Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu002885.1 Olea europaea HOM05D004886 ORTHO05D005868 3.1e-90 335.1 171 100.0
MSTRG.28124 Avicennia marina HOM05D004886 ORTHO05D005868 3.0e-77 292.0 171 84.2
Migut.N01703 Erythranthe guttata HOM05D004886 ORTHO05D005868 2.8e-75 285.4 172 83.1
Nitab4.5_0001476g0110 Nicotiana tabacum HOM05D004886 ORTHO05D005868 3.7e-75 285.0 175 82.3
Nitab4.5_0004264g0010 Nicotiana tabacum HOM05D004886 ORTHO05D005868 8.3e-75 283.9 175 81.7
Cc02_g25880 Coffea canephora HOM05D004886 ORTHO05D005868 7.0e-74 280.8 169 82.8
SalBow4G2359 Salvia bowleyana HOM05D004886 ORTHO05D005868 7.0e-74 280.8 167 83.8
Ciclev10022551m.g Citrus clementina HOM05D004886 ORTHO05D005868 4.5e-73 278.1 172 81.4
Glyma.03G100700 Glycine max HOM05D004886 ORTHO05D005868 4.5e-73 278.1 175 81.1
Atru.chr5.18 Acer truncatum HOM05D004886 ORTHO05D005868 5.9e-73 277.7 171 81.3
VMungo0331G0020 Vigna mungo HOM05D004886 ORTHO05D005868 7.8e-73 277.3 173 80.9
Aa31LG1G26120 Aethionema arabicum HOM05D004886 ORTHO05D005868 1.0e-72 276.9 171 77.2
Psat4g216480 Pisum sativum HOM05D004886 ORTHO05D005868 1.7e-72 276.2 174 80.5
Medtr8g009670 Medicago truncatula HOM05D004886 ORTHO05D005868 2.3e-72 275.8 178 81.5
Peaxi162Scf01124g00012 Petunia axillaris HOM05D004886 ORTHO05D005868 2.9e-72 275.4 168 81.0
Hund26556 Selenicereus undatus HOM05D004886 ORTHO05D005868 2.9e-72 275.4 173 78.0
Thhalv10006276m.g Eutrema salsugineum HOM05D004886 ORTHO05D005868 3.9e-72 275.0 171 78.4
Hma1.2p1_0021F.1_g014430 Hydrangea macrophylla HOM05D004886 ORTHO05D005868 3.9e-72 275.0 169 78.7
HanXRQChr05g0162431 Helianthus annuus HOM05D004886 ORTHO05D005868 1.1e-71 273.5 171 81.3
GSVIVG01018384001 Vitis vinifera HOM05D004886 ORTHO05D005868 1.1e-71 273.5 169 80.5
A04p01810 Brassica napus HOM05D004886 ORTHO05D005868 1.5e-71 273.1 171 77.8
BraA04t15905Z Brassica rapa HOM05D004886 ORTHO05D005868 1.5e-71 273.1 171 77.8
Phvul.010G040200 Phaseolus vulgaris HOM05D004886 ORTHO05D005868 1.5e-71 273.1 173 79.8
ECA246G0884 Erigeron canadensis HOM05D004886 ORTHO05D005868 2.5e-71 272.3 171 81.3
Lsat_1_v5_gn_6_101400 Lactuca sativa HOM05D004886 ORTHO05D005868 2.5e-71 272.3 171 80.7
Sopen01g035180 Solanum pennellii HOM05D004886 ORTHO05D005868 2.5e-71 272.3 173 78.6
TPR.G17348 Trifolium pratense HOM05D004886 ORTHO05D005868 2.5e-71 272.3 181 78.5
CiPaw.14G014400 Carya illinoinensis HOM05D004886 ORTHO05D005868 3.3e-71 271.9 172 79.1
AT2G44525 Arabidopsis thaliana HOM05D004886 ORTHO05D005868 4.3e-71 271.6 171 76.6
AL4G43550 Arabidopsis lyrata HOM05D004886 ORTHO05D005868 5.6e-71 271.2 171 76.6
Sp5g03060 Schrenkiella parvula HOM05D004886 ORTHO05D005868 7.3e-71 270.8 171 76.6
Solyc01g088350.4 Solanum lycopersicum HOM05D004886 ORTHO05D005868 7.3e-71 270.8 173 78.0
BcaB02g08189 Brassica carinata HOM05D004886 ORTHO05D005868 9.5e-71 270.4 169 77.5
CSS0044670 Camellia sinensis var. sinensis HOM05D004886 ORTHO05D005868 1.2e-70 270.0 179 78.2
MELO3C022467.2 Cucumis melo HOM05D004886 ORTHO05D005868 1.2e-70 270.0 175 78.9
TWI59G0909 Tripterygium wilfordii HOM05D004886 ORTHO05D005868 1.2e-70 270.0 173 78.6
CAN.G74.36 Capsicum annuum HOM05D004886 ORTHO05D005868 2.1e-70 269.2 172 76.7
THA.LOC104817165 Tarenaya hassleriana HOM05D004886 ORTHO05D005868 2.1e-70 269.2 171 76.6
Carub.0004s2709 Capsella rubella HOM05D004886 ORTHO05D005868 2.8e-70 268.9 171 75.4
CiPaw.13G020500 Carya illinoinensis HOM05D004886 ORTHO05D005868 3.6e-70 268.5 173 80.9
AT3G60150 Arabidopsis thaliana HOM05D004886 ORTHO05D005868 4.7e-70 268.1 171 76.6
BolC4t22182H Brassica oleracea HOM05D004886 ORTHO05D005868 4.7e-70 268.1 171 75.4
EL10Ac8g19580 Beta vulgaris HOM05D004886 ORTHO05D005868 6.1e-70 267.7 174 77.0
Thhalv10001659m.g Eutrema salsugineum HOM05D004886 ORTHO05D005868 6.1e-70 267.7 171 75.4
TWI14G0309 Tripterygium wilfordii HOM05D004886 ORTHO05D005868 6.1e-70 267.7 173 76.3
Carub.0005s2688 Capsella rubella HOM05D004886 ORTHO05D005868 8.0e-70 267.3 172 76.2
Sed0007303 Sechium edule HOM05D004886 ORTHO05D005868 8.0e-70 267.3 172 79.7
CARHR139740 Cardamine hirsuta HOM05D004886 ORTHO05D005868 1.0e-69 266.9 171 74.9
BcaC02g12300 Brassica carinata HOM05D004886 ORTHO05D005868 1.4e-69 266.5 171 74.9
C04p05420 Brassica napus HOM05D004886 ORTHO05D005868 1.4e-69 266.5 171 74.9
Sp4g26620 Schrenkiella parvula HOM05D004886 ORTHO05D005868 1.8e-69 266.2 171 74.9
BcaB02g08829 Brassica carinata HOM05D004886 ORTHO05D005868 2.3e-69 265.8 171 74.3
Gorai.012G082000 Gossypium raimondii HOM05D004886 ORTHO05D005868 2.3e-69 265.8 174 77.0
Lalb_Chr07g0194931 Lupinus albus HOM05D004886 ORTHO05D005868 3.1e-69 265.4 175 74.9
Nn1g07674 Nelumbo nucifera HOM05D004886 ORTHO05D005868 3.1e-69 265.4 170 77.1
Duzib128G0726 Durio zibethinus HOM05D004886 ORTHO05D005868 4.0e-69 265.0 174 78.2
vmacro13553 Vaccinium macrocarpon HOM05D004886 ORTHO05D005868 4.0e-69 265.0 173 78.6
Gohir.A05G333500 Gossypium hirsutum HOM05D004886 ORTHO05D005868 6.8e-69 264.2 174 75.9
BraA05t19444Z Brassica rapa HOM05D004886 ORTHO05D005868 8.9e-69 263.8 171 73.7
unitig_85.g27219 Utricularia gibba HOM05D004886 ORTHO05D005868 1.2e-68 263.5 172 75.6
A05p04680 Brassica napus HOM05D004886 ORTHO05D005868 1.5e-68 263.1 171 73.1
Gohir.D04G073000 Gossypium hirsutum HOM05D004886 ORTHO05D005868 1.5e-68 263.1 174 76.4
COL.COLO4_20817 Corchorus olitorius HOM05D004886 ORTHO05D005868 2.0e-68 262.7 175 77.1
Rhsim07G0040800 Rhododendron simsii HOM05D004886 ORTHO05D005868 2.0e-68 262.7 173 77.5
Rhsim07G0041300 Rhododendron simsii HOM05D004886 ORTHO05D005868 2.0e-68 262.7 173 77.5
RhsimUnG0113600 Rhododendron simsii HOM05D004886 ORTHO05D005868 2.0e-68 262.7 173 77.5
Actinidia05803 Actinidia chinensis HOM05D004886 ORTHO05D005868 2.6e-68 262.3 172 77.9
QL04p024857 Quercus lobata HOM05D004886 ORTHO05D005868 2.6e-68 262.3 174 75.9
Prupe.3G009000 Prunus persica HOM05D004886 ORTHO05D005868 3.4e-68 261.9 169 76.9
MD07G1082600 Malus domestica HOM05D004886 ORTHO05D005868 4.4e-68 261.5 173 74.0
Manes.05G060800 Manihot esculenta HOM05D004886 ORTHO05D005868 5.8e-68 261.2 169 76.3
BcaC02g10116 Brassica carinata HOM05D004886 ORTHO05D005868 1.3e-67 260.0 164 76.8
C04p32550 Brassica napus HOM05D004886 ORTHO05D005868 1.3e-67 260.0 164 76.8
BolC4t24818H Brassica oleracea HOM05D004886 ORTHO05D005868 1.3e-67 260.0 164 76.8
AUR62034033 Chenopodium quinoa HOM05D004886 ORTHO05D005868 2.2e-67 259.2 175 74.9
Potri.014G179500 Populus trichocarpa HOM05D004886 ORTHO05D005868 2.2e-67 259.2 170 77.6
Lj3g0025670 Lotus japonicus HOM05D004886 ORTHO05D005868 2.9e-67 258.8 173 76.3
CsaV3_6G004620 Cucumis sativus L. HOM05D004886 ORTHO05D005868 3.7e-67 258.5 204 69.1
arahy.Tifrunner.gnm1.ann1.FT2T1Y Arachis hypogaea HOM05D004886 ORTHO05D005868 4.9e-67 258.1 174 74.1
CANSAT21G0345 Cannabis sativa HOM05D004886 ORTHO05D005868 1.1e-66 256.9 181 74.0
CsaV3_6G021750 Cucumis sativus L. HOM05D004886 ORTHO05D005868 1.1e-66 256.9 204 68.6
CsaV3_6G037000 Cucumis sativus L. HOM05D004886 ORTHO05D005868 1.1e-66 256.9 204 68.6
Eucgr.D01136 Eucalyptus grandis HOM05D004886 ORTHO05D005868 1.1e-66 256.9 178 73.6
Prupe.2G110500 Prunus persica HOM05D004886 ORTHO05D005868 1.1e-66 256.9 165 77.0
FAN28G1372 Fragaria x ananassa HOM05D004886 ORTHO05D005868 1.4e-66 256.5 160 78.8
RcHm_v2.0_Chr3g0487321 Rosa chinensis HOM05D004886 ORTHO05D005868 1.9e-66 256.1 159 79.2
FAN23G1419 Fragaria x ananassa HOM05D004886 ORTHO05D005868 2.4e-66 255.8 160 78.1
Thecc.10G000600 Theobroma cacao HOM05D004886 ORTHO05D005868 2.4e-66 255.8 196 69.4
Aqoxy3G02476 Aquilegia oxysepala HOM05D004886 ORTHO05D005868 3.2e-66 255.4 173 72.8
FvH4_1g27010 Fragaria vesca HOM05D004886 ORTHO05D005868 3.2e-66 255.4 160 78.1
PGR044G2350 Punica granatum HOM05D004886 ORTHO05D005868 4.1e-66 255.0 173 76.9
FAN26G2919 Fragaria x ananassa HOM05D004886 ORTHO05D005868 1.2e-65 253.4 160 77.5
arahy.Tifrunner.gnm1.ann1.U68WY7 Arachis hypogaea HOM05D004886 ORTHO05D005868 1.6e-65 253.1 174 73.6
TAR375G0952 Trochodendron aralioides HOM05D004886 ORTHO05D005868 1.6e-65 253.1 157 77.7
DCAR_015764 Daucus carota HOM05D004886 ORTHO05D005868 4.6e-65 251.5 208 64.9
Cfa011001 Carpinus fangiana HOM05D002067 ORTHO05D001060 7.8e-65 250.8 160 77.5
MD09G1285000 Malus domestica HOM05D004886 ORTHO05D005868 1.0e-64 250.4 181 71.3
MBI04_g13864_MAGBIO Magnolia biondii HOM05D004886 ORTHO05D005868 1.1e-63 246.9 168 72.0
SGA_v2.0_scaffold77G25231 Striga asiatica HOM05D000012 ORTHO05D001060 1.1e-63 246.9 225 58.7
FAN19G1058 Fragaria x ananassa HOM05D004886 ORTHO05D005868 4.3e-63 245.0 160 76.9
Zm00001eb024270 Zea mays HOM05D004886 ORTHO05D005868 4.3e-63 245.0 166 72.3
HPP92_003510 Vanilla planifolia HOM05D004886 ORTHO05D005868 2.8e-62 242.3 168 69.6
Zm00001eb390620 Zea mays HOM05D004886 ORTHO05D005868 6.2e-62 241.1 167 70.7
PSO782G3769 Papaver somniferum HOM05D004886 ORTHO05D005868 8.0e-62 240.7 173 68.2
PSO063G1771 Papaver somniferum HOM05D004886 ORTHO05D005868 5.2e-61 238.0 173 67.6
vmacro21096 Vaccinium macrocarpon HOM05D004886 ORTHO05D005868 3.4e-60 235.3 219 61.2
Haze_02935 Corylus avellana HOM05D004886 ORTHO05D005868 3.7e-59 231.9 176 68.8
CsaV3_6G006530 Cucumis sativus L. HOM05D004886 ORTHO05D005868 2.1e-57 226.1 139 79.9
CsaV3_UNG176370 Cucumis sativus L. HOM05D004886 ORTHO05D005868 4.6e-57 224.9 213 61.0
Dinv44001 Davidia involucrata HOM05D004886 ORTHO05D005868 4.6e-57 224.9 142 76.8
CDE11G0764 Ceratophyllum demersum HOM05D004886 ORTHO05D005868 1.5e-55 219.9 171 62.6
Sed0018381 Sechium edule HOM05D004886 ORTHO05D005868 4.3e-55 218.4 189 65.6
Ah.09g232340 Amaranthus hybridus HOM05D004886 ORTHO05D005868 2.1e-54 216.1 175 66.9
Sabra14G0137800 Salix brachista HOM05D004886 ORTHO05D005868 1.1e-53 213.8 263 48.3
Lj9C547T8 Lonicera japonica HOM05D004886 ORTHO05D005868 1.8e-53 213.0 187 64.2
Actinidia30969 Actinidia chinensis HOM05D004886 ORTHO05D005868 5.1e-48 194.9 120 78.3
CAN.G1480.6 Capsicum annuum HOM05D004886 ORTHO05D005868 1.9e-47 193.0 113 80.5
ClCG06G000740 Citrullus lanatus HOM05D004886 ORTHO05D005868 2.4e-45 186.0 175 61.1
HPP92_003514 Vanilla planifolia HOM05D004886 ORTHO05D005868 4.0e-45 185.3 168 56.5
Cpa.g.sc587.3 Carica papaya HOM05D004886 ORTHO05D005868 3.0e-40 169.1 107 77.6
SGA_v2.0_scaffold95G28731 Striga asiatica HOM05D004886 ORTHO05D005868 3.9e-40 168.7 116 70.7
SHI13674 Sapria himalayana HOM05D004886 ORTHO05D005868 7.3e-39 164.5 113 67.3
Nn1g07677 Nelumbo nucifera HOM05D004886 ORTHO05D005868 1.6e-38 163.3 107 74.8
Pp3c12_4990 Physcomitrium patens HOM05D004886 ORTHO05D005868 5.8e-36 154.8 148 47.3
Aa31LG10G14300 Aethionema arabicum HOM05D004886 ORTHO05D005868 9.9e-36 154.1 116 69.0
Dinv43568 Davidia involucrata HOM05D004886 ORTHO05D005868 1.3e-35 153.7 96 77.1
Mapoly0033s0133 Marchantia polymorpha HOM05D004886 ORTHO05D005868 6.4e-35 151.4 155 47.1
Sc23g0004110 Simmondsia chinensis HOM05D004886 ORTHO05D005868 8.4e-35 151.0 120 66.7
Sabra14G0139700 Salix brachista HOM05D004886 ORTHO05D005868 3.5e-33 145.6 109 66.1
Os10g0571100 Oryza sativa ssp. japonica HOM05D004886 ORTHO05D005868 3.0e-32 142.5 106 67.0
AUR62038597 Chenopodium quinoa HOM05D004886 ORTHO05D005868 4.3e-31 138.7 101 72.3
MD04G1140000 Malus domestica HOM05D004886 ORTHO05D005868 6.9e-29 131.3 103 67.0
BraA05t19447Z Brassica rapa HOM05D004886 ORTHO05D005868 7.6e-28 127.9 81 72.8
BraA05t19448Z Brassica rapa HOM05D004886 ORTHO05D005868 7.6e-28 127.9 81 72.8
CARHR170460 Cardamine hirsuta HOM05D004886 ORTHO05D005868 1.3e-24 117.1 82 73.2
AagrBONN_evm.TU.Sc2ySwM_344.1568 Anthoceros agrestis HOM05D004886 ORTHO05D005868 3.3e-23 112.5 112 42.9
Sabra14G0139800 Salix brachista HOM05D004886 ORTHO05D005868 3.3e-23 112.5 63 85.7
CsaV3_5G024660 Cucumis sativus L. HOM05D004886 ORTHO05D005868 5.6e-23 111.7 122 53.3
Os03g0590700 Oryza sativa ssp. japonica HOM05D004886 ORTHO05D005868 1.3e-22 110.5 64 85.9
Cpa.g.c35192.2 Carica papaya HOM05D004886 ORTHO05D005868 1.8e-21 106.7 95 61.1
CsaV3_3G022410 Cucumis sativus L. HOM05D004886 ORTHO05D005868 5.3e-21 105.1 122 50.8
A05p04700 Brassica napus HOM05D004886 ORTHO05D005868 9.0e-21 104.4 65 73.8
Cre12.g496800 Chlamydomonas reinhardtii HOM05D004886 ORTHO05D005868 1.0e-19 100.9 102 42.2
SMO364G0857 Selaginella moellendorffii HOM05D004886 ORTHO05D005868 1.0e-19 100.9 104 45.2
ATR0049G020 Amborella trichopoda HOM05D004886 ORTHO05D005868 1.4e-18 97.1 62 74.2
SEGI_24442 Sequoiadendron giganteum HOM05D004886 ORTHO05D005868 1.6e-17 93.6 82 53.7
MCO06G183 Micromonas commoda HOM05D004886 ORTHO05D005868 5.7e-15 85.1 106 36.8
Cc04_g01570 Coffea canephora HOM05D004886 ORTHO05D005868 1.6e-14 83.6 50 78.0
FAN10G0867 Fragaria x ananassa HOM05D004886 ORTHO05D005868 1.4e-13 80.5 104 47.1
PRCOL_00001209 Prasinoderma coloniale HOM05D004886 ORTHO05D005868 6.9e-13 78.2 136 34.6
SalBow2G0716 Salvia bowleyana HOM05D000282 ORTHO05D000272 1.3e-06 57.4 32 84.4


User provided reference genes

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