Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu002901.1 Olea europaea HOM05D004986 ORTHO05D005898 4.8e-230 800.8 409 100.0
Dinv28304 Davidia involucrata HOM05D004986 ORTHO05D005898 1.3e-153 547.0 410 69.3
MSTRG.17107 Avicennia marina HOM05D004986 ORTHO05D005898 7.6e-151 537.7 409 67.7
Migut.B01487 Erythranthe guttata HOM05D004986 ORTHO05D005898 3.5e-148 528.9 410 66.8
CSS0007723 Camellia sinensis var. sinensis HOM05D004986 ORTHO05D005898 1.3e-147 526.9 410 65.6
Cc07_g12070 Coffea canephora HOM05D004986 ORTHO05D005898 2.3e-147 526.2 412 66.7
SalBow5G3763 Salvia bowleyana HOM05D004986 ORTHO05D005898 3.0e-147 525.8 408 66.7
Actinidia32993 Actinidia chinensis HOM05D004986 ORTHO05D005898 6.7e-147 524.6 410 66.8
Actinidia22885 Actinidia chinensis HOM05D004986 ORTHO05D005898 2.1e-145 519.6 409 66.7
Peaxi162Scf00920g00114 Petunia axillaris HOM05D004986 ORTHO05D005898 2.1e-145 519.6 410 65.1
Hma1.2p1_0085F.1_g044450 Hydrangea macrophylla HOM05D004986 ORTHO05D005898 9.0e-144 514.2 410 63.4
GSVIVG01022308001 Vitis vinifera HOM05D004986 ORTHO05D005898 3.8e-142 508.8 410 63.4
Atru.chr10.1816 Acer truncatum HOM05D004986 ORTHO05D005898 6.1e-140 501.5 405 64.0
Nitab4.5_0004269g0070 Nicotiana tabacum HOM05D004986 ORTHO05D005898 6.1e-140 501.5 410 63.9
Rhsim10G0191900 Rhododendron simsii HOM05D004986 ORTHO05D005898 1.0e-139 500.7 407 64.6
TAR628G0962 Trochodendron aralioides HOM05D004986 ORTHO05D005898 1.0e-139 500.7 410 63.9
Atru.chr10.1831 Acer truncatum HOM05D004986 ORTHO05D005898 1.5e-138 496.9 406 63.8
PGSC0003DMG400018667 Solanum tuberosum HOM05D004986 ORTHO05D005898 2.5e-138 496.1 407 63.6
CAN.G647.4 Capsicum annuum HOM05D004986 ORTHO05D005898 4.3e-138 495.4 407 63.9
DCAR_024399 Daucus carota HOM05D004986 ORTHO05D005898 1.6e-137 493.4 406 64.0
Nitab4.5_0000495g0010 Nicotiana tabacum HOM05D004986 ORTHO05D005898 1.6e-137 493.4 410 62.7
Sopen03g005900 Solanum pennellii HOM05D004986 ORTHO05D005898 4.8e-137 491.9 407 63.4
QL11p035166 Quercus lobata HOM05D004986 ORTHO05D005898 1.4e-136 490.3 400 64.2
Manes.02G115500 Manihot esculenta HOM05D004986 ORTHO05D005898 2.4e-136 489.6 414 62.6
Solyc03g032050.4 Solanum lycopersicum HOM05D004986 ORTHO05D005898 9.0e-136 487.6 407 63.4
Ciclev10025602m.g Citrus clementina HOM05D004986 ORTHO05D005898 2.2e-134 483.0 410 62.9
Cfa007104 Carpinus fangiana HOM05D004986 ORTHO05D005898 2.9e-134 482.6 405 63.2
Aqoxy6G01559 Aquilegia oxysepala HOM05D004986 ORTHO05D005898 2.1e-132 476.5 412 60.2
vmacro20612 Vaccinium macrocarpon HOM05D004986 ORTHO05D005898 1.8e-131 473.4 407 62.4
TAR381G0383 Trochodendron aralioides HOM05D004986 ORTHO05D005898 2.0e-130 469.9 402 59.7
TWI53G0851 Tripterygium wilfordii HOM05D004986 ORTHO05D005898 9.7e-130 467.6 409 61.6
Cpa.g.sc91.49 Carica papaya HOM05D004986 ORTHO05D005898 3.7e-129 465.7 406 59.9
Ca_02840_v3 Cicer arietinum L. HOM05D004986 ORTHO05D005898 4.8e-129 465.3 405 59.5
Medtr8g073110 Medicago truncatula HOM05D004986 ORTHO05D005898 4.8e-129 465.3 405 58.8
Prupe.7G185600 Prunus persica HOM05D004986 ORTHO05D005898 4.8e-129 465.3 413 60.8
Manes.01G157000 Manihot esculenta HOM05D004986 ORTHO05D005898 2.4e-128 463.0 409 58.2
HanXRQChr10g0316221 Helianthus annuus HOM05D004986 ORTHO05D005898 3.1e-128 462.6 406 61.3
CiPaw.07G000800 Carya illinoinensis HOM05D004986 ORTHO05D005898 4.1e-128 462.2 405 61.5
Lj3g0020964 Lotus japonicus HOM05D004986 ORTHO05D005898 2.0e-127 459.9 404 58.7
Nn5g31026 Nelumbo nucifera HOM05D004986 ORTHO05D005898 2.6e-127 459.5 466 53.9
Lj2C503G0 Lonicera japonica HOM05D004986 ORTHO05D005898 3.4e-127 459.1 391 64.7
PSO170G5246 Papaver somniferum HOM05D004986 ORTHO05D005898 5.9e-127 458.4 416 60.3
SGA_v2.0_scaffold34G13577 Striga asiatica HOM05D004986 ORTHO05D005898 1.3e-126 457.2 434 57.4
SGA_v2.0_scaffold52G19267 Striga asiatica HOM05D004986 ORTHO05D005898 3.8e-126 455.7 380 64.7
PGR119G1257 Punica granatum HOM05D004986 ORTHO05D005898 6.5e-126 454.9 400 59.0
FvH4_1g10130 Fragaria vesca HOM05D004986 ORTHO05D005898 1.9e-125 453.4 406 59.6
Lalb_Chr05g0214931 Lupinus albus HOM05D004986 ORTHO05D005898 1.9e-125 453.4 401 59.9
RcHm_v2.0_Chr2g0096901 Rosa chinensis HOM05D004986 ORTHO05D005898 1.9e-125 453.4 408 59.1
Thecc.01G002600 Theobroma cacao HOM05D004986 ORTHO05D005898 1.9e-125 453.4 403 59.6
FAN23G1121 Fragaria x ananassa HOM05D004986 ORTHO05D005898 2.5e-125 453.0 406 59.6
Psat4g105800 Pisum sativum HOM05D004986 ORTHO05D005898 1.2e-124 450.7 405 58.0
Haze_03636 Corylus avellana HOM05D004986 ORTHO05D005898 2.1e-124 449.9 447 57.3
FAN23G2177 Fragaria x ananassa HOM05D004986 ORTHO05D005898 2.1e-124 449.9 405 59.3
FAN19G1207 Fragaria x ananassa HOM05D004986 ORTHO05D005898 7.9e-124 448.0 406 59.1
MD15G1228500 Malus domestica HOM05D004986 ORTHO05D005898 1.4e-123 447.2 414 57.7
Phvul.010G020700 Phaseolus vulgaris HOM05D004986 ORTHO05D005898 1.4e-123 447.2 398 59.0
FAN26G2552 Fragaria x ananassa HOM05D004986 ORTHO05D005898 3.0e-123 446.0 405 58.0
FAN28G2129 Fragaria x ananassa HOM05D004986 ORTHO05D005898 3.0e-123 446.0 405 58.0
Glyma.16G112300 Glycine max HOM05D004986 ORTHO05D005898 3.0e-123 446.0 409 57.7
Carub.0008s2856 Capsella rubella HOM05D004986 ORTHO05D005898 5.1e-123 445.3 403 59.3
arahy.Tifrunner.gnm1.ann1.H550X0 Arachis hypogaea HOM05D004986 ORTHO05D005898 1.1e-122 444.1 402 58.7
CANSAT21G0416 Cannabis sativa HOM05D004986 ORTHO05D005898 2.6e-122 443.0 406 59.6
ECA240G4103 Erigeron canadensis HOM05D004986 ORTHO05D005898 1.3e-121 440.7 406 60.8
ClCG04G005010 Citrullus lanatus HOM05D004986 ORTHO05D005898 1.7e-121 440.3 399 58.6
Sed0027663 Sechium edule HOM05D004986 ORTHO05D005898 2.2e-121 439.9 401 59.1
VMungo0331G1669 Vigna mungo HOM05D004986 ORTHO05D005898 2.8e-121 439.5 398 57.3
Glyma.09G196600 Glycine max HOM05D004986 ORTHO05D005898 6.3e-121 438.3 399 58.4
AT5G65960 Arabidopsis thaliana HOM05D004986 ORTHO05D005898 8.2e-121 438.0 399 59.6
Hund21384 Selenicereus undatus HOM05D004986 ORTHO05D005898 1.4e-120 437.2 411 57.7
Lsat_1_v5_gn_2_73561 Lactuca sativa HOM05D004986 ORTHO05D005898 1.8e-120 436.8 417 57.1
CsaV3_4G027660 Cucumis sativus L. HOM05D004986 ORTHO05D005898 2.4e-120 436.4 401 57.9
AL8G45680 Arabidopsis lyrata HOM05D004986 ORTHO05D005898 7.0e-120 434.9 399 59.1
MELO3C026343.2 Cucumis melo HOM05D004986 ORTHO05D005898 7.0e-120 434.9 404 57.7
Eucgr.I02210 Eucalyptus grandis HOM05D004986 ORTHO05D005898 5.9e-119 431.8 402 57.0
unitig_26.g8860 Utricularia gibba HOM05D004986 ORTHO05D005898 5.0e-118 428.7 409 57.0
Sp2g30730 Schrenkiella parvula HOM05D004986 ORTHO05D005898 6.5e-118 428.3 402 58.5
Thhalv10004346m.g Eutrema salsugineum HOM05D004986 ORTHO05D005898 1.5e-117 427.2 407 57.2
Duzib106G1274 Durio zibethinus HOM05D004986 ORTHO05D005898 4.2e-117 425.6 403 56.6
Aa31LG1G14460 Aethionema arabicum HOM05D004986 ORTHO05D005898 5.5e-117 425.2 402 58.0
THA.LOC104826450 Tarenaya hassleriana HOM05D004986 ORTHO05D005898 8.0e-116 421.4 402 58.2
Gohir.D03G000700 Gossypium hirsutum HOM05D004986 ORTHO05D005898 1.4e-115 420.6 401 57.1
Gohir.A02G179000 Gossypium hirsutum HOM05D004986 ORTHO05D005898 2.0e-114 416.8 417 55.4
Gohir.A02G055800 Gossypium hirsutum HOM05D004986 ORTHO05D005898 9.7e-114 414.5 406 55.4
Gorai.005G068600 Gossypium raimondii HOM05D004986 ORTHO05D005898 2.8e-113 412.9 400 55.8
arahy.Tifrunner.gnm1.ann1.UZ6AL0 Arachis hypogaea HOM05D004986 ORTHO05D005898 8.2e-113 411.4 435 53.6
Gorai.003G001100 Gossypium raimondii HOM05D004986 ORTHO05D005898 1.1e-112 411.0 408 55.6
EL10Ac3g05234 Beta vulgaris HOM05D004986 ORTHO05D005898 5.3e-112 408.7 410 55.1
A09p10240 Brassica napus HOM05D004986 ORTHO05D005898 7.0e-112 408.3 402 57.7
Gohir.D02G061000 Gossypium hirsutum HOM05D004986 ORTHO05D005898 1.2e-111 407.5 400 55.2
Ah.10g026930 Amaranthus hybridus HOM05D004986 ORTHO05D005898 2.9e-110 402.9 409 55.5
Oeu037412.2 Olea europaea HOM05D004986 ORTHO05D005898 1.1e-109 401.0 413 59.1
CARHR257450 Cardamine hirsuta HOM05D004986 ORTHO05D005898 1.9e-109 400.2 405 56.5
Sabra02G0136200 Salix brachista HOM05D004986 ORTHO05D005898 1.8e-107 393.7 404 55.9
AUR62006055 Chenopodium quinoa HOM05D004986 ORTHO05D005898 3.4e-106 389.4 410 53.4
C09p12150 Brassica napus HOM05D004986 ORTHO05D005898 4.4e-106 389.0 395 55.4
Os04g0584800 Oryza sativa ssp. japonica HOM05D004986 ORTHO05D005898 7.5e-106 388.3 418 52.2
BolC9t54105H Brassica oleracea HOM05D004986 ORTHO05D005898 1.7e-105 387.1 395 55.9
BcaC04g23101 Brassica carinata HOM05D004986 ORTHO05D005898 6.3e-105 385.2 395 55.2
HPP92_007280 Vanilla planifolia HOM05D004986 ORTHO05D005898 1.1e-104 384.4 405 52.1
BraA09t36669Z Brassica rapa HOM05D004986 ORTHO05D005898 7.0e-104 381.7 406 55.4
Zm00001eb072790 Zea mays HOM05D004986 ORTHO05D005898 7.0e-104 381.7 424 50.2
Hma1.2p1_0085F.1_g044460 Hydrangea macrophylla HOM05D004986 ORTHO05D005898 4.5e-103 379.0 304 61.8
MBI13_g20494_MAGBIO Magnolia biondii HOM05D004986 ORTHO05D005898 2.7e-100 369.8 460 48.0
BcaB04g20132 Brassica carinata HOM05D004986 ORTHO05D005898 4.8e-97 359.0 420 50.5
Potri.002G177100 Populus trichocarpa HOM05D004986 ORTHO05D005898 9.5e-93 344.7 319 59.6
ATR0807G113 Amborella trichopoda HOM05D004986 ORTHO05D005898 6.1e-92 342.0 465 45.8
Psat0s3210g0040 Pisum sativum HOM05D004986 ORTHO05D005898 2.3e-91 340.1 272 61.4
CARHR281810 Cardamine hirsuta HOM05D004986 ORTHO05D005898 9.8e-90 334.7 266 64.3
Sc05g0009010 Simmondsia chinensis HOM05D004986 ORTHO05D005898 8.9e-83 311.6 363 49.6
COL.COLO4_34271 Corchorus olitorius HOM05D004986 ORTHO05D005898 1.5e-82 310.8 393 46.8
SEGI_13138 Sequoiadendron giganteum HOM05D004986 ORTHO05D005898 4.4e-82 309.3 396 44.4
Dinv40206 Davidia involucrata HOM05D004986 ORTHO05D005898 1.9e-80 303.9 252 64.7
Potri.007G064500 Populus trichocarpa HOM05D004986 ORTHO05D005898 7.8e-79 298.5 382 46.3
Atru.chr3.37 Acer truncatum HOM05D004986 ORTHO05D005898 1.1e-77 294.7 415 45.3
Mapoly0024s0125 Marchantia polymorpha HOM05D004986 ORTHO05D005898 3.3e-77 293.1 419 41.5
CDE04G0629 Ceratophyllum demersum HOM05D004986 ORTHO05D005898 1.6e-71 274.2 410 41.2
AagrBONN_evm.TU.Sc2ySwM_362.836 Anthoceros agrestis HOM05D004986 ORTHO05D005898 4.3e-69 266.2 471 37.2
Pp3c17_5460 Physcomitrium patens HOM05D004986 ORTHO05D005898 7.6e-66 255.4 433 38.6
Lj4g0017944 Lotus japonicus HOM05D004986 ORTHO05D005898 3.7e-65 253.1 396 40.4
SMO147G0325 Selaginella moellendorffii HOM05D004986 ORTHO05D005898 1.2e-63 248.1 406 39.9
HanXRQChr13g0388311 Helianthus annuus HOM05D004986 ORTHO05D005898 1.5e-61 241.1 231 58.9
CDE07G1230 Ceratophyllum demersum HOM05D004986 ORTHO05D005898 3.4e-58 229.9 257 46.3
MD02G1112100 Malus domestica HOM05D004986 ORTHO05D005898 1.7e-57 227.6 166 62.7
HanXRQChr13g0388301 Helianthus annuus HOM05D004986 ORTHO05D005898 4.9e-57 226.1 181 62.4
Sed0024004 Sechium edule HOM05D004986 ORTHO05D005898 1.6e-52 211.1 321 43.9
SGA_v2.0_scaffold578G53029 Striga asiatica HOM05D004986 ORTHO05D005898 4.4e-50 203.0 200 59.0
MD02G1113000 Malus domestica HOM05D004986 ORTHO05D005898 4.0e-43 179.9 155 58.1
AUR62035574 Chenopodium quinoa HOM05D004986 ORTHO05D005898 5.3e-43 179.5 174 52.3
MD02G1109300 Malus domestica HOM05D004986 ORTHO05D005898 1.3e-41 174.9 171 52.0
Atru.chr3.33 Acer truncatum HOM05D004986 ORTHO05D005898 3.2e-40 170.2 113 71.7
Atru.chr3.32 Acer truncatum HOM05D004986 ORTHO05D005898 3.2e-32 143.7 179 49.7
CBR_g24177 Chara braunii HOM05D004986 ORTHO05D005898 1.1e-29 135.2 260 35.4
TPR.G33051 Trifolium pratense HOM05D004986 ORTHO05D005898 4.5e-26 123.2 92 60.9
MD02G1113100 Malus domestica HOM05D004986 ORTHO05D005898 7.9e-23 112.5 185 40.5
MBI15_g18235_MAGBIO Magnolia biondii HOM05D004986 ORTHO05D005898 3.1e-19 100.5 115 52.2
MD02G1112600 Malus domestica HOM05D004986 ORTHO05D005898 3.4e-18 97.1 66 63.6
Zm00001eb338840 Zea mays HOM05D004986 ORTHO05D005898 3.6e-15 87.0 65 63.1
Zm00001eb355160 Zea mays HOM05D004986 ORTHO05D005898 3.6e-15 87.0 89 50.6
MD02G1112300 Malus domestica HOM05D004986 ORTHO05D005898 8.8e-14 82.4 83 50.6
arahy.Tifrunner.gnm1.ann1.06FJIN Arachis hypogaea HOM05D004986 ORTHO05D005898 1.3e-12 78.6 58 69.0
arahy.Tifrunner.gnm1.ann1.757MF4 Arachis hypogaea HOM05D004986 ORTHO05D005898 1.3e-12 78.6 58 69.0
MCO09G766 Micromonas commoda HOM05D004986 ORTHO05D005898 4.8e-12 76.6 256 25.8
CARHR281800 Cardamine hirsuta HOM05D004986 ORTHO05D005898 1.5e-10 71.6 53 67.9
arahy.Tifrunner.gnm1.ann1.864E1P Arachis hypogaea HOM05D004986 ORTHO05D005898 1.7e-09 68.2 62 59.7
arahy.Tifrunner.gnm1.ann1.GJAM3K Arachis hypogaea HOM05D004986 ORTHO05D005898 1.7e-09 68.2 62 59.7
CDE04G2304 Ceratophyllum demersum HOM05D004986 ORTHO05D005898 8.5e-09 65.9 188 33.0


User provided reference genes

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