vigna mungo HOM05D004954 ORTHO05D006267 2.6e-38 164.5 102 82.4
Ca_12408_v3 Cicer arietinum L. HOM05D004954 ORTHO05D006267 4.0e-34 150.6 178 48.3
MD05G1160200 Malus domestica HOM05D004954 ORTHO05D006267 1.6e-30 138.7 93 77.4
VMungo0647G1109 Vigna mungo HOM05D004954 ORTHO05D006267 1.9e-28 131.7 100 70.0
Ca_12409_v3 Cicer arietinum L. HOM05D004954 ORTHO05D006267 3.0e-26 124.4 74 83.8
SEGI_32998 Sequoiadendron giganteum HOM05D004954 ORTHO05D006267 2.2e-24 118.2 84 73.8
CBR_g49514 Chara braunii HOM05D000019 ORTHO05D001702 8.3e-24 116.3 106 50.9
PGSC0003DMG400008807 Solanum tuberosum HOM05D004954 ORTHO05D006267 1.9e-20 105.1 58 81.0
PGSC0003DMG400020114 Solanum tuberosum HOM05D004954 ORTHO05D006267 1.9e-20 105.1 58 81.0
MD05G1162200 Malus domestica HOM05D004954 ORTHO05D006267 1.2e-19 102.4 58 77.6
QL09p053445 Quercus lobata HOM05D004954 ORTHO05D030058 1.2e-19 102.4 115 58.3
VMungo0464G0043 Vigna mungo HOM05D004954 ORTHO05D006267 8.8e-18 96.3 58 72.4
VMungo0720G1677 Vigna mungo HOM05D002055 ORTHO05D002120 8.8e-18 96.3 58 72.4
Cfa002883 Carpinus fangiana HOM05D020463 ORTHO05D022255 1.2e-17 95.9 54 81.5
Ciclev10018232m.g Citrus clementina HOM05D004954 ORTHO05D006267 2.0e-17 95.1 76 67.1
Hma1.2p1_0066F.1_g035760 Hydrangea macrophylla HOM05D004954 ORTHO05D006267 2.9e-13 81.3 56 62.5
Glyma.09G284100 Glycine max HOM05D004954 ORTHO05D006267 8.6e-13 79.7 50 70.0
TAR375G0464 Trochodendron aralioides HOM05D004954 ORTHO05D006267 1.4e-10 72.4 42 78.6
MD05G1162500 Malus domestica HOM05D004954 ORTHO05D006267 3.0e-10 71.2 80 47.5
CSS0000571 Camellia sinensis var. sinensis HOM05D004954 ORTHO05D014145 2.6e-09 68.2 48 79.2
Medtr3g114845 Medicago truncatula HOM05D004954 ORTHO05D006267 1.7e-08 65.5 51 52.9
QL09p053081 Quercus lobata HOM05D002786 ORTHO05D030058 6.4e-08 63.5 51 68.6
SEGI_31941 Sequoiadendron giganteum HOM05D004954 ORTHO05D006267 8.3e-08 63.2 129 36.4
Hma1.2p1_2056F.1_g312790 Hydrangea macrophylla HOM05D007286 ORTHO05D008955 1.6e-06 58.9 85 47.1
Hma1.2p1_0717F.1_g208260 Hydrangea macrophylla HOM05D007286 ORTHO05D008955 2.0e-06 58.5 34 82.4


User provided reference genes

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