Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu002212.1 Olea europaea HOM05D004817 ORTHO05D005790 4.5e-35 150.6 71 100.0
Oeu022716.1 Olea europaea HOM05D004817 ORTHO05D005790 2.3e-26 121.7 72 84.7
Dinv24730 Davidia involucrata HOM05D004817 ORTHO05D005790 2.2e-21 105.1 64 84.4
Manes.03G213500 Manihot esculenta HOM05D004817 ORTHO05D005790 6.4e-21 103.6 67 79.1
Potri.010G004000 Populus trichocarpa HOM05D004817 ORTHO05D005790 6.4e-21 103.6 67 79.1
SalBow6G6449 Salvia bowleyana HOM05D004817 ORTHO05D005790 1.4e-20 102.4 65 80.0
Gohir.A01G036400 Gossypium hirsutum HOM05D004817 ORTHO05D005790 7.0e-20 100.1 65 80.0
Gohir.D01G023700 Gossypium hirsutum HOM05D004817 ORTHO05D005790 7.0e-20 100.1 65 80.0
Gorai.002G032200 Gossypium raimondii HOM05D004817 ORTHO05D005790 7.0e-20 100.1 65 80.0
Eucgr.B02200 Eucalyptus grandis HOM05D004817 ORTHO05D005790 9.2e-20 99.8 64 78.1
COL.COLO4_25048 Corchorus olitorius HOM05D004817 ORTHO05D005790 1.2e-19 99.4 64 79.7
Sabra10G0003400 Salix brachista HOM05D004817 ORTHO05D005790 1.6e-19 99.0 68 75.0
PGR031G2777 Punica granatum HOM05D004817 ORTHO05D005790 2.7e-19 98.2 68 76.5
QL06p014718 Quercus lobata HOM05D004817 ORTHO05D005790 4.6e-19 97.4 66 74.2
Duzib151G1168 Durio zibethinus HOM05D004817 ORTHO05D005790 1.0e-18 96.3 66 74.2
Phvul.003G124400 Phaseolus vulgaris HOM05D004817 ORTHO05D005790 1.0e-18 96.3 68 73.5
Prupe.1G208000 Prunus persica HOM05D004817 ORTHO05D005790 2.3e-18 95.1 66 78.8
Glyma.13G117300 Glycine max HOM05D004817 ORTHO05D005790 3.0e-18 94.7 70 72.9
GSVIVG01017708001 Vitis vinifera HOM05D004817 ORTHO05D005790 3.0e-18 94.7 66 75.8
TAR362G1300 Trochodendron aralioides HOM05D004817 ORTHO05D005790 3.9e-18 94.4 66 75.8
Phvul.009G221600 Phaseolus vulgaris HOM05D004817 ORTHO05D005790 5.1e-18 94.0 66 72.7
TPR.G29237 Trifolium pratense HOM05D004817 ORTHO05D005790 5.1e-18 94.0 66 74.2
Glyma.17G042600 Glycine max HOM05D004817 ORTHO05D005790 6.6e-18 93.6 68 69.1
EL10Ac3g06222 Beta vulgaris HOM05D004817 ORTHO05D005790 1.1e-17 92.8 67 70.1
Eucgr.H04140 Eucalyptus grandis HOM05D004817 ORTHO05D005790 1.1e-17 92.8 66 74.2
MD13G1137200 Malus domestica HOM05D004817 ORTHO05D005790 1.1e-17 92.8 67 76.1
Ciclev10007149m.g Citrus clementina HOM05D004817 ORTHO05D005790 1.9e-17 92.0 68 72.1
MBI18_g46513_MAGBIO Magnolia biondii HOM05D004817 ORTHO05D005790 1.9e-17 92.0 64 75.0
Hund12264 Selenicereus undatus HOM05D004817 ORTHO05D005790 1.9e-17 92.0 63 73.0
Nn4g25286 Nelumbo nucifera HOM05D004817 ORTHO05D005790 2.5e-17 91.7 64 76.6
CiPaw.01G127200 Carya illinoinensis HOM05D004817 ORTHO05D005790 3.3e-17 91.3 65 69.2
MD16G1133100 Malus domestica HOM05D004817 ORTHO05D005790 4.3e-17 90.9 66 74.2
Glyma.09G077700 Glycine max HOM05D004817 ORTHO05D005790 5.6e-17 90.5 67 68.7
Psat1g016600 Pisum sativum HOM05D004817 ORTHO05D005790 5.6e-17 90.5 68 69.1
Cc03_g00010 Coffea canephora HOM05D004817 ORTHO05D005790 7.3e-17 90.1 72 70.8
Aqoxy2G02458 Aquilegia oxysepala HOM05D004817 ORTHO05D005790 1.2e-16 89.4 69 66.7
Nitab4.5_0000978g0020 Nicotiana tabacum HOM05D004817 ORTHO05D005790 1.2e-16 89.4 68 67.6
Lalb_Chr12g0200501 Lupinus albus HOM05D004817 ORTHO05D005790 1.6e-16 89.0 67 68.7
Lalb_Chr23g0276121 Lupinus albus HOM05D004817 ORTHO05D005790 1.6e-16 89.0 65 70.8
Glyma.15G185200 Glycine max HOM05D004817 ORTHO05D005790 2.1e-16 88.6 68 66.2
Thecc.04G314800 Theobroma cacao HOM05D004817 ORTHO05D005790 2.1e-16 88.6 72 68.1
Atru.chr4.3187 Acer truncatum HOM05D004817 ORTHO05D005790 2.8e-16 88.2 73 64.4
Aqoxy5G02845 Aquilegia oxysepala HOM05D004817 ORTHO05D005790 2.8e-16 88.2 67 74.6
Psat4g020640 Pisum sativum HOM05D004817 ORTHO05D005790 3.6e-16 87.8 66 68.2
TPR.G12580 Trifolium pratense HOM05D004817 ORTHO05D005790 3.6e-16 87.8 66 66.7
Cpa.g.sc146.7 Carica papaya HOM05D004817 ORTHO05D005790 4.7e-16 87.4 78 61.5
Lj2g0017510 Lotus japonicus HOM05D004817 ORTHO05D005790 4.7e-16 87.4 65 67.7
Ca_02320_v3 Cicer arietinum L. HOM05D004817 ORTHO05D005790 6.2e-16 87.0 67 70.1
Lalb_Chr07g0181551 Lupinus albus HOM05D004817 ORTHO05D005790 6.2e-16 87.0 68 67.6
Cfa015752 Carpinus fangiana HOM05D004817 ORTHO05D005790 8.1e-16 86.7 67 74.6
MBI18_g40079_MAGBIO Magnolia biondii HOM05D004817 ORTHO05D005790 8.1e-16 86.7 64 70.3
Migut.J01631 Erythranthe guttata HOM05D004817 ORTHO05D005790 1.1e-15 86.3 69 71.0
Lalb_Chr13g0299061 Lupinus albus HOM05D004817 ORTHO05D005790 1.1e-15 86.3 70 65.7
Nitab4.5_0001769g0110 Nicotiana tabacum HOM05D004817 ORTHO05D005790 1.1e-15 86.3 70 68.6
PGR004G2302 Punica granatum HOM05D004817 ORTHO05D005790 1.1e-15 86.3 74 62.2
RcHm_v2.0_Chr4g0427991 Rosa chinensis HOM05D004817 ORTHO05D005790 1.1e-15 86.3 67 65.7
Nitab4.5_0003998g0090 Nicotiana tabacum HOM05D004817 ORTHO05D005790 1.4e-15 85.9 68 64.7
Medtr4g124250 Medicago truncatula HOM05D004817 ORTHO05D005790 1.8e-15 85.5 66 63.6
Nitab4.5_0000745g0110 Nicotiana tabacum HOM05D004817 ORTHO05D005790 2.3e-15 85.1 69 68.1
CDE02G4689 Ceratophyllum demersum HOM05D004817 ORTHO05D005790 3.1e-15 84.7 67 64.2
Lalb_Chr08g0232961 Lupinus albus HOM05D004817 ORTHO05D005790 4.0e-15 84.3 65 69.2
Lalb_Chr11g0073761 Lupinus albus HOM05D004817 ORTHO05D005790 4.0e-15 84.3 65 69.2
Medtr2g044940 Medicago truncatula HOM05D004817 ORTHO05D005790 4.0e-15 84.3 67 65.7
Solyc12g098880.2 Solanum lycopersicum HOM05D004817 ORTHO05D005790 4.0e-15 84.3 65 66.2
Sopen12g033630 Solanum pennellii HOM05D004817 ORTHO05D005790 6.8e-15 83.6 64 67.2
PGSC0003DMG400004597 Solanum tuberosum HOM05D004817 ORTHO05D005790 8.9e-15 83.2 62 69.4
CAN.G305.33 Capsicum annuum HOM05D004817 ORTHO05D005790 1.2e-14 82.8 71 64.8
Lj4g0003186 Lotus japonicus HOM05D004817 ORTHO05D005790 1.2e-14 82.8 65 64.6
PGSC0003DMG400027147 Solanum tuberosum HOM05D004817 ORTHO05D005790 1.2e-14 82.8 71 64.8
Peaxi162Scf00323g00924 Petunia axillaris HOM05D004817 ORTHO05D005790 1.5e-14 82.4 64 67.2
Solyc05g053180.3 Solanum lycopersicum HOM05D004817 ORTHO05D005790 1.5e-14 82.4 71 64.8
Sopen05g031690 Solanum pennellii HOM05D004817 ORTHO05D005790 1.5e-14 82.4 71 64.8
CANSAT25G3847 Cannabis sativa HOM05D004817 ORTHO05D005790 2.6e-14 81.6 75 64.0
PSO761G0543 Papaver somniferum HOM05D004817 ORTHO05D005790 9.9e-14 79.7 67 67.2
CDE08G0719 Ceratophyllum demersum HOM05D004817 ORTHO05D005790 1.7e-13 79.0 66 60.6
Sed0022538 Sechium edule HOM05D004817 ORTHO05D005790 1.7e-13 79.0 69 60.9
FvH4_4g21760 Fragaria vesca HOM05D004817 ORTHO05D005790 4.9e-13 77.4 67 65.7
FAN07G2633 Fragaria x ananassa HOM05D004817 ORTHO05D005790 4.9e-13 77.4 67 65.7
FAN12G2725 Fragaria x ananassa HOM05D004817 ORTHO05D005790 4.9e-13 77.4 67 65.7
Lj6g0012255 Lotus japonicus HOM05D004817 ORTHO05D005790 4.9e-13 77.4 69 63.8
arahy.Tifrunner.gnm1.ann1.XTK2NM Arachis hypogaea HOM05D004817 ORTHO05D005790 6.4e-13 77.0 70 60.0
arahy.Tifrunner.gnm1.ann1.WNQ9XL Arachis hypogaea HOM05D004817 ORTHO05D005790 8.3e-13 76.6 76 56.6
FAN17G1578 Fragaria x ananassa HOM05D004817 ORTHO05D005790 8.3e-13 76.6 67 65.7
Zm00001eb332330 Zea mays HOM05D004817 ORTHO05D005790 1.9e-12 75.5 78 50.0
arahy.Tifrunner.gnm1.ann1.E7NGHZ Arachis hypogaea HOM05D004817 ORTHO05D005790 2.4e-12 75.1 70 58.6
Sed0023994 Sechium edule HOM05D004817 ORTHO05D005790 2.4e-12 75.1 69 58.0
unitig_21.g20684 Utricularia gibba HOM05D004817 ORTHO05D005790 5.4e-12 73.9 65 60.0
AL3G30650 Arabidopsis lyrata HOM05D004817 ORTHO05D005790 9.2e-12 73.2 77 51.9
AT1G48330 Arabidopsis thaliana HOM05D004817 ORTHO05D005790 9.2e-12 73.2 72 52.8
AT3G17580 Arabidopsis thaliana HOM05D004817 ORTHO05D005790 9.2e-12 73.2 77 51.9
arahy.Tifrunner.gnm1.ann1.V5CRDX Arachis hypogaea HOM05D004817 ORTHO05D005790 9.2e-12 73.2 77 51.9
Carub.0003s1729 Capsella rubella HOM05D004817 ORTHO05D005790 1.6e-11 72.4 75 52.0
ClCG05G006950 Citrullus lanatus HOM05D004817 ORTHO05D005790 1.6e-11 72.4 69 56.5
Thhalv10011909m.g Eutrema salsugineum HOM05D004817 ORTHO05D005790 2.1e-11 72.0 74 52.7
AL1G54940 Arabidopsis lyrata HOM05D004817 ORTHO05D005790 2.7e-11 71.6 74 51.4
BcaB06g25835 Brassica carinata HOM05D004817 ORTHO05D005790 2.7e-11 71.6 75 50.7
BcaC05g28773 Brassica carinata HOM05D004817 ORTHO05D005790 2.7e-11 71.6 78 50.0
THA.LOC104821815 Tarenaya hassleriana HOM05D004817 ORTHO05D005790 2.7e-11 71.6 63 58.7
A05p32270 Brassica napus HOM05D004817 ORTHO05D005790 3.5e-11 71.2 78 50.0
C05p48800 Brassica napus HOM05D004817 ORTHO05D005790 3.5e-11 71.2 78 50.0
BolC5t33617H Brassica oleracea HOM05D004817 ORTHO05D005790 3.5e-11 71.2 78 50.0
BraA05t22056Z Brassica rapa HOM05D004817 ORTHO05D005790 3.5e-11 71.2 78 50.0
CARHR037950 Cardamine hirsuta HOM05D004817 ORTHO05D005790 3.5e-11 71.2 74 51.4
Eucgr.H01515 Eucalyptus grandis HOM05D004817 ORTHO05D005790 3.5e-11 71.2 79 53.2
Sp3g15710 Schrenkiella parvula HOM05D004817 ORTHO05D005790 4.6e-11 70.9 78 50.0
unitig_746.g26894 Utricularia gibba HOM05D004817 ORTHO05D005790 4.6e-11 70.9 64 57.8
BcaC05g27577 Brassica carinata HOM05D004817 ORTHO05D005790 6.0e-11 70.5 74 51.4
A05p21090 Brassica napus HOM05D004817 ORTHO05D005790 6.0e-11 70.5 74 51.4
C05p35610 Brassica napus HOM05D004817 ORTHO05D005790 6.0e-11 70.5 74 51.4
BolC5t32277H Brassica oleracea HOM05D004817 ORTHO05D005790 6.0e-11 70.5 74 51.4
BraA05t21012Z Brassica rapa HOM05D004817 ORTHO05D005790 6.0e-11 70.5 74 51.4
Carub.0001s3746 Capsella rubella HOM05D004817 ORTHO05D005790 6.0e-11 70.5 77 49.4
CARHR092890 Cardamine hirsuta HOM05D004817 ORTHO05D005790 6.0e-11 70.5 72 54.2
Thhalv10022414m.g Eutrema salsugineum HOM05D004817 ORTHO05D005790 6.0e-11 70.5 78 50.0
BcaB04g17438 Brassica carinata HOM05D004817 ORTHO05D005790 1.0e-10 69.7 74 50.0
BcaC07g37143 Brassica carinata HOM05D004817 ORTHO05D005790 1.0e-10 69.7 74 50.0
A08p04790 Brassica napus HOM05D004817 ORTHO05D005790 1.0e-10 69.7 74 50.0
BraA08t32509Z Brassica rapa HOM05D004817 ORTHO05D005790 1.0e-10 69.7 74 50.0
CsaV3_3G015620 Cucumis sativus L. HOM05D004817 ORTHO05D005790 1.0e-10 69.7 65 55.4
Sp1g35290 Schrenkiella parvula HOM05D004817 ORTHO05D005790 1.0e-10 69.7 74 50.0
BcaB07g33764 Brassica carinata HOM05D004817 ORTHO05D005790 1.3e-10 69.3 74 50.0
Aa31LG10G5430 Aethionema arabicum HOM05D004817 ORTHO05D005790 1.7e-10 68.9 77 49.4
Aa31LG8G4450 Aethionema arabicum HOM05D004817 ORTHO05D005790 1.7e-10 68.9 81 49.4
BcaC08g43030 Brassica carinata HOM05D004817 ORTHO05D005790 1.7e-10 68.9 74 48.6
C06p02830 Brassica napus HOM05D004817 ORTHO05D005790 1.7e-10 68.9 74 48.6
C08p05160 Brassica napus HOM05D004817 ORTHO05D005790 1.7e-10 68.9 74 50.0
BolC6t35412H Brassica oleracea HOM05D004817 ORTHO05D005790 1.7e-10 68.9 74 48.6
BcaC01g03751 Brassica carinata HOM05D004817 ORTHO05D005790 3.0e-10 68.2 78 48.7
BolC3t17174H Brassica oleracea HOM05D004817 ORTHO05D005790 3.0e-10 68.2 78 48.7
BcaB04g18952 Brassica carinata HOM05D004817 ORTHO05D005790 3.9e-10 67.8 78 47.4
A03p40250 Brassica napus HOM05D004817 ORTHO05D005790 3.9e-10 67.8 78 47.4
C03p48950 Brassica napus HOM05D004817 ORTHO05D005790 3.9e-10 67.8 78 47.4
BraA03t13178Z Brassica rapa HOM05D004817 ORTHO05D005790 3.9e-10 67.8 78 47.4
DCAR_002559 Daucus carota HOM05D004817 ORTHO05D005790 5.1e-10 67.4 78 51.3
Zm00001eb129600 Zea mays HOM05D004817 ORTHO05D005790 5.1e-10 67.4 77 53.2
BcaB04g20835 Brassica carinata HOM05D004817 ORTHO05D005790 6.6e-10 67.0 79 46.8
BraA06t23656Z Brassica rapa HOM05D004817 ORTHO05D005790 6.6e-10 67.0 74 48.6
Haze_00750 Corylus avellana HOM05D004817 ORTHO05D005790 6.6e-10 67.0 58 70.7
ATR0796G174 Amborella trichopoda HOM05D004817 ORTHO05D005790 1.1e-09 66.2 66 50.0
BcaC09g48714 Brassica carinata HOM05D004817 ORTHO05D005790 1.1e-09 66.2 76 47.4
A01p36770 Brassica napus HOM05D004817 ORTHO05D005790 1.5e-09 65.9 77 46.8
BraA01t03738Z Brassica rapa HOM05D004817 ORTHO05D005790 1.5e-09 65.9 77 46.8
CANSAT78G0586 Cannabis sativa HOM05D004817 ORTHO05D005790 1.9e-09 65.5 83 49.4
unitig_744.g24175 Utricularia gibba HOM05D004817 ORTHO05D005790 2.5e-09 65.1 67 52.2
HPP92_010590 Vanilla planifolia HOM05D004817 ORTHO05D005790 2.5e-09 65.1 50 68.0
DCAR_030417 Daucus carota HOM05D004817 ORTHO05D005790 5.6e-09 63.9 84 48.8
DCAR_023420 Daucus carota HOM05D004817 ORTHO05D005790 1.2e-08 62.8 70 57.1
DCAR_026926 Daucus carota HOM05D004817 ORTHO05D005790 1.2e-08 62.8 76 50.0
Os01g0288200 Oryza sativa ssp. japonica HOM05D004817 ORTHO05D005790 4.7e-08 60.8 74 48.6
TAR365G0774 Trochodendron aralioides HOM05D004817 ORTHO05D005790 8.1e-08 60.1 80 48.8
Zm00001eb354550 Zea mays HOM05D004817 ORTHO05D005790 8.9e-07 56.6 95 41.1


User provided reference genes

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