Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu001370.1 Olea europaea HOM05D006307 ORTHO05D008123 5.0e-52 207.6 113 100.0
FvH4_7g26311 Fragaria vesca HOM05D006307 ORTHO05D008123 7.3e-27 124.0 87 73.6
COL.COLO4_19496 Corchorus olitorius HOM05D006307 ORTHO05D008123 9.5e-27 123.6 117 65.8
CAN.G77.11 Capsicum annuum HOM05D006307 ORTHO05D008123 1.6e-26 122.9 115 66.1
TWI09G1245 Tripterygium wilfordii HOM05D006307 ORTHO05D008123 1.6e-26 122.9 115 58.3
FAN01G0868 Fragaria x ananassa HOM05D006307 ORTHO05D008123 2.1e-26 122.5 138 56.5
Prupe.2G267300 Prunus persica HOM05D006307 ORTHO05D008123 2.1e-26 122.5 107 66.4
Dinv21870 Davidia involucrata HOM05D006307 ORTHO05D008123 2.8e-26 122.1 117 60.7
Nitab4.5_0000103g0020 Nicotiana tabacum HOM05D006307 ORTHO05D008123 2.8e-26 122.1 117 64.1
TAR633G2235 Trochodendron aralioides HOM05D006307 ORTHO05D008123 3.6e-26 121.7 135 59.3
Ciclev10033529m.g Citrus clementina HOM05D006307 ORTHO05D008123 6.1e-26 120.9 116 66.4
Duzib114G0239 Durio zibethinus HOM05D006307 ORTHO05D008123 8.0e-26 120.6 117 65.0
RcHm_v2.0_Chr1g0372771 Rosa chinensis HOM05D006307 ORTHO05D008123 1.4e-25 119.8 87 72.4
Thecc.10G187500 Theobroma cacao HOM05D006307 ORTHO05D008123 1.4e-25 119.8 117 64.1
MD01G1172000 Malus domestica HOM05D006307 ORTHO05D008123 5.2e-25 117.9 84 70.2
PGSC0003DMG400005260 Solanum tuberosum HOM05D006307 ORTHO05D008123 5.2e-25 117.9 115 65.2
Sopen03g025310 Solanum pennellii HOM05D006307 ORTHO05D008123 1.5e-24 116.3 117 64.1
Actinidia01018 Actinidia chinensis HOM05D006307 ORTHO05D008123 1.3e-23 113.2 119 63.0
Nitab4.5_0001493g0020 Nicotiana tabacum HOM05D006307 ORTHO05D008123 1.3e-23 113.2 115 61.7
Manes.07G141400 Manihot esculenta HOM05D006307 ORTHO05D008123 1.7e-23 112.8 122 63.9
Nn2g10220 Nelumbo nucifera HOM05D006307 ORTHO05D008123 1.7e-23 112.8 103 67.0
TWI73G0583 Tripterygium wilfordii HOM05D006307 ORTHO05D008123 1.4e-22 109.8 115 53.9
Atru.chr12.221 Acer truncatum HOM05D006307 ORTHO05D008123 2.4e-22 109.0 85 68.2
CANSAT56G1764 Cannabis sativa HOM05D006307 ORTHO05D008123 4.1e-22 108.2 109 61.5
Eucgr.G03171 Eucalyptus grandis HOM05D006307 ORTHO05D008123 1.2e-21 106.7 83 68.7
Psat2g060080 Pisum sativum HOM05D006307 ORTHO05D008123 1.6e-21 106.3 116 58.6
Gohir.A05G404900 Gossypium hirsutum HOM05D006307 ORTHO05D008123 2.3e-20 102.4 115 59.1
Gorai.012G012900 Gossypium raimondii HOM05D006307 ORTHO05D008123 3.9e-20 101.7 115 58.3
Lalb_Chr08g0239321 Lupinus albus HOM05D006307 ORTHO05D008123 3.9e-20 101.7 114 53.5
Dinv34513 Davidia involucrata HOM05D006307 ORTHO05D008123 6.6e-20 100.9 118 60.2
Potri.019G065500 Populus trichocarpa HOM05D006307 ORTHO05D008123 1.5e-19 99.8 83 66.3
Sabra19G0079000 Salix brachista HOM05D006307 ORTHO05D008123 1.5e-19 99.8 121 55.4
Ca_05544_v3 Cicer arietinum L. HOM05D006307 ORTHO05D008123 3.3e-19 98.6 118 53.4
PGR142G3034 Punica granatum HOM05D006307 ORTHO05D008123 4.3e-19 98.2 109 62.4
Gohir.D04G010800 Gossypium hirsutum HOM05D006307 ORTHO05D008123 5.6e-19 97.8 115 57.4
Cfa001179 Carpinus fangiana HOM05D006307 ORTHO05D008123 4.7e-18 94.7 118 61.9
SGA_v2.0_scaffold60G20871 Striga asiatica HOM05D006307 ORTHO05D008123 8.0e-18 94.0 85 62.4
CiPaw.01G088900 Carya illinoinensis HOM05D006307 ORTHO05D008123 1.1e-17 93.6 119 56.3
Haze_17382 Corylus avellana HOM05D006307 ORTHO05D008123 1.8e-17 92.8 120 57.5
Migut.F00561 Erythranthe guttata HOM05D006307 ORTHO05D008123 1.8e-17 92.8 83 61.4
arahy.Tifrunner.gnm1.ann1.SS94V0 Arachis hypogaea HOM05D006307 ORTHO05D008123 2.3e-17 92.4 112 50.9
arahy.Tifrunner.gnm1.ann1.78S8ZN Arachis hypogaea HOM05D006307 ORTHO05D008123 3.1e-17 92.0 123 52.0
arahy.Tifrunner.gnm1.ann1.8Y6D9P Arachis hypogaea HOM05D006307 ORTHO05D008123 3.1e-17 92.0 123 52.0
arahy.Tifrunner.gnm1.ann1.RI9J7M Arachis hypogaea HOM05D006307 ORTHO05D008123 3.1e-17 92.0 112 50.9
CSS0037764 Camellia sinensis var. sinensis HOM05D006307 ORTHO05D008123 3.1e-17 92.0 84 63.1
THA.LOC104824373 Tarenaya hassleriana HOM05D006307 ORTHO05D008123 5.2e-17 91.3 120 54.2
ECA233G0944 Erigeron canadensis HOM05D006307 ORTHO05D008123 8.9e-17 90.5 114 52.6
Glyma.06G140100 Glycine max HOM05D006307 ORTHO05D008123 8.9e-17 90.5 108 56.5
Glyma.04G224600 Glycine max HOM05D006307 ORTHO05D008123 1.2e-16 90.1 83 60.2
Phvul.009G041400 Phaseolus vulgaris HOM05D006307 ORTHO05D008123 1.2e-16 90.1 100 52.0
Glyma.14G187500 Glycine max HOM05D006307 ORTHO05D008123 2.6e-16 89.0 112 52.7
Cpa.g.sc65.81 Carica papaya HOM05D006307 ORTHO05D008123 3.4e-16 88.6 116 59.5
GSVIVG01032869001 Vitis vinifera HOM05D006307 ORTHO05D008123 4.4e-16 88.2 119 56.3
Cc02_g05030 Coffea canephora HOM05D006307 ORTHO05D008123 2.9e-15 85.5 119 54.6
Lj1g0008062 Lotus japonicus HOM05D006307 ORTHO05D008123 1.9e-14 82.8 107 52.3
Rhsim09G0187400 Rhododendron simsii HOM05D006307 ORTHO05D008123 2.4e-14 82.4 84 56.0
HanXRQChr14g0441281 Helianthus annuus HOM05D006307 ORTHO05D008123 4.1e-14 81.6 113 47.8
QL08p065320 Quercus lobata HOM05D006307 ORTHO05D008123 5.4e-14 81.3 120 53.3
TPR.G27912 Trifolium pratense HOM05D006307 ORTHO05D008123 1.2e-13 80.1 86 57.0
Phvul.008G187400 Phaseolus vulgaris HOM05D006307 ORTHO05D008123 2.0e-13 79.3 113 45.1
Ah.12g064690 Amaranthus hybridus HOM05D006307 ORTHO05D008123 3.5e-13 78.6 119 52.1
Lalb_Chr10g0102911 Lupinus albus HOM05D006307 ORTHO05D008123 3.5e-13 78.6 115 45.2
LjContig00155g0000391 Lotus japonicus HOM05D006307 ORTHO05D008123 6.0e-13 77.8 124 50.0
EL10Ac2g02693 Beta vulgaris HOM05D006307 ORTHO05D008123 1.0e-12 77.0 111 55.9
DCAR_018052 Daucus carota HOM05D006307 ORTHO05D009387 2.3e-12 75.9 138 44.2
Ah.10g029650 Amaranthus hybridus HOM05D006307 ORTHO05D008123 3.0e-12 75.5 135 48.9
Medtr3g093560 Medicago truncatula HOM05D006307 ORTHO05D008123 3.0e-12 75.5 99 48.5
vmacro09945 Vaccinium macrocarpon HOM05D006307 ORTHO05D008123 3.0e-12 75.5 93 50.5
VMungo1309G1947 Vigna mungo HOM05D006307 ORTHO05D008123 3.9e-12 75.1 83 53.0
Medtr5g068540 Medicago truncatula HOM05D000512 ORTHO05D000861 1.5e-11 73.2 117 48.7
Ca_16847_v3 Cicer arietinum L. HOM05D006307 ORTHO05D008123 4.3e-11 71.6 93 47.3
TPR.G13964 Trifolium pratense HOM05D006307 ORTHO05D008123 5.6e-11 71.2 90 48.9
Glyma.02G220300 Glycine max HOM05D006307 ORTHO05D008123 9.5e-11 70.5 119 48.7
CDE04G1875 Ceratophyllum demersum HOM05D006307 ORTHO05D008123 1.6e-10 69.7 104 46.2
Medtr5g068530 Medicago truncatula HOM05D006307 ORTHO05D008123 2.8e-10 68.9 108 45.4
Lsat_1_v5_gn_8_11140 Lactuca sativa HOM05D006307 ORTHO05D008123 8.1e-10 67.4 120 48.3
Cpa.g.sc65.83 Carica papaya HOM05D006307 ORTHO05D008123 1.8e-09 66.2 93 49.5
Psat5g070080 Pisum sativum HOM05D006307 ORTHO05D008123 5.2e-09 64.7 81 49.4
MSTRG.27248 Avicennia marina HOM05D006307 ORTHO05D008123 8.9e-09 63.9 123 46.3
AL4G38760 Arabidopsis lyrata HOM05D006307 ORTHO05D008123 3.4e-08 62.0 86 44.2
AUR62032552 Chenopodium quinoa HOM05D006307 ORTHO05D008123 4.4e-08 61.6 82 47.6
PSO384G0230 Papaver somniferum HOM05D006307 ORTHO05D008123 9.9e-08 60.5 81 45.7
Carub.0004s2313 Capsella rubella HOM05D006307 ORTHO05D008123 1.7e-07 59.7 89 43.8
VMungo0647G2347 Vigna mungo HOM05D006307 ORTHO05D008123 1.7e-07 59.7 114 37.7
Os01g0818100 Oryza sativa ssp. japonica HOM05D006307 ORTHO05D008123 2.2e-07 59.3 113 38.1
Zm00001eb149710 Zea mays HOM05D006307 ORTHO05D008123 4.9e-07 58.2 117 38.5
Sc11g0006110 Simmondsia chinensis HOM05D006307 ORTHO05D008123 8.3e-07 57.4 124 42.7
PSO339G5993 Papaver somniferum HOM05D006307 ORTHO05D008123 1.1e-06 57.0 81 45.7
Thhalv10016922m.g Eutrema salsugineum HOM05D006307 ORTHO05D008123 2.4e-06 55.8 120 41.7


User provided reference genes

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