Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu003067.1 Olea europaea HOM05D003065 ORTHO05D003802 6.8e-63 243.8 123 100.0
SalBow1G7597 Salvia bowleyana HOM05D003065 ORTHO05D003802 1.3e-26 123.2 115 57.4
Nitab4.5_0005894g0020 Nicotiana tabacum HOM05D003065 ORTHO05D003802 1.8e-26 122.9 107 62.6
Nitab4.5_0001176g0140 Nicotiana tabacum HOM05D003065 ORTHO05D003802 3.9e-26 121.7 107 61.7
Migut.H01221 Erythranthe guttata HOM05D003065 ORTHO05D003802 8.7e-26 120.6 115 57.4
Solyc12g005780.3 Solanum lycopersicum HOM05D003065 ORTHO05D003802 7.4e-25 117.5 111 57.7
Sopen12g001710 Solanum pennellii HOM05D003065 ORTHO05D003802 7.4e-25 117.5 111 57.7
PGSC0003DMG400026175 Solanum tuberosum HOM05D003065 ORTHO05D003802 7.4e-25 117.5 108 57.4
Sopen07g026170 Solanum pennellii HOM05D003065 ORTHO05D003802 1.2e-22 110.2 115 53.0
unitig_21.g20057 Utricularia gibba HOM05D003065 ORTHO05D003802 1.2e-22 110.2 118 52.5
Nitab4.5_0006207g0040 Nicotiana tabacum HOM05D003065 ORTHO05D003802 2.6e-22 109.0 111 54.1
SGA_v2.0_scaffold49G18335 Striga asiatica HOM05D003065 ORTHO05D003802 5.0e-21 104.8 117 50.4
Actinidia30511 Actinidia chinensis HOM05D003065 ORTHO05D003802 6.5e-21 104.4 111 51.4
CsaV3_2G035170 Cucumis sativus L. HOM05D003065 ORTHO05D003802 8.5e-21 104.0 113 50.4
Hma1.2p1_0613F.1_g189150 Hydrangea macrophylla HOM05D003065 ORTHO05D003802 8.5e-21 104.0 112 53.6
MELO3C019237.2 Cucumis melo HOM05D003065 ORTHO05D003802 1.1e-20 103.6 114 48.2
MSTRG.14153 Avicennia marina HOM05D003065 ORTHO05D003802 2.5e-20 102.4 117 47.9
VMungo1127G1760 Vigna mungo HOM05D003065 ORTHO05D003802 5.5e-20 101.3 114 50.9
GSVIVG01030621001 Vitis vinifera HOM05D003065 ORTHO05D003802 1.2e-19 100.1 116 49.1
Cfa014437 Carpinus fangiana HOM05D003065 ORTHO05D003802 1.6e-19 99.8 107 53.3
Lj8A123T53 Lonicera japonica HOM05D003065 ORTHO05D003802 1.6e-19 99.8 119 52.9
MD17G1093000 Malus domestica HOM05D003065 ORTHO05D003802 2.7e-19 99.0 116 51.7
CSS0049428 Camellia sinensis var. sinensis HOM05D003065 ORTHO05D003802 4.6e-19 98.2 116 50.0
MSTRG.12287 Avicennia marina HOM05D003065 ORTHO05D003802 7.9e-19 97.4 115 48.7
CiPaw.04G117500 Carya illinoinensis HOM05D003065 ORTHO05D003802 7.9e-19 97.4 106 50.9
Dinv02749 Davidia involucrata HOM05D003065 ORTHO05D003802 1.0e-18 97.1 139 44.6
Dinv18529 Davidia involucrata HOM05D003065 ORTHO05D003802 1.0e-18 97.1 139 44.6
Peaxi162Scf00007g01221 Petunia axillaris HOM05D003065 ORTHO05D003802 1.0e-18 97.1 63 73.0
PGR142G3240 Punica granatum HOM05D003065 ORTHO05D003802 1.0e-18 97.1 114 50.0
ECA233G0914 Erigeron canadensis HOM05D003065 ORTHO05D003802 1.4e-18 96.7 106 51.9
CiPaw.03G162600 Carya illinoinensis HOM05D003065 ORTHO05D003802 1.8e-18 96.3 115 48.7
SalBow1G7952 Salvia bowleyana HOM05D003065 ORTHO05D003802 2.3e-18 95.9 72 65.3
Phvul.011G106000 Phaseolus vulgaris HOM05D003065 ORTHO05D003802 6.7e-18 94.4 115 48.7
RcHm_v2.0_Chr2g0160041 Rosa chinensis HOM05D003065 ORTHO05D003802 8.8e-18 94.0 117 49.6
Cc05_g05030 Coffea canephora HOM05D003065 ORTHO05D003802 1.1e-17 93.6 57 80.7
Potri.017G038500 Populus trichocarpa HOM05D003065 ORTHO05D003802 1.1e-17 93.6 112 50.9
ATR0794G140 Amborella trichopoda HOM05D003065 ORTHO05D003802 1.5e-17 93.2 76 61.8
MD09G1105400 Malus domestica HOM05D003065 ORTHO05D003802 1.5e-17 93.2 116 49.1
HanXRQChr17g0560931 Helianthus annuus HOM05D003065 ORTHO05D003802 1.9e-17 92.8 105 50.5
Potri.007G121900 Populus trichocarpa HOM05D003065 ORTHO05D003802 1.9e-17 92.8 103 52.4
Sed0000552 Sechium edule HOM05D003065 ORTHO05D003802 1.9e-17 92.8 118 45.8
CANSAT64G1715 Cannabis sativa HOM05D003065 ORTHO05D003802 3.3e-17 92.0 118 49.2
PGR142G1323 Punica granatum HOM05D003065 ORTHO05D003802 3.3e-17 92.0 115 48.7
vmacro09325 Vaccinium macrocarpon HOM05D003065 ORTHO05D003802 4.3e-17 91.7 56 76.8
Gohir.A13G059500 Gossypium hirsutum HOM05D003065 ORTHO05D003802 5.7e-17 91.3 118 45.8
Ciclev10015457m.g Citrus clementina HOM05D003065 ORTHO05D003802 7.4e-17 90.9 114 50.0
Thecc.02G162000 Theobroma cacao HOM05D003065 ORTHO05D003802 7.4e-17 90.9 124 44.4
Aa31LG1G19430 Aethionema arabicum HOM05D003065 ORTHO05D003802 9.7e-17 90.5 141 39.7
ClCG02G008460 Citrullus lanatus HOM05D003065 ORTHO05D003802 9.7e-17 90.5 135 44.4
Gorai.013G071000 Gossypium raimondii HOM05D003065 ORTHO05D003802 9.7e-17 90.5 135 41.5
Prupe.3G220000 Prunus persica HOM05D003065 ORTHO05D003802 9.7e-17 90.5 108 49.1
Gohir.D13G062500 Gossypium hirsutum HOM05D003065 ORTHO05D003802 1.3e-16 90.1 135 41.5
Medtr4g046707 Medicago truncatula HOM05D003065 ORTHO05D003802 1.7e-16 89.7 124 42.7
Duzib248G1274 Durio zibethinus HOM05D003065 ORTHO05D003802 2.2e-16 89.4 120 44.2
Lalb_Chr01g0005571 Lupinus albus HOM05D003065 ORTHO05D003802 2.2e-16 89.4 119 46.2
Lalb_Chr03g0028881 Lupinus albus HOM05D003065 ORTHO05D003802 2.8e-16 89.0 103 54.4
Glyma.12G101300 Glycine max HOM05D003065 ORTHO05D003802 3.7e-16 88.6 113 47.8
Lsat_1_v5_gn_8_129420 Lactuca sativa HOM05D003065 ORTHO05D003802 3.7e-16 88.6 89 56.2
Atru.chr6.3154 Acer truncatum HOM05D003065 ORTHO05D003802 4.8e-16 88.2 113 46.0
CARHR004740 Cardamine hirsuta HOM05D003065 ORTHO05D003802 4.8e-16 88.2 133 40.6
Sabra07G0098600 Salix brachista HOM05D003065 ORTHO05D003802 4.8e-16 88.2 103 50.5
TAR626G0646 Trochodendron aralioides HOM05D003065 ORTHO05D003802 4.8e-16 88.2 94 54.3
PGSC0003DMG400024333 Solanum tuberosum HOM05D003065 ORTHO05D003802 6.3e-16 87.8 111 47.7
TWI75G1157 Tripterygium wilfordii HOM05D003065 ORTHO05D003802 8.2e-16 87.4 115 43.5
COL.COLO4_12981 Corchorus olitorius HOM05D003065 ORTHO05D003802 1.1e-15 87.0 52 78.8
DCAR_012955 Daucus carota HOM05D003065 ORTHO05D003802 1.1e-15 87.0 96 52.1
Carub.0004s1369 Capsella rubella HOM05D003065 ORTHO05D003802 1.4e-15 86.7 91 52.7
Nn1g03660 Nelumbo nucifera HOM05D003065 ORTHO05D003802 1.4e-15 86.7 114 49.1
FAN05G4232 Fragaria x ananassa HOM05D003065 ORTHO05D003802 1.8e-15 86.3 116 44.0
FAN09G1506 Fragaria x ananassa HOM05D003065 ORTHO05D003802 1.8e-15 86.3 116 44.0
TWI36G1576 Tripterygium wilfordii HOM05D003065 ORTHO05D003802 1.8e-15 86.3 104 45.2
AT1G05270 Arabidopsis thaliana HOM05D003065 ORTHO05D003802 2.4e-15 85.9 120 45.8
FAN14G1636 Fragaria x ananassa HOM05D003065 ORTHO05D003802 3.1e-15 85.5 116 43.1
AL1G15050 Arabidopsis lyrata HOM05D003065 ORTHO05D003802 4.1e-15 85.1 128 43.8
CARHR126150 Cardamine hirsuta HOM05D003065 ORTHO05D003802 4.1e-15 85.1 69 58.0
Sabra17G0025600 Salix brachista HOM05D003065 ORTHO05D003802 4.1e-15 85.1 56 75.0
THA.LOC104800983 Tarenaya hassleriana HOM05D003065 ORTHO05D003802 5.3e-15 84.7 70 60.0
arahy.Tifrunner.gnm1.ann1.Y3QZTF Arachis hypogaea HOM05D003065 ORTHO05D003802 6.9e-15 84.3 120 45.8
BcaC07g36852 Brassica carinata HOM05D003065 ORTHO05D003802 6.9e-15 84.3 120 41.7
C08p01860 Brassica napus HOM05D003065 ORTHO05D003802 6.9e-15 84.3 120 41.7
BolC8t46984H Brassica oleracea HOM05D003065 ORTHO05D003802 6.9e-15 84.3 120 41.7
FAN02G0663 Fragaria x ananassa HOM05D003065 ORTHO05D003802 6.9e-15 84.3 112 43.8
Sp4g14710 Schrenkiella parvula HOM05D003065 ORTHO05D003802 6.9e-15 84.3 123 43.9
FvH4_6g43520 Fragaria vesca HOM05D003065 ORTHO05D003802 9.1e-15 84.0 119 42.0
FAN09G0800 Fragaria x ananassa HOM05D003065 ORTHO05D003802 9.1e-15 84.0 115 43.5
Psat7g195560 Pisum sativum HOM05D003065 ORTHO05D003802 1.2e-14 83.6 119 44.5
THA.LOC104827382 Tarenaya hassleriana HOM05D003065 ORTHO05D003802 1.2e-14 83.6 77 59.7
Carub.0001s0456 Capsella rubella HOM05D003065 ORTHO05D003802 1.5e-14 83.2 135 41.5
Aa31LG5G4650 Aethionema arabicum HOM05D000219 ORTHO05D004649 2.0e-14 82.8 64 59.4
Ca_19100_v3 Cicer arietinum L. HOM05D003065 ORTHO05D003802 2.0e-14 82.8 110 45.5
Nn1g07002 Nelumbo nucifera HOM05D003065 ORTHO05D003802 2.0e-14 82.8 116 43.1
Manes.13G072700 Manihot esculenta HOM05D003065 ORTHO05D003802 2.6e-14 82.4 103 47.6
AT2G32340 Arabidopsis thaliana HOM05D003065 ORTHO05D003802 3.4e-14 82.0 55 69.1
Thhalv10002878m.g Eutrema salsugineum HOM05D003065 ORTHO05D003802 3.4e-14 82.0 119 42.0
A08p36480 Brassica napus HOM05D003065 ORTHO05D003802 4.5e-14 81.6 122 42.6
BraA08t35551Z Brassica rapa HOM05D003065 ORTHO05D003802 4.5e-14 81.6 122 42.6
Sc12g0002370 Simmondsia chinensis HOM05D003065 ORTHO05D003802 4.5e-14 81.6 121 42.1
BcaC07g42139 Brassica carinata HOM05D003065 ORTHO05D003802 5.9e-14 81.3 66 60.6
BolC8t52711H Brassica oleracea HOM05D003065 ORTHO05D003802 5.9e-14 81.3 66 60.6
Thhalv10007929m.g Eutrema salsugineum HOM05D003065 ORTHO05D003802 5.9e-14 81.3 68 57.4
Aqoxy4G02067 Aquilegia oxysepala HOM05D003065 ORTHO05D003802 1.0e-13 80.5 56 67.9
AUR62037143 Chenopodium quinoa HOM05D003065 ORTHO05D003802 1.0e-13 80.5 112 43.8
TPR.G19036 Trifolium pratense HOM05D003065 ORTHO05D003802 1.0e-13 80.5 51 74.5
HPP92_017620 Vanilla planifolia HOM05D003065 ORTHO05D003802 1.0e-13 80.5 113 41.6
Ca_19102_v3 Cicer arietinum L. HOM05D003065 ORTHO05D003802 1.3e-13 80.1 72 48.6
BcaB02g10475 Brassica carinata HOM05D003065 ORTHO05D003802 1.7e-13 79.7 52 61.5
VMungo1127G1692 Vigna mungo HOM05D003065 ORTHO05D003802 1.7e-13 79.7 64 56.2
BcaB05g23732 Brassica carinata HOM05D003065 ORTHO05D003802 2.2e-13 79.3 109 46.8
CDE05G1053 Ceratophyllum demersum HOM05D003065 ORTHO05D003802 2.2e-13 79.3 115 41.7
Thhalv10017883m.g Eutrema salsugineum HOM05D003065 ORTHO05D003802 2.2e-13 79.3 52 63.5
BcaC05g24399 Brassica carinata HOM05D003065 ORTHO05D003802 3.8e-13 78.6 126 39.7
C05p03480 Brassica napus HOM05D003065 ORTHO05D003802 3.8e-13 78.6 126 39.7
A03p18140 Brassica napus HOM05D003065 ORTHO05D003802 5.0e-13 78.2 118 40.7
BraA03t11073Z Brassica rapa HOM05D003065 ORTHO05D003802 5.0e-13 78.2 118 40.7
BraA09t42082Z Brassica rapa HOM05D003065 ORTHO05D003802 5.0e-13 78.2 51 66.7
PSO541G1708 Papaver somniferum HOM05D003065 ORTHO05D003802 5.0e-13 78.2 93 49.5
C04p17290 Brassica napus HOM05D003065 ORTHO05D003802 6.5e-13 77.8 52 59.6
BolC4t23281H Brassica oleracea HOM05D003065 ORTHO05D003802 6.5e-13 77.8 52 59.6
Lj3g0014705 Lotus japonicus HOM05D003065 ORTHO05D003802 6.5e-13 77.8 123 43.1
SalBow1G6109 Salvia bowleyana HOM05D003065 ORTHO05D003802 1.1e-12 77.0 66 63.6
BolC5t29129H Brassica oleracea HOM05D003065 ORTHO05D003802 1.9e-12 76.3 126 38.9
PSO675G8127 Papaver somniferum HOM05D003065 ORTHO05D003802 1.9e-12 76.3 130 39.2
Peaxi162Scf00012g00336 Petunia axillaris HOM05D003065 ORTHO05D003802 1.9e-12 76.3 80 53.8
Sabra07G0098500 Salix brachista HOM05D003065 ORTHO05D003802 1.9e-12 76.3 87 48.3
Nitab4.5_0000631g0050 Nicotiana tabacum HOM05D003065 ORTHO05D003802 2.5e-12 75.9 110 41.8
EL10Ac9g20661 Beta vulgaris HOM05D003065 ORTHO05D003802 4.2e-12 75.1 115 46.1
QL08p033752 Quercus lobata HOM05D003065 ORTHO05D003802 5.5e-12 74.7 147 37.4
Zm00001eb291870 Zea mays HOM05D003065 ORTHO05D003802 5.5e-12 74.7 61 59.0
BcaB01g03983 Brassica carinata HOM05D003065 ORTHO05D003802 7.2e-12 74.3 112 39.3
BcaC01g05909 Brassica carinata HOM05D003065 ORTHO05D003802 7.2e-12 74.3 112 39.3
C03p21170 Brassica napus HOM05D003065 ORTHO05D003802 7.2e-12 74.3 112 39.3
BolC3t14500H Brassica oleracea HOM05D003065 ORTHO05D003802 7.2e-12 74.3 112 39.3
Potri.007G121800 Populus trichocarpa HOM05D003065 ORTHO05D003802 9.4e-12 73.9 56 66.1
MBI02_g34314_MAGBIO Magnolia biondii HOM05D003065 ORTHO05D003802 1.2e-11 73.6 153 39.2
Sp1g04125 Schrenkiella parvula HOM05D003065 ORTHO05D003802 1.2e-11 73.6 69 52.2
AL125U10034 Arabidopsis lyrata HOM05D003065 ORTHO05D003802 1.6e-11 73.2 58 62.1
BcaC02g11329 Brassica carinata HOM05D003065 ORTHO05D003802 2.1e-11 72.8 104 39.4
BraA10t42653Z Brassica rapa HOM05D003065 ORTHO05D003802 2.1e-11 72.8 126 36.5
Os05g0499500 Oryza sativa ssp. japonica HOM05D003065 ORTHO05D003802 2.1e-11 72.8 98 44.9
VMungo1127G1794 Vigna mungo HOM05D003065 ORTHO05D003802 2.7e-11 72.4 63 50.8
A10p03780 Brassica napus HOM05D003065 ORTHO05D003802 3.6e-11 72.0 126 38.1
A05p13140 Brassica napus HOM05D003065 ORTHO05D003802 4.7e-11 71.6 105 41.0
BcaB05g22122 Brassica carinata HOM05D003065 ORTHO05D003802 6.1e-11 71.2 108 43.5
AUR62025067 Chenopodium quinoa HOM05D003065 ORTHO05D003802 1.0e-10 70.5 52 71.2
AL4G27732 Arabidopsis lyrata HOM05D003065 ORTHO05D003802 1.4e-10 70.1 55 61.8
BraA05t20252Z Brassica rapa HOM05D003065 ORTHO05D003802 1.4e-10 70.1 107 38.3
Medtr6g055230 Medicago truncatula HOM05D003065 ORTHO05D003802 2.3e-10 69.3 52 53.8
Cpa.g.sc8.233 Carica papaya HOM05D003065 ORTHO05D003802 3.0e-10 68.9 104 46.2
TPR.G19041 Trifolium pratense HOM05D003065 ORTHO05D003802 5.1e-10 68.2 51 56.9
BraA05t20780Z Brassica rapa HOM05D003065 ORTHO05D003802 1.1e-09 67.0 54 50.0
C05p51560 Brassica napus HOM05D003065 ORTHO05D003802 2.0e-09 66.2 54 50.0
SalBow1G0142 Salvia bowleyana HOM05D003065 ORTHO05D003802 2.0e-09 66.2 60 56.7
SalBow1G4454 Salvia bowleyana HOM05D003065 ORTHO05D003802 2.6e-09 65.9 70 50.0
Haze_12895 Corylus avellana HOM05D003065 ORTHO05D003802 3.3e-09 65.5 55 63.6
SalBow1G5722 Salvia bowleyana HOM05D003065 ORTHO05D003802 3.3e-09 65.5 56 58.9
MD17G1092800 Malus domestica HOM05D003065 ORTHO05D003802 7.4e-09 64.3 45 62.2
C08p51790 Brassica napus HOM05D000310 ORTHO05D003802 1.3e-08 63.5 131 35.1
BolC8t52712H Brassica oleracea HOM05D003065 ORTHO05D003802 1.3e-08 63.5 131 35.1
Pp3c16_8270 Physcomitrium patens HOM05D003065 ORTHO05D003802 1.3e-08 63.5 73 46.6
SalBow1G5165 Salvia bowleyana HOM05D003065 ORTHO05D003802 1.7e-08 63.2 56 57.1
BcaB03g16555 Brassica carinata HOM05D000068 ORTHO05D000084 8.2e-08 60.8 103 36.9
BcaB05g24467 Brassica carinata HOM05D003065 ORTHO05D020103 1.1e-07 60.5 109 37.6
SHI17596 Sapria himalayana HOM05D003065 ORTHO05D003802 1.4e-07 60.1 53 56.6
SalBow3G4408 Salvia bowleyana HOM05D003065 ORTHO05D003802 1.8e-07 59.7 56 55.4
SalBow1G0983 Salvia bowleyana HOM05D003065 ORTHO05D003802 2.4e-07 59.3 50 58.0
SalBow1G5817 Salvia bowleyana HOM05D003065 ORTHO05D003802 2.4e-07 59.3 91 40.7
Ca_27660_v3 Cicer arietinum L. HOM05D003065 ORTHO05D020103 3.1e-07 58.9 54 51.9
SalBow1G5448 Salvia bowleyana HOM05D003065 ORTHO05D003802 5.3e-07 58.2 50 56.0
Lj3g0026585 Lotus japonicus HOM05D003065 ORTHO05D003802 7.0e-07 57.8 57 50.9
Lj3g0025078 Lotus japonicus HOM05D003065 ORTHO05D003802 9.1e-07 57.4 35 68.6
SalBow3G2088 Salvia bowleyana HOM05D003065 ORTHO05D003802 9.1e-07 57.4 50 56.0
SalBow1G8297 Salvia bowleyana HOM05D003065 ORTHO05D003802 2.0e-06 56.2 72 47.2
Ah.01g014610 Amaranthus hybridus HOM05D003065 ORTHO05D003802 3.4e-06 55.5 103 37.9
BcaB01g03985 Brassica carinata HOM05D003266 ORTHO05D003718 7.7e-06 54.3 41 53.7
SEGI_18135 Sequoiadendron giganteum HOM05D003065 ORTHO05D386010 7.7e-06 54.3 48 58.3


User provided reference genes

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