Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu001697.1 Olea europaea HOM05D007247 ORTHO05D009208 7.9e-49 196.8 101 100.0
MSTRG.13349 Avicennia marina HOM05D007247 ORTHO05D009208 6.1e-25 117.5 103 57.3
Dinv14726 Davidia involucrata HOM05D007247 ORTHO05D009208 1.4e-21 106.3 105 61.9
Hma1.2p1_0079F.1_g041000 Hydrangea macrophylla HOM05D007247 ORTHO05D009208 4.1e-21 104.8 91 63.7
Potri.008G186200 Populus trichocarpa HOM05D007247 ORTHO05D009208 1.5e-20 102.8 99 57.6
Oeu057538.1 Olea europaea HOM05D007247 ORTHO05D009208 1.3e-19 99.8 93 58.1
Dinv15222 Davidia involucrata HOM05D007247 ORTHO05D009208 1.7e-19 99.4 102 57.8
Potri.010G046700 Populus trichocarpa HOM05D007247 ORTHO05D009208 3.8e-19 98.2 88 60.2
Sabra10G0021600 Salix brachista HOM05D007247 ORTHO05D009208 5.0e-19 97.8 88 59.1
Actinidia15099 Actinidia chinensis HOM05D000233 ORTHO05D000020 5.5e-18 94.4 96 55.2
CiPaw.06G067400 Carya illinoinensis HOM05D007247 ORTHO05D009208 9.4e-18 93.6 93 59.1
Thecc.02G261000 Theobroma cacao HOM05D007247 ORTHO05D009208 2.1e-17 92.4 90 58.9
Medtr8g069350 Medicago truncatula HOM05D007247 ORTHO05D009208 2.7e-17 92.0 89 58.4
Lj6E813T0 Lonicera japonica HOM05D007247 ORTHO05D009208 3.6e-17 91.7 93 57.0
Peaxi162Scf00128g00216 Petunia axillaris HOM05D007247 ORTHO05D009208 3.6e-17 91.7 91 58.2
QL03p057801 Quercus lobata HOM05D007247 ORTHO05D009208 3.6e-17 91.7 101 55.4
SalBow8G0600 Salvia bowleyana HOM05D007247 ORTHO05D009208 4.7e-17 91.3 98 48.0
CiPaw.05G181400 Carya illinoinensis HOM05D007247 ORTHO05D009208 7.9e-17 90.5 87 62.1
Manes.12G022500 Manihot esculenta HOM05D007247 ORTHO05D009208 7.9e-17 90.5 69 66.7
GSVIVG01005747001 Vitis vinifera HOM05D000233 ORTHO05D000020 7.9e-17 90.5 99 54.5
HanXRQChr12g0385811 Helianthus annuus HOM05D007247 ORTHO05D009208 1.4e-16 89.7 79 62.0
Glyma.08G281800 Glycine max HOM05D007247 ORTHO05D009208 1.8e-16 89.4 87 55.2
Lsat_1_v5_gn_4_4161 Lactuca sativa HOM05D007247 ORTHO05D009208 1.8e-16 89.4 70 70.0
Duzib248G0486 Durio zibethinus HOM05D007247 ORTHO05D009208 3.9e-16 88.2 97 53.6
Cfa009217 Carpinus fangiana HOM05D007247 ORTHO05D009208 5.1e-16 87.8 79 59.5
Duzib251G0560 Durio zibethinus HOM05D007247 ORTHO05D009208 1.1e-15 86.7 95 55.8
Actinidia01350 Actinidia chinensis HOM05D000233 ORTHO05D000020 1.5e-15 86.3 93 57.0
Solyc05g013560.3 Solanum lycopersicum HOM05D007247 ORTHO05D009208 1.5e-15 86.3 93 54.8
Lj4g0020020 Lotus japonicus HOM05D007247 ORTHO05D009208 2.0e-15 85.9 83 59.0
Phvul.003G064700 Phaseolus vulgaris HOM05D007247 ORTHO05D009208 2.0e-15 85.9 84 54.8
Psat4g115600 Pisum sativum HOM05D007247 ORTHO05D009208 2.0e-15 85.9 81 54.3
Gohir.A03G134800 Gossypium hirsutum HOM05D007247 ORTHO05D009208 2.6e-15 85.5 101 49.5
Gohir.D02G158400 Gossypium hirsutum HOM05D007247 ORTHO05D009208 2.6e-15 85.5 101 49.5
Gorai.005G177800 Gossypium raimondii HOM05D007247 ORTHO05D009208 2.6e-15 85.5 101 49.5
Atru.chr11.2143 Acer truncatum HOM05D007247 ORTHO05D009208 3.3e-15 85.1 83 57.8
VMungo0251G0750 Vigna mungo HOM05D007247 ORTHO05D009208 3.3e-15 85.1 83 55.4
C03p73320 Brassica napus HOM05D007247 ORTHO05D009208 4.4e-15 84.7 60 68.3
Haze_12254 Corylus avellana HOM05D007247 ORTHO05D009208 4.4e-15 84.7 79 58.2
A08p26670 Brassica napus HOM05D007247 ORTHO05D009208 5.7e-15 84.3 71 62.0
Cfa009218 Carpinus fangiana HOM05D007247 ORTHO05D009208 5.7e-15 84.3 95 52.6
Ca_22588_v3 Cicer arietinum L. HOM05D007247 ORTHO05D009208 5.7e-15 84.3 86 55.8
Glyma.18G144900 Glycine max HOM05D007247 ORTHO05D009208 5.7e-15 84.3 54 74.1
Rhsim12G0040300 Rhododendron simsii HOM05D007247 ORTHO05D009208 5.7e-15 84.3 83 61.4
BcaB03g15384 Brassica carinata HOM05D007247 ORTHO05D009208 7.4e-15 84.0 84 56.0
BraA08t34615Z Brassica rapa HOM05D007247 ORTHO05D009208 7.4e-15 84.0 71 62.0
BcaC08g46018 Brassica carinata HOM05D007247 ORTHO05D009208 1.3e-14 83.2 84 56.0
A07p32290 Brassica napus HOM05D007247 ORTHO05D009208 1.3e-14 83.2 84 56.0
C06p38130 Brassica napus HOM05D007247 ORTHO05D009208 1.3e-14 83.2 84 56.0
BolC6t38910H Brassica oleracea HOM05D007247 ORTHO05D009208 1.3e-14 83.2 84 56.0
BraA07t30854Z Brassica rapa HOM05D007247 ORTHO05D009208 1.3e-14 83.2 84 56.0
Sopen05g008460 Solanum pennellii HOM05D007247 ORTHO05D009208 1.3e-14 83.2 93 52.7
Thhalv10009220m.g Eutrema salsugineum HOM05D007247 ORTHO05D009208 1.7e-14 82.8 60 65.0
Actinidia08135 Actinidia chinensis HOM05D007247 ORTHO05D009208 3.7e-14 81.6 90 56.7
BcaC01g01656 Brassica carinata HOM05D007247 ORTHO05D009208 3.7e-14 81.6 60 66.7
BolC3t19629H Brassica oleracea HOM05D007247 ORTHO05D009208 3.7e-14 81.6 60 66.7
CANSAT01G0364 Cannabis sativa HOM05D007247 ORTHO05D009208 3.7e-14 81.6 56 73.2
Carub.0001s2551 Capsella rubella HOM05D007247 ORTHO05D009208 4.8e-14 81.3 61 63.9
Ciclev10033189m.g Citrus clementina HOM05D007247 ORTHO05D009208 4.8e-14 81.3 105 54.3
DCAR_026511 Daucus carota HOM05D007247 ORTHO05D009208 4.8e-14 81.3 62 71.0
Sp1g23190 Schrenkiella parvula HOM05D007247 ORTHO05D009208 4.8e-14 81.3 60 65.0
TPR.G38802 Trifolium pratense HOM05D007247 ORTHO05D009208 6.3e-14 80.9 66 60.6
BcaB03g12051 Brassica carinata HOM05D007247 ORTHO05D009208 8.2e-14 80.5 76 56.6
CARHR026490 Cardamine hirsuta HOM05D007247 ORTHO05D009208 1.1e-13 80.1 52 71.2
COL.COLO4_04829 Corchorus olitorius HOM05D007247 ORTHO05D009208 1.4e-13 79.7 70 58.6
HanXRQChr17g0569581 Helianthus annuus HOM05D007247 ORTHO05D009208 1.8e-13 79.3 68 63.2
Prupe.1G245600 Prunus persica HOM05D007247 ORTHO05D009208 2.4e-13 79.0 72 61.1
Aa31sc790G10 Aethionema arabicum HOM05D007247 ORTHO05D009208 3.1e-13 78.6 59 62.7
Sc04g0009510 Simmondsia chinensis HOM05D007247 ORTHO05D009208 3.1e-13 78.6 102 48.0
AL1G40330 Arabidopsis lyrata HOM05D007247 ORTHO05D009208 5.3e-13 77.8 62 58.1
Eucgr.H02494 Eucalyptus grandis HOM05D007247 ORTHO05D009208 9.1e-13 77.0 77 54.5
AT1G67910 Arabidopsis thaliana HOM05D007247 ORTHO05D009208 1.2e-12 76.6 68 60.3
Medtr5g032790 Medicago truncatula HOM05D007247 ORTHO05D009208 1.2e-12 76.6 66 57.6
Psat2g084240 Pisum sativum HOM05D007247 ORTHO05D009208 1.2e-12 76.6 80 52.5
unitig_8.g3935 Utricularia gibba HOM05D007247 ORTHO05D009208 1.2e-12 76.6 69 63.8
AL2G26710 Arabidopsis lyrata HOM05D007247 ORTHO05D009208 1.6e-12 76.3 79 50.6
Carub.0002s1440 Capsella rubella HOM05D007247 ORTHO05D009208 3.5e-12 75.1 77 53.2
MD16G1101300 Malus domestica HOM05D007247 ORTHO05D009208 4.5e-12 74.7 86 52.3
CSS0032991 Camellia sinensis var. sinensis HOM05D007247 ORTHO05D009208 5.9e-12 74.3 53 73.6
CSS0043579 Camellia sinensis var. sinensis HOM05D007247 ORTHO05D009208 5.9e-12 74.3 53 73.6
Migut.E00205 Erythranthe guttata HOM05D000233 ORTHO05D000020 7.7e-12 73.9 45 75.6
Manes.13G023600 Manihot esculenta HOM05D007247 ORTHO05D009208 7.7e-12 73.9 51 70.6
TPR.G17749 Trifolium pratense HOM05D007247 ORTHO05D009208 7.7e-12 73.9 81 51.9
AT1G24577 Arabidopsis thaliana HOM05D007247 ORTHO05D009208 1.3e-11 73.2 52 61.5
Nn4g22599 Nelumbo nucifera HOM05D007247 ORTHO05D009208 1.3e-11 73.2 50 74.0
THA.LOC104825564 Tarenaya hassleriana HOM05D007247 ORTHO05D009208 1.3e-11 73.2 60 61.7
ECA234G3809 Erigeron canadensis HOM05D007247 ORTHO05D009208 1.7e-11 72.8 92 48.9
Lalb_Chr09g0326081 Lupinus albus HOM05D007247 ORTHO05D009208 1.7e-11 72.8 80 53.8
MD13G1100900 Malus domestica HOM05D007247 ORTHO05D009208 2.2e-11 72.4 76 51.3
TAR622G0973 Trochodendron aralioides HOM05D007247 ORTHO05D009208 5.0e-11 71.2 85 52.9
Aqoxy5G03750 Aquilegia oxysepala HOM05D007247 ORTHO05D009208 1.1e-10 70.1 50 68.0
TAR629G1528 Trochodendron aralioides HOM05D007247 ORTHO05D009208 1.5e-10 69.7 98 43.9
TAR636G3342 Trochodendron aralioides HOM05D007247 ORTHO05D009208 2.5e-10 68.9 73 52.1
AUR62024275 Chenopodium quinoa HOM05D007247 ORTHO05D009208 3.2e-10 68.6 68 58.8
EL10Ac6g13820 Beta vulgaris HOM05D007247 ORTHO05D009208 4.2e-10 68.2 73 50.7
Aqoxy3G01230 Aquilegia oxysepala HOM05D007247 ORTHO05D009208 9.4e-10 67.0 56 64.3
TAR636G3092 Trochodendron aralioides HOM05D007247 ORTHO05D009208 1.2e-09 66.6 73 50.7
FvH4_4g25640 Fragaria vesca HOM05D007247 ORTHO05D009208 2.1e-09 65.9 95 42.1
FAN07G0181 Fragaria x ananassa HOM05D007247 ORTHO05D009208 2.7e-09 65.5 103 38.8
FAN12G2765 Fragaria x ananassa HOM05D007247 ORTHO05D009208 3.6e-09 65.1 95 42.1
FAN17G2797 Fragaria x ananassa HOM05D007247 ORTHO05D009208 3.6e-09 65.1 95 43.2
FAN22G0007 Fragaria x ananassa HOM05D007247 ORTHO05D009208 4.7e-09 64.7 94 42.6
FAN22G1782 Fragaria x ananassa HOM05D007247 ORTHO05D009208 4.7e-09 64.7 94 42.6
AUR62005467 Chenopodium quinoa HOM05D007247 ORTHO05D009208 6.1e-09 64.3 66 54.5
Phvul.006G059230 Phaseolus vulgaris HOM05D006736 ORTHO05D008459 8.0e-09 63.9 83 47.0
ATR0824G192 Amborella trichopoda HOM05D007247 ORTHO05D009208 1.4e-08 63.2 56 64.3
DCAR_024425 Daucus carota HOM05D000669 ORTHO05D000679 1.8e-08 62.8 59 59.3
unitig_22.g5530 Utricularia gibba HOM05D007247 ORTHO05D009208 3.0e-08 62.0 72 51.4
Lj6g0005510 Lotus japonicus HOM05D006736 ORTHO05D008459 5.2e-08 61.2 67 49.3
PSO063G6114 Papaver somniferum HOM05D007247 ORTHO05D009208 5.2e-08 61.2 92 50.0
LjContig00081g0022969 Lotus japonicus HOM05D006736 ORTHO05D008459 8.8e-08 60.5 63 52.4
PSO754G0004 Papaver somniferum HOM05D007247 ORTHO05D009208 1.1e-07 60.1 92 48.9
Nitab4.5_0000740g0080 Nicotiana tabacum HOM05D032858 ORTHO05D036913 2.6e-07 58.9 99 45.5
RcHm_v2.0_Chr4g0433081 Rosa chinensis HOM05D007247 ORTHO05D009208 2.6e-07 58.9 73 50.7
Rhsim06G0178800 Rhododendron simsii HOM05D006736 ORTHO05D008459 5.7e-07 57.8 39 64.1
Solyc12g006220.3 Solanum lycopersicum HOM05D006736 ORTHO05D008459 7.5e-07 57.4 55 50.9
Sopen12g002170 Solanum pennellii HOM05D006736 ORTHO05D008459 7.5e-07 57.4 55 50.9
VMungo0540G0896 Vigna mungo HOM05D006736 ORTHO05D008459 7.5e-07 57.4 79 46.8
AT5G55980 Arabidopsis thaliana HOM05D006736 ORTHO05D008459 1.3e-06 56.6 37 70.3
Glyma.08G332400 Glycine max HOM05D006736 ORTHO05D008459 1.7e-06 56.2 83 34.9
Glyma.18G074500 Glycine max HOM05D006736 ORTHO05D008459 2.2e-06 55.8 90 37.8
Aa31LG3G11890 Aethionema arabicum HOM05D006736 ORTHO05D008459 2.8e-06 55.5 50 54.0
AL8G31560 Arabidopsis lyrata HOM05D006736 ORTHO05D008459 2.8e-06 55.5 63 52.4
ClCG10G003900 Citrullus lanatus HOM05D006736 ORTHO05D008459 2.8e-06 55.5 63 47.6
ClCG10G004060 Citrullus lanatus HOM05D006736 ORTHO05D008459 2.8e-06 55.5 63 47.6
TAR624G0983 Trochodendron aralioides HOM05D006736 ORTHO05D008459 2.8e-06 55.5 55 50.9
COL.COLO4_07740 Corchorus olitorius HOM05D006736 ORTHO05D008459 6.3e-06 54.3 52 57.7
CsaV3_3G003890 Cucumis sativus L. HOM05D006736 ORTHO05D008459 6.3e-06 54.3 63 49.2
Peaxi162Scf01164g00020 Petunia axillaris HOM05D006736 ORTHO05D008459 6.3e-06 54.3 28 85.7
Sc03g0011540 Simmondsia chinensis HOM05D006736 ORTHO05D008459 8.2e-06 53.9 39 59.0
Solyc07g045200.1 Solanum lycopersicum HOM05D006736 ORTHO05D008459 8.2e-06 53.9 39 69.2


User provided reference genes

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