Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu001572.1 Olea europaea HOM05D004641 ORTHO05D005871 6.3e-152 540.8 287 100.0
MSTRG.7808 Avicennia marina HOM05D004641 ORTHO05D005871 3.7e-120 435.3 289 78.2
Lj3A1038G72 Lonicera japonica HOM05D004641 ORTHO05D005871 3.9e-117 425.2 285 75.4
SalBow2G2171 Salvia bowleyana HOM05D004641 ORTHO05D005871 3.9e-117 425.2 287 77.7
Solyc05g007450.3 Solanum lycopersicum HOM05D004641 ORTHO05D005871 1.2e-115 420.2 287 76.0
Cc11_g13100 Coffea canephora HOM05D004641 ORTHO05D005871 2.8e-115 419.1 287 73.9
PGSC0003DMG400003384 Solanum tuberosum HOM05D004641 ORTHO05D005871 1.4e-114 416.8 287 75.3
CSS0000565 Camellia sinensis var. sinensis HOM05D004641 ORTHO05D005871 1.8e-114 416.4 281 74.0
CSS0029182 Camellia sinensis var. sinensis HOM05D004641 ORTHO05D005871 3.1e-114 415.6 281 73.7
Sopen05g003330 Solanum pennellii HOM05D004641 ORTHO05D005871 8.9e-114 414.1 287 74.9
Peaxi162Scf00541g00527 Petunia axillaris HOM05D004641 ORTHO05D005871 9.9e-113 410.6 287 74.2
Nitab4.5_0000703g0120 Nicotiana tabacum HOM05D004641 ORTHO05D005871 3.7e-112 408.7 287 73.9
PGR102G3009 Punica granatum HOM05D004641 ORTHO05D005871 1.1e-111 407.1 288 70.5
GSVIVG01020002001 Vitis vinifera HOM05D004641 ORTHO05D005871 1.1e-111 407.1 282 73.4
Migut.L01304 Erythranthe guttata HOM05D004641 ORTHO05D005871 5.4e-111 404.8 280 75.0
FAN22G2174 Fragaria x ananassa HOM05D004641 ORTHO05D005871 1.6e-110 403.3 289 72.0
FvH4_4g31460 Fragaria vesca HOM05D004641 ORTHO05D005871 3.5e-110 402.1 289 71.3
RcHm_v2.0_Chr4g0439951 Rosa chinensis HOM05D004641 ORTHO05D005871 6.0e-110 401.4 281 72.6
CANSAT64G1560 Cannabis sativa HOM05D004641 ORTHO05D005871 1.0e-109 400.6 285 70.2
Prupe.1G273100 Prunus persica HOM05D004641 ORTHO05D005871 2.3e-109 399.4 281 71.2
Cpa.g.sc128.14 Carica papaya HOM05D004641 ORTHO05D005871 6.6e-109 397.9 288 69.4
Actinidia04038 Actinidia chinensis HOM05D004641 ORTHO05D005871 8.6e-109 397.5 283 71.0
TAR629G2466 Trochodendron aralioides HOM05D004641 ORTHO05D005871 8.6e-109 397.5 287 71.8
HanXRQChr12g0362561 Helianthus annuus HOM05D004641 ORTHO05D005871 1.5e-108 396.7 283 70.3
CAN.G58.35 Capsicum annuum HOM05D004641 ORTHO05D005871 9.5e-108 394.0 287 71.8
Potri.011G083700 Populus trichocarpa HOM05D004641 ORTHO05D005871 9.5e-108 394.0 286 69.2
Eucgr.B03435 Eucalyptus grandis HOM05D004641 ORTHO05D005871 1.2e-107 393.7 288 69.4
DCAR_007149 Daucus carota HOM05D004641 ORTHO05D005871 2.1e-107 392.9 289 70.6
CiPaw.05G136500 Carya illinoinensis HOM05D004641 ORTHO05D005871 2.8e-107 392.5 281 70.5
TWI12G0809 Tripterygium wilfordii HOM05D004641 ORTHO05D005871 3.6e-107 392.1 281 69.0
Ciclev10032310m.g Citrus clementina HOM05D004641 ORTHO05D005871 1.8e-106 389.8 281 69.4
QL03p064370 Quercus lobata HOM05D004641 ORTHO05D005871 5.2e-106 388.3 281 69.8
THA.LOC104822117 Tarenaya hassleriana HOM05D004641 ORTHO05D005871 5.2e-106 388.3 281 69.4
ECA233G1872 Erigeron canadensis HOM05D004641 ORTHO05D005871 1.5e-105 386.7 283 67.1
FAN17G1817 Fragaria x ananassa HOM05D004641 ORTHO05D005871 2.6e-105 386.0 299 67.9
Phvul.002G086150 Phaseolus vulgaris HOM05D004641 ORTHO05D005871 2.6e-105 386.0 281 68.3
SGA_v2.0_scaffold302G47825 Striga asiatica HOM05D004641 ORTHO05D005871 2.6e-105 386.0 290 73.4
Ca_24263_v3 Cicer arietinum L. HOM05D004641 ORTHO05D005871 3.4e-105 385.6 281 68.3
Medtr5g040250 Medicago truncatula HOM05D004641 ORTHO05D005871 7.6e-105 384.4 281 68.3
Duzib268G0036 Durio zibethinus HOM05D004641 ORTHO05D005871 9.9e-105 384.0 282 69.9
Gorai.013G084700 Gossypium raimondii HOM05D004641 ORTHO05D005871 1.7e-104 383.3 278 70.1
HanXRQChr08g0210501 Helianthus annuus HOM05D004641 ORTHO05D005871 2.2e-104 382.9 283 68.6
COL.COLO4_22996 Corchorus olitorius HOM05D004641 ORTHO05D005871 2.9e-104 382.5 282 69.5
Medtr7g039370 Medicago truncatula HOM05D004641 ORTHO05D005871 3.8e-104 382.1 281 68.0
Glyma.02G106600 Glycine max HOM05D004641 ORTHO05D005871 6.4e-104 381.3 277 68.6
FAN07G1510 Fragaria x ananassa HOM05D004641 ORTHO05D005871 8.4e-104 380.9 271 71.2
MD13G1073100 Malus domestica HOM05D004641 ORTHO05D005871 1.4e-103 380.2 259 72.2
TAR622G0412 Trochodendron aralioides HOM05D004641 ORTHO05D005871 2.4e-103 379.4 287 68.6
Gohir.A13G074000 Gossypium hirsutum HOM05D004641 ORTHO05D005871 3.2e-103 379.0 278 69.4
Gohir.D13G074100 Gossypium hirsutum HOM05D004641 ORTHO05D005871 5.4e-103 378.3 278 69.4
Glyma.01G046400 Glycine max HOM05D004641 ORTHO05D005871 7.1e-103 377.9 278 68.3
VMungo1215G3365 Vigna mungo HOM05D004641 ORTHO05D005871 7.1e-103 377.9 281 66.9
AUR62005767 Chenopodium quinoa HOM05D004641 ORTHO05D005871 1.2e-102 377.1 282 68.4
FAN12G2116 Fragaria x ananassa HOM05D001668 ORTHO05D005871 1.2e-102 377.1 271 70.1
Nn3g17219 Nelumbo nucifera HOM05D004641 ORTHO05D005871 1.6e-102 376.7 295 66.8
Psat2g121160 Pisum sativum HOM05D004641 ORTHO05D005871 2.7e-102 375.9 281 68.0
Lalb_Chr10g0098211 Lupinus albus HOM05D004641 ORTHO05D005871 3.5e-102 375.6 282 67.7
AUR62028790 Chenopodium quinoa HOM05D004641 ORTHO05D005871 7.8e-102 374.4 282 68.1
ClCG11G009310 Citrullus lanatus HOM05D004641 ORTHO05D005871 3.9e-101 372.1 284 65.8
MBI05_g35443_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 3.9e-101 372.1 292 65.8
Lj2g0007835 Lotus japonicus HOM05D004641 ORTHO05D005871 5.1e-101 371.7 290 66.6
Hund25250 Selenicereus undatus HOM05D004641 ORTHO05D005871 5.1e-101 371.7 279 68.1
Nitab4.5_0012364g0020 Nicotiana tabacum HOM05D004641 ORTHO05D005871 3.3e-100 369.0 287 68.3
SGA_v2.0_scaffold53G19380 Striga asiatica HOM05D004641 ORTHO05D005871 5.6e-100 368.2 290 69.7
PSO478G0089 Papaver somniferum HOM05D004641 ORTHO05D005871 1.2e-99 367.1 285 64.9
Sabra11G0066400 Salix brachista HOM05D004641 ORTHO05D005871 1.6e-99 366.7 280 66.8
PSO017G4882 Papaver somniferum HOM05D004641 ORTHO05D005871 4.0e-98 362.1 285 64.9
CiPaw.06G083900 Carya illinoinensis HOM05D004641 ORTHO05D005871 6.9e-98 361.3 244 74.2
BcaC05g26381 Brassica carinata HOM05D004641 ORTHO05D005871 9.0e-98 360.9 284 67.3
C05p24110 Brassica napus HOM05D004641 ORTHO05D005871 9.0e-98 360.9 284 67.3
BolC5t31146H Brassica oleracea HOM05D004641 ORTHO05D005871 9.0e-98 360.9 284 67.3
Aqoxy3G03361 Aquilegia oxysepala HOM05D004641 ORTHO05D005871 3.4e-97 359.0 294 65.3
EL10Ac6g13193 Beta vulgaris HOM05D004641 ORTHO05D005871 4.4e-97 358.6 316 61.4
A09p40260 Brassica napus HOM05D004641 ORTHO05D005871 4.4e-97 358.6 278 68.0
vmacro04307 Vaccinium macrocarpon HOM05D004641 ORTHO05D005871 4.4e-97 358.6 229 75.5
BraA09t39524Z Brassica rapa HOM05D004641 ORTHO05D005871 9.9e-97 357.5 278 68.0
Thhalv10008398m.g Eutrema salsugineum HOM05D004641 ORTHO05D005871 2.2e-96 356.3 287 67.2
Rhsim07G0243500 Rhododendron simsii HOM05D004641 ORTHO05D005871 3.8e-96 355.5 232 74.6
Zm00001eb328260 Zea mays HOM05D004641 ORTHO05D005871 3.8e-96 355.5 287 64.1
AL1G38720 Arabidopsis lyrata HOM05D004641 ORTHO05D005871 4.9e-96 355.1 284 66.2
Aa31LG7G8260 Aethionema arabicum HOM05D004641 ORTHO05D005871 6.4e-96 354.8 281 66.2
Manes.01G186500 Manihot esculenta HOM05D004641 ORTHO05D005871 6.4e-96 354.8 229 76.9
CARHR025060 Cardamine hirsuta HOM05D004641 ORTHO05D005871 8.4e-96 354.4 284 66.2
CsaV3_2G010800 Cucumis sativus L. HOM05D004641 ORTHO05D005871 8.4e-96 354.4 281 62.3
HPP92_016908 Vanilla planifolia HOM05D004641 ORTHO05D005871 8.4e-96 354.4 288 64.9
Carub.0001s2410 Capsella rubella HOM05D004641 ORTHO05D005871 7.1e-95 351.3 277 67.9
AT1G26840 Arabidopsis thaliana HOM05D004641 ORTHO05D005871 1.2e-94 350.5 284 64.8
Sp1g21940 Schrenkiella parvula HOM05D004641 ORTHO05D005871 1.6e-94 350.1 284 65.1
BcaC07g39267 Brassica carinata HOM05D004641 ORTHO05D005871 2.7e-94 349.4 277 67.1
C08p22760 Brassica napus HOM05D004641 ORTHO05D005871 2.7e-94 349.4 277 67.1
BolC8t49912H Brassica oleracea HOM05D004641 ORTHO05D005871 2.7e-94 349.4 277 67.1
Haze_12020 Corylus avellana HOM05D004641 ORTHO05D005871 3.5e-94 349.0 281 64.1
Os07g0628600 Oryza sativa ssp. japonica HOM05D004641 ORTHO05D005871 7.8e-94 347.8 293 62.1
BraA08t34696Z Brassica rapa HOM05D004641 ORTHO05D005871 1.0e-93 347.4 277 66.8
Thecc.02G351000 Theobroma cacao HOM05D004641 ORTHO05D005871 1.7e-93 346.7 230 75.2
MELO3C008530.2 Cucumis melo HOM05D004641 ORTHO05D005871 2.3e-93 346.3 265 64.2
A08p27580 Brassica napus HOM05D004641 ORTHO05D005871 3.0e-93 345.9 276 66.7
BcaB03g12011 Brassica carinata HOM05D004641 ORTHO05D005871 5.1e-93 345.1 284 64.8
Sc11g0001860 Simmondsia chinensis HOM05D004641 ORTHO05D005871 1.1e-92 344.0 281 63.0
Atru.chr11.1801 Acer truncatum HOM05D004641 ORTHO05D005871 3.3e-92 342.4 216 78.7
Ah.03g135170 Amaranthus hybridus HOM05D004641 ORTHO05D005871 1.3e-91 340.5 275 65.5
Aqoxy5G03781 Aquilegia oxysepala HOM05D004641 ORTHO05D005871 6.2e-91 338.2 294 61.6
arahy.Tifrunner.gnm1.ann1.K7EFN7 Arachis hypogaea HOM05D004641 ORTHO05D005871 1.4e-90 337.0 287 61.3
Lalb_Chr17g0340601 Lupinus albus HOM05D004641 ORTHO05D005871 5.3e-90 335.1 244 68.4
MD16G1074100 Malus domestica HOM05D004641 ORTHO05D005871 2.0e-89 333.2 277 63.9
Sed0021592 Sechium edule HOM05D004641 ORTHO05D005871 3.8e-88 328.9 281 60.9
Lsat_1_v5_gn_8_52860 Lactuca sativa HOM05D004641 ORTHO05D005871 1.9e-87 326.6 287 60.3
Oeu054890.1 Olea europaea HOM05D004641 ORTHO05D005871 1.9e-87 326.6 229 74.2
Oeu054889.1 Olea europaea HOM05D004641 ORTHO05D005871 1.6e-86 323.6 229 73.8
arahy.Tifrunner.gnm1.ann1.ITG5Q4 Arachis hypogaea HOM05D004641 ORTHO05D005871 2.7e-86 322.8 288 58.3
Sp5g24800 Schrenkiella parvula HOM05D004641 ORTHO05D005871 8.7e-85 317.8 252 66.3
Sed0002473 Sechium edule HOM05D004641 ORTHO05D005871 3.3e-84 315.8 239 64.9
CDE04G3358 Ceratophyllum demersum HOM05D004641 ORTHO05D005871 9.6e-84 314.3 297 57.9
Psat0s2466g0040 Pisum sativum HOM05D004641 ORTHO05D005871 2.8e-83 312.8 286 59.8
Dinv16637 Davidia involucrata HOM05D004641 ORTHO05D005871 1.8e-82 310.1 211 75.4
ATR0800G170 Amborella trichopoda HOM05D004641 ORTHO05D005871 9.9e-81 304.3 229 66.4
CARHR062650 Cardamine hirsuta HOM05D004641 ORTHO05D005871 2.5e-79 299.7 244 63.9
SEGI_09090 Sequoiadendron giganteum HOM05D004641 ORTHO05D005871 2.3e-77 293.1 228 62.3
SHI55061 Sapria himalayana HOM05D004641 ORTHO05D005871 1.0e-72 277.7 234 62.0
AagrBONN_evm.TU.Sc2ySwM_228.4149 Anthoceros agrestis HOM05D004641 ORTHO05D005871 1.4e-71 273.9 292 46.9
Mapoly0064s0110 Marchantia polymorpha HOM05D004641 ORTHO05D005871 1.3e-67 260.8 291 50.9
Pp3c13_2030 Physcomitrium patens HOM05D004641 ORTHO05D005871 2.8e-67 259.6 289 47.1
unitig_22.g6910 Utricularia gibba HOM05D004641 ORTHO05D005871 5.5e-63 245.4 265 54.7
MBI09_g01021_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 3.4e-57 226.1 210 59.5
SMO114G0050 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 3.8e-56 222.6 197 52.3
SMO117G0352 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 1.4e-55 220.7 197 52.3
SMO254G0007 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 4.2e-55 219.2 197 51.3
SMO254G0005 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 9.4e-55 218.0 197 51.3
Gohir.A01G134350 Gossypium hirsutum HOM05D004641 ORTHO05D005871 3.6e-54 216.1 156 66.7
Gohir.A07G052500 Gossypium hirsutum HOM05D004641 ORTHO05D005871 7.4e-52 208.4 157 66.9
MBI02_g14195_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 4.1e-50 202.6 211 55.0
MBI05_g01300_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 1.3e-48 197.6 224 51.8
CDE08G0800 Ceratophyllum demersum HOM05D004641 ORTHO05D005871 8.5e-48 194.9 265 46.8
Gohir.A08G223448 Gossypium hirsutum HOM05D004641 ORTHO05D005871 6.1e-46 188.7 135 69.6
SMO254G0008 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 1.8e-45 187.2 197 46.7
MBI10_g44256_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 2.2e-40 170.2 171 55.0
CBR_g31088 Chara braunii HOM05D000019 ORTHO05D000048 1.3e-35 154.5 186 44.6
SMO254G0011 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 3.6e-30 136.3 183 39.3
MD16G1073900 Malus domestica HOM05D004641 ORTHO05D005871 1.8e-29 134.0 83 79.5
Thecc.03G087000 Theobroma cacao HOM05D004641 ORTHO05D005871 3.0e-29 133.3 119 60.5
SMO254G0019 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 4.4e-28 129.4 199 37.2
MBI10_g06043_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 4.1e-26 122.9 206 40.8
Cre06.g285650 Chlamydomonas reinhardtii HOM05D004641 ORTHO05D005871 7.7e-25 118.6 192 39.1
TPR.G37129 Trifolium pratense HOM05D004641 ORTHO05D005871 1.7e-24 117.5 76 73.7
MBI10_g47167_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 2.3e-24 117.1 193 44.0
C05p19510 Brassica napus HOM05D004641 ORTHO05D005871 5.5e-23 112.5 99 59.6
BolC5t30653H Brassica oleracea HOM05D004641 ORTHO05D005871 5.5e-23 112.5 99 59.6
MBI13_g45115_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 4.5e-17 92.8 59 74.6
MBI14_g27757_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 2.3e-16 90.5 58 72.4
MBI18_g33078_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 2.9e-16 90.1 57 73.7
MBI11_g16036_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 1.9e-15 87.4 58 70.7
CBR_g31090 Chara braunii HOM05D004641 ORTHO05D005871 5.6e-15 85.9 91 45.1
MBI16_g45579_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 2.3e-13 80.5 64 64.1
MBI13_g16082_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 3.4e-12 76.6 54 68.5
A10p02040 Brassica napus HOM05D000207 ORTHO05D013918 5.4e-10 69.3 51 62.7
A02p16560 Brassica napus HOM05D004641 ORTHO05D005871 3.9e-08 63.2 98 40.8
A09p47150 Brassica napus HOM05D004641 ORTHO05D022007 1.2e-06 58.2 60 55.0
BraA09t40177Z Brassica rapa HOM05D004641 ORTHO05D022007 1.2e-06 58.2 60 55.0
EL10Ac2g04116 Beta vulgaris HOM05D004641 ORTHO05D005871 3.6e-06 56.6 46 60.9
A09p29530 Brassica napus HOM05D004641 ORTHO05D022007 8.0e-06 55.5 61 50.8
BolC6t36313H Brassica oleracea HOM05D004641 ORTHO05D022007 8.0e-06 55.5 44 61.4


User provided reference genes

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