Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu002429.1 Olea europaea HOM05D004998 ORTHO05D006104 1.5e-29 132.1 64 100.0
DCAR_005961 Daucus carota HOM05D004998 ORTHO05D006104 6.4e-12 73.6 59 66.1
Dinv17028 Davidia involucrata HOM05D004998 ORTHO05D006104 6.4e-12 73.6 64 62.5
Dinv42976 Davidia involucrata HOM05D004998 ORTHO05D006104 6.4e-12 73.6 64 62.5
Dinv43123 Davidia involucrata HOM05D004998 ORTHO05D006104 6.4e-12 73.6 64 62.5
Glyma.15G036800 Glycine max HOM05D004998 ORTHO05D006104 3.2e-11 71.2 62 61.3
Dinv06259 Davidia involucrata HOM05D004998 ORTHO05D006104 4.1e-11 70.9 69 56.5
Oeu053883.1 Olea europaea HOM05D004998 ORTHO05D006104 5.4e-11 70.5 52 71.2
QL01p031100 Quercus lobata HOM05D004998 ORTHO05D006104 7.0e-11 70.1 55 65.5
CSS0032367 Camellia sinensis var. sinensis HOM05D004998 ORTHO05D006104 9.2e-11 69.7 54 70.4
CSS0033668 Camellia sinensis var. sinensis HOM05D004998 ORTHO05D006104 9.2e-11 69.7 59 66.1
Migut.D02075 Erythranthe guttata HOM05D004998 ORTHO05D006104 9.2e-11 69.7 59 61.0
Peaxi162Scf00122g01415 Petunia axillaris HOM05D004998 ORTHO05D006104 9.2e-11 69.7 60 58.3
Actinidia34418 Actinidia chinensis HOM05D004998 ORTHO05D006104 1.2e-10 69.3 64 59.4
Phvul.L006843 Phaseolus vulgaris HOM05D004998 ORTHO05D006104 1.2e-10 69.3 59 59.3
TWI75G0636 Tripterygium wilfordii HOM05D004998 ORTHO05D006104 1.6e-10 68.9 58 65.5
Actinidia23927 Actinidia chinensis HOM05D004998 ORTHO05D006104 2.0e-10 68.6 64 57.8
Hma1.2p1_0615F.1_g189810 Hydrangea macrophylla HOM05D004998 ORTHO05D006104 2.7e-10 68.2 59 62.7
Rhsim13G0078800 Rhododendron simsii HOM05D004998 ORTHO05D006104 3.5e-10 67.8 64 59.4
SalBow3G1756 Salvia bowleyana HOM05D004998 ORTHO05D006104 3.5e-10 67.8 53 64.2
VMungo1080G1028 Vigna mungo HOM05D004998 ORTHO05D006104 3.5e-10 67.8 59 59.3
Medtr2g097480 Medicago truncatula HOM05D004998 ORTHO05D006104 4.6e-10 67.4 59 59.3
arahy.Tifrunner.gnm1.ann1.AD2TJP Arachis hypogaea HOM05D004998 ORTHO05D006104 7.8e-10 66.6 61 59.0
arahy.Tifrunner.gnm1.ann1.JSTV8M Arachis hypogaea HOM05D004998 ORTHO05D006104 7.8e-10 66.6 61 59.0
Eucgr.B02327 Eucalyptus grandis HOM05D004998 ORTHO05D006104 7.8e-10 66.6 59 59.3
Glyma.13G337700 Glycine max HOM05D004998 ORTHO05D006104 7.8e-10 66.6 59 59.3
Medtr4g064210 Medicago truncatula HOM05D004998 ORTHO05D006104 1.0e-09 66.2 59 54.2
Ciclev10029345m.g Citrus clementina HOM05D004998 ORTHO05D006104 1.7e-09 65.5 59 61.0
MELO3C025903.2 Cucumis melo HOM05D004998 ORTHO05D006104 1.7e-09 65.5 59 61.0
ATR0559G067 Amborella trichopoda HOM05D004998 ORTHO05D006104 2.3e-09 65.1 59 57.6
CsaV3_6G016720 Cucumis sativus L. HOM05D004998 ORTHO05D006104 2.3e-09 65.1 59 61.0
TPR.G5593 Trifolium pratense HOM05D004998 ORTHO05D006104 3.0e-09 64.7 59 57.6
Cfa011521 Carpinus fangiana HOM05D004998 ORTHO05D006104 3.9e-09 64.3 55 61.8
Lj1A149T62 Lonicera japonica HOM05D004998 ORTHO05D006104 3.9e-09 64.3 53 66.0
CANSAT54G1321 Cannabis sativa HOM05D004998 ORTHO05D006104 5.0e-09 63.9 59 59.3
CiPaw.14G067400 Carya illinoinensis HOM05D004998 ORTHO05D006104 5.0e-09 63.9 60 58.3
Lj3g0014072 Lotus japonicus HOM05D004998 ORTHO05D006104 5.0e-09 63.9 62 54.8
SGA_v2.0_scaffold41G15739 Striga asiatica HOM05D004998 ORTHO05D006104 5.0e-09 63.9 55 61.8
vmacro03047 Vaccinium macrocarpon HOM05D004998 ORTHO05D006104 5.0e-09 63.9 64 57.8
Gohir.D05G094800 Gossypium hirsutum HOM05D004998 ORTHO05D006104 6.6e-09 63.5 65 58.5
TWI79G0863 Tripterygium wilfordii HOM05D004998 ORTHO05D006104 6.6e-09 63.5 59 55.9
Cc01_g13080 Coffea canephora HOM05D004998 ORTHO05D006104 8.6e-09 63.2 55 60.0
MD11G1097800 Malus domestica HOM05D004998 ORTHO05D006104 1.1e-08 62.8 59 61.0
Nn2g11147 Nelumbo nucifera HOM05D004998 ORTHO05D006104 1.1e-08 62.8 54 61.1
ClCG02G020020 Citrullus lanatus HOM05D004998 ORTHO05D006104 1.5e-08 62.4 59 59.3
Haze_24126 Corylus avellana HOM05D004998 ORTHO05D006104 1.5e-08 62.4 53 64.2
FvH4_3g36750 Fragaria vesca HOM05D004998 ORTHO05D006104 1.5e-08 62.4 55 58.2
EL10Ac7g16043 Beta vulgaris HOM05D004998 ORTHO05D006104 1.9e-08 62.0 62 56.5
Gohir.A05G094300 Gossypium hirsutum HOM05D004998 ORTHO05D006104 1.9e-08 62.0 65 58.5
Gorai.009G098000 Gossypium raimondii HOM05D004998 ORTHO05D006104 3.3e-08 61.2 63 55.6
Sabra09G0023800 Salix brachista HOM05D004998 ORTHO05D006104 3.3e-08 61.2 60 55.0
SEGI_30466 Sequoiadendron giganteum HOM05D004998 ORTHO05D006104 3.3e-08 61.2 36 75.0
Thecc.09G318900 Theobroma cacao HOM05D004998 ORTHO05D006104 3.3e-08 61.2 56 64.3
FAN21G1380 Fragaria x ananassa HOM05D004998 ORTHO05D006104 4.3e-08 60.8 53 56.6
Gohir.D03G123600 Gossypium hirsutum HOM05D004998 ORTHO05D006104 4.3e-08 60.8 60 60.0
HanXRQChr12g0374241 Helianthus annuus HOM05D004998 ORTHO05D006104 4.3e-08 60.8 59 57.6
Psat5g285160 Pisum sativum HOM05D004998 ORTHO05D006104 4.3e-08 60.8 56 55.4
Hund18896 Selenicereus undatus HOM05D004998 ORTHO05D006104 4.3e-08 60.8 54 61.1
TAR636G1117 Trochodendron aralioides HOM05D004998 ORTHO05D006104 4.3e-08 60.8 59 57.6
FAN11G2014 Fragaria x ananassa HOM05D004998 ORTHO05D006104 5.6e-08 60.5 55 56.4
Gohir.A03G043800 Gossypium hirsutum HOM05D004998 ORTHO05D006104 7.3e-08 60.1 35 82.9
Lalb_Chr03g0026531 Lupinus albus HOM05D004998 ORTHO05D006104 7.3e-08 60.1 59 59.3
MBI14_g12121_MAGBIO Magnolia biondii HOM05D004998 ORTHO05D006104 7.3e-08 60.1 52 61.5
Manes.01G171600 Manihot esculenta HOM05D004998 ORTHO05D006104 7.3e-08 60.1 54 59.3
FAN16G3214 Fragaria x ananassa HOM05D004998 ORTHO05D006104 9.5e-08 59.7 52 57.7
RcHm_v2.0_Chr5g0065711 Rosa chinensis HOM05D004998 ORTHO05D006104 9.5e-08 59.7 55 56.4
GSVIVG01024930001 Vitis vinifera HOM05D004998 ORTHO05D006104 9.5e-08 59.7 52 63.5
TAR633G0520 Trochodendron aralioides HOM05D004998 ORTHO05D006104 1.2e-07 59.3 54 55.6
Peaxi162Scf00092g01117 Petunia axillaris HOM05D004998 ORTHO05D006104 1.6e-07 58.9 58 55.2
Aqoxy1G00915 Aquilegia oxysepala HOM05D004998 ORTHO05D006104 2.1e-07 58.5 64 57.8
HanXRQChr07g0197281 Helianthus annuus HOM05D004998 ORTHO05D006104 2.1e-07 58.5 59 55.9
MD03G1088800 Malus domestica HOM05D004998 ORTHO05D006104 2.1e-07 58.5 59 55.9
THA.LOC104810769 Tarenaya hassleriana HOM05D004998 ORTHO05D006104 2.1e-07 58.5 57 56.1
Ah.08g219770 Amaranthus hybridus HOM05D004998 ORTHO05D006104 2.8e-07 58.2 58 55.2
CDE02G2808 Ceratophyllum demersum HOM05D004998 ORTHO05D006104 2.8e-07 58.2 56 57.1
Nitab4.5_0000272g0050 Nicotiana tabacum HOM05D004998 ORTHO05D006104 2.8e-07 58.2 62 53.2
Atru.chr3.3979 Acer truncatum HOM05D004998 ORTHO05D006104 3.6e-07 57.8 54 63.0
MSTRG.18567 Avicennia marina HOM05D004998 ORTHO05D006104 3.6e-07 57.8 60 51.7
Duzib150G0269 Durio zibethinus HOM05D004998 ORTHO05D006104 3.6e-07 57.8 45 68.9
ECA247G2861 Erigeron canadensis HOM05D004998 ORTHO05D006104 3.6e-07 57.8 59 55.9
Os01g0144600 Oryza sativa ssp. japonica HOM05D004998 ORTHO05D006104 3.6e-07 57.8 59 50.8
Potri.009G033400 Populus trichocarpa HOM05D004998 ORTHO05D006104 3.6e-07 57.8 56 58.9
unitig_37.g12674 Utricularia gibba HOM05D004998 ORTHO05D006104 3.6e-07 57.8 56 58.9
Nn2g13381 Nelumbo nucifera HOM05D004998 ORTHO05D006104 4.7e-07 57.4 56 58.9
Sc12g0001370 Simmondsia chinensis HOM05D004998 ORTHO05D006104 4.7e-07 57.4 48 64.6
AUR62001761 Chenopodium quinoa HOM05D004998 ORTHO05D006104 6.2e-07 57.0 49 59.2
AUR62009547 Chenopodium quinoa HOM05D004998 ORTHO05D006104 6.2e-07 57.0 49 59.2
Lsat_1_v5_gn_9_23841 Lactuca sativa HOM05D004998 ORTHO05D006104 6.2e-07 57.0 52 59.6
Prupe.6G073200 Prunus persica HOM05D004998 ORTHO05D006104 6.2e-07 57.0 59 61.0
HPP92_006623 Vanilla planifolia HOM05D004998 ORTHO05D006104 6.2e-07 57.0 32 81.2
CiPaw.13G091800 Carya illinoinensis HOM05D004998 ORTHO05D006104 8.1e-07 56.6 55 54.5
CDE08G1537 Ceratophyllum demersum HOM05D004998 ORTHO05D006104 1.1e-06 56.2 56 55.4
Duzib168G2185 Durio zibethinus HOM05D004998 ORTHO05D006104 1.1e-06 56.2 35 77.1
Gorai.003G130300 Gossypium raimondii HOM05D004998 ORTHO05D006104 1.1e-06 56.2 60 56.7
COL.COLO4_18543 Corchorus olitorius HOM05D004998 ORTHO05D006104 1.8e-06 55.5 42 66.7
Nitab4.5_0007132g0030 Nicotiana tabacum HOM05D004998 ORTHO05D006104 2.3e-06 55.1 54 53.7
PSO339G2709 Papaver somniferum HOM05D004998 ORTHO05D006104 2.3e-06 55.1 51 58.8
PGR102G0830 Punica granatum HOM05D004998 ORTHO05D006104 2.3e-06 55.1 52 55.8
PGSC0003DMG400002149 Solanum tuberosum HOM05D004998 ORTHO05D006104 2.3e-06 55.1 54 53.7
BcaC03g14012 Brassica carinata HOM05D004998 ORTHO05D006104 3.1e-06 54.7 57 54.4
C02p12480 Brassica napus HOM05D004998 ORTHO05D006104 3.1e-06 54.7 57 54.4
BolC2t07348H Brassica oleracea HOM05D004998 ORTHO05D006104 3.1e-06 54.7 57 54.4
BraA02t05793Z Brassica rapa HOM05D004998 ORTHO05D006104 3.1e-06 54.7 57 54.4
A02p07120 Brassica napus HOM05D004998 ORTHO05D006104 4.0e-06 54.3 57 54.4
Solyc06g005600.3 Solanum lycopersicum HOM05D004998 ORTHO05D006104 4.0e-06 54.3 35 68.6
Sopen06g001560 Solanum pennellii HOM05D004998 ORTHO05D006104 4.0e-06 54.3 35 68.6
Aa31LG4G15620 Aethionema arabicum HOM05D004998 ORTHO05D006104 5.2e-06 53.9 57 52.6
Sp6g21150 Schrenkiella parvula HOM05D004998 ORTHO05D006104 5.2e-06 53.9 57 54.4
AL8G35930 Arabidopsis lyrata HOM05D004998 ORTHO05D006104 6.8e-06 53.5 57 52.6
Sed0008555 Sechium edule HOM05D004998 ORTHO05D006104 6.8e-06 53.5 55 56.4


User provided reference genes

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