Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu000547.3 Olea europaea HOM05D005760 ORTHO05D007113 0.0e+00 2248.4 1142 100.0
MSTRG.25441 Avicennia marina HOM05D005760 ORTHO05D007113 0.0e+00 1444.9 1149 66.8
Migut.C01256 Erythranthe guttata HOM05D005760 ORTHO05D007113 0.0e+00 1406.0 1134 65.8
SalBow7G4130 Salvia bowleyana HOM05D005760 ORTHO05D007113 0.0e+00 1401.0 1159 65.1
Dinv41715 Davidia involucrata HOM05D005760 ORTHO05D007113 0.0e+00 1390.6 1174 63.5
Actinidia23335 Actinidia chinensis HOM05D005760 ORTHO05D007113 0.0e+00 1330.5 1183 60.1
SGA_v2.0_scaffold118G32485 Striga asiatica HOM05D005760 ORTHO05D007113 0.0e+00 1318.9 1136 63.6
Cc10_g10700 Coffea canephora HOM05D005760 ORTHO05D007113 0.0e+00 1306.6 1150 61.2
Lj4C503G3 Lonicera japonica HOM05D005760 ORTHO05D007113 0.0e+00 1291.2 1161 61.0
QL02p033685 Quercus lobata HOM05D005760 ORTHO05D007113 0.0e+00 1290.8 1167 60.2
GSVIVG01034473001 Vitis vinifera HOM05D005760 ORTHO05D007113 0.0e+00 1287.7 1102 63.1
CSS0014231 Camellia sinensis var. sinensis HOM05D005760 ORTHO05D007113 0.0e+00 1281.5 1123 61.4
Cfa013846 Carpinus fangiana HOM05D005760 ORTHO05D007113 0.0e+00 1268.1 1176 59.3
Haze_22520 Corylus avellana HOM05D005760 ORTHO05D007113 0.0e+00 1265.8 1177 58.7
Rhsim06G0094000 Rhododendron simsii HOM05D005760 ORTHO05D007113 0.0e+00 1263.4 1155 59.4
Thecc.08G184000 Theobroma cacao HOM05D005760 ORTHO05D007113 0.0e+00 1258.0 1164 59.1
Ciclev10000028m.g Citrus clementina HOM05D005760 ORTHO05D007113 0.0e+00 1254.2 1176 58.2
TAR628G1581 Trochodendron aralioides HOM05D005760 ORTHO05D007113 0.0e+00 1251.5 1177 58.5
Atru.chr13.1758 Acer truncatum HOM05D005760 ORTHO05D007113 0.0e+00 1251.1 1136 60.1
Hma1.2p1_0004F.1_g004045 Hydrangea macrophylla HOM05D005760 ORTHO05D007113 0.0e+00 1246.5 1217 58.8
COL.COLO4_04233 Corchorus olitorius HOM05D005760 ORTHO05D007113 0.0e+00 1240.3 1180 58.6
Sabra19G0094600 Salix brachista HOM05D005760 ORTHO05D007113 0.0e+00 1230.3 1148 58.6
Manes.18G101200 Manihot esculenta HOM05D005760 ORTHO05D007113 0.0e+00 1223.8 1182 57.7
CAN.G199.9 Capsicum annuum HOM05D005760 ORTHO05D007113 0.0e+00 1217.2 1156 58.1
CiPaw.08G058900 Carya illinoinensis HOM05D005760 ORTHO05D007113 0.0e+00 1213.0 1175 58.1
CANSAT78G0610 Cannabis sativa HOM05D005760 ORTHO05D007113 0.0e+00 1211.8 1176 56.6
Prupe.8G057200 Prunus persica HOM05D005760 ORTHO05D007113 0.0e+00 1211.8 1166 58.0
Sopen06g023840 Solanum pennellii HOM05D005760 ORTHO05D007113 0.0e+00 1210.7 1162 57.9
Gohir.D05G253200 Gossypium hirsutum HOM05D005760 ORTHO05D007113 0.0e+00 1207.2 1178 57.0
Nitab4.5_0000303g0150 Nicotiana tabacum HOM05D005760 ORTHO05D007113 0.0e+00 1206.8 1185 57.5
Gorai.009G263800 Gossypium raimondii HOM05D005760 ORTHO05D007113 0.0e+00 1202.2 1171 56.9
Lj5g0008525 Lotus japonicus HOM05D005760 ORTHO05D007113 0.0e+00 1198.0 1168 56.6
Phvul.007G245600 Phaseolus vulgaris HOM05D005760 ORTHO05D007113 0.0e+00 1192.6 1170 56.9
Nn1g08372 Nelumbo nucifera HOM05D005760 ORTHO05D007113 0.0e+00 1190.3 1184 56.7
MD10G1047900 Malus domestica HOM05D005760 ORTHO05D007113 0.0e+00 1189.1 1174 57.4
vmacro12489 Vaccinium macrocarpon HOM05D005760 ORTHO05D007113 0.0e+00 1188.3 1135 57.1
DCAR_001048 Daucus carota HOM05D005760 ORTHO05D007113 0.0e+00 1184.9 1149 57.2
arahy.Tifrunner.gnm1.ann1.BNJ0D6 Arachis hypogaea HOM05D005760 ORTHO05D007113 0.0e+00 1184.1 1188 55.8
arahy.Tifrunner.gnm1.ann1.H1JXTH Arachis hypogaea HOM05D005760 ORTHO05D007113 0.0e+00 1182.9 1188 55.3
Glyma.02G158100 Glycine max HOM05D005760 ORTHO05D007113 0.0e+00 1178.3 1170 56.2
PGR102G0553 Punica granatum HOM05D005760 ORTHO05D007113 0.0e+00 1171.4 1167 55.2
RcHm_v2.0_Chr6g0272031 Rosa chinensis HOM05D005760 ORTHO05D007113 0.0e+00 1167.5 1153 55.9
CsaV3_2G033490 Cucumis sativus L. HOM05D005760 ORTHO05D007113 0.0e+00 1164.4 1180 54.8
MELO3C008121.2 Cucumis melo HOM05D005760 ORTHO05D007113 0.0e+00 1164.1 1343 50.6
Psat6g094080 Pisum sativum HOM05D005760 ORTHO05D007113 0.0e+00 1163.3 1166 55.7
Ca_11749_v3 Cicer arietinum L. HOM05D005760 ORTHO05D007113 0.0e+00 1162.1 1173 54.7
MD05G1041500 Malus domestica HOM05D005760 ORTHO05D007113 0.0e+00 1161.4 1176 55.9
TWI34G1956 Tripterygium wilfordii HOM05D005760 ORTHO05D007113 0.0e+00 1157.1 1183 54.3
ClCG11G008140 Citrullus lanatus HOM05D005760 ORTHO05D007113 0.0e+00 1156.0 1178 54.8
Duzib116G0663 Durio zibethinus HOM05D005760 ORTHO05D007113 0.0e+00 1142.9 1131 55.6
Hund27088 Selenicereus undatus HOM05D005760 ORTHO05D007113 0.0e+00 1126.3 1186 54.0
Sc23g0001270 Simmondsia chinensis HOM05D005760 ORTHO05D007113 0.0e+00 1124.8 1165 54.2
Aqoxy6G00127 Aquilegia oxysepala HOM05D005760 ORTHO05D007113 0.0e+00 1124.4 1170 54.1
AUR62004640 Chenopodium quinoa HOM05D005760 ORTHO05D007113 0.0e+00 1120.9 1177 54.1
EL10Ac1g00088 Beta vulgaris HOM05D005760 ORTHO05D007113 0.0e+00 1115.9 1172 53.3
PSO170G3854 Papaver somniferum HOM05D005760 ORTHO05D007113 0.0e+00 1115.9 1160 54.4
FAN15G1969 Fragaria x ananassa HOM05D005760 ORTHO05D007113 0.0e+00 1115.5 1137 55.9
Medtr1g050670 Medicago truncatula HOM05D005760 ORTHO05D007113 0.0e+00 1113.2 1169 53.0
THA.LOC104806788 Tarenaya hassleriana HOM05D005760 ORTHO05D007113 0.0e+00 1112.8 1157 55.1
TPR.G22709 Trifolium pratense HOM05D005760 ORTHO05D007113 0.0e+00 1108.6 1242 51.8
FvH4_2g11773 Fragaria vesca HOM05D005760 ORTHO05D007113 0.0e+00 1107.4 1150 54.9
PSO782G3241 Papaver somniferum HOM05D005760 ORTHO05D007113 0.0e+00 1106.3 1149 55.1
Nitab4.5_0002500g0010 Nicotiana tabacum HOM05D005760 ORTHO05D007113 0.0e+00 1104.0 1104 56.1
FAN24G1577 Fragaria x ananassa HOM05D005760 ORTHO05D007113 0.0e+00 1093.6 1175 53.8
Lsat_1_v5_gn_1_10440 Lactuca sativa HOM05D005760 ORTHO05D007113 9.4e-311 1070.5 1095 55.7
Potri.019G083100 Populus trichocarpa HOM05D005760 ORTHO05D007113 2.9e-309 1065.4 1076 55.9
Aa31LG6G8840 Aethionema arabicum HOM05D005760 ORTHO05D007113 4.2e-308 1061.6 1122 53.8
AL1G50540 Arabidopsis lyrata HOM05D005760 ORTHO05D007113 2.6e-305 1052.4 1137 54.4
CARHR034440 Cardamine hirsuta HOM05D005760 ORTHO05D007113 7.5e-305 1050.8 1128 55.1
AUR62022696 Chenopodium quinoa HOM05D005760 ORTHO05D007113 7.5e-305 1050.8 1177 51.6
Thhalv10001809m.g Eutrema salsugineum HOM05D005760 ORTHO05D007113 8.3e-304 1047.3 1135 53.7
Hma1.2p1_0004F.1_g004050 Hydrangea macrophylla HOM05D005760 ORTHO05D007113 6.5e-301 1037.7 973 60.1
ECA152G0004 Erigeron canadensis HOM05D005760 ORTHO05D007113 9.5e-300 1033.9 1109 53.9
Ah.05g178160 Amaranthus hybridus HOM05D005760 ORTHO05D007113 1.6e-299 1033.1 1182 51.1
ATR0003G012 Amborella trichopoda HOM05D005760 ORTHO05D007113 6.1e-299 1031.2 1172 50.3
Carub.0001s3325 Capsella rubella HOM05D005760 ORTHO05D007113 8.8e-298 1027.3 1145 53.0
AT1G35660 Arabidopsis thaliana HOM05D005760 ORTHO05D007113 1.5e-297 1026.5 1131 53.8
Sp1g30370 Schrenkiella parvula HOM05D005760 ORTHO05D007113 9.8e-297 1023.8 1137 52.7
VMungo0720G1167 Vigna mungo HOM05D005760 ORTHO05D007113 1.2e-294 1016.9 1072 54.4
Lj4C496G3 Lonicera japonica HOM05D005760 ORTHO05D007113 1.5e-292 1010.0 812 65.0
BcaB07g33624 Brassica carinata HOM05D005760 ORTHO05D007113 8.0e-291 1004.2 1114 52.9
HanXRQChr04g0107521 Helianthus annuus HOM05D005760 ORTHO05D007113 5.2e-290 1001.5 1087 53.2
BraA06t23439Z Brassica rapa HOM05D005760 ORTHO05D007113 2.0e-289 999.6 1109 52.5
A06p02320 Brassica napus HOM05D005760 ORTHO05D007113 4.4e-289 998.4 1108 52.4
BcaC08g43328 Brassica carinata HOM05D005760 ORTHO05D007113 4.9e-288 995.0 1109 52.7
BolC6t35790H Brassica oleracea HOM05D005760 ORTHO05D007113 1.1e-287 993.8 1111 52.5
C06p06840 Brassica napus HOM05D005760 ORTHO05D007113 4.1e-287 991.9 1111 52.4
Os01g0873800 Oryza sativa ssp. japonica HOM05D005760 ORTHO05D007113 3.1e-282 975.7 1142 49.1
Zm00001eb146280 Zea mays HOM05D005760 ORTHO05D007113 3.4e-273 945.7 1146 48.5
Solyc06g065360.3 Solanum lycopersicum HOM05D005760 ORTHO05D007113 3.7e-272 942.2 931 56.4
SpUn0216_0010 Schrenkiella parvula HOM05D005760 ORTHO05D007113 9.9e-265 917.5 1137 49.3
SEGI_03904 Sequoiadendron giganteum HOM05D005760 ORTHO05D007113 1.2e-254 884.0 1166 45.4
Gohir.A05G250600 Gossypium hirsutum HOM05D005760 ORTHO05D007113 3.4e-249 865.9 889 54.7
SHI09011 Sapria himalayana HOM05D005760 ORTHO05D007113 7.4e-236 821.6 1031 46.8
Sed0013995 Sechium edule HOM05D005760 ORTHO05D007113 2.1e-230 803.5 902 51.0
unitig_0.g276 Utricularia gibba HOM05D005760 ORTHO05D007113 3.5e-201 706.4 730 54.2
Lalb_Chr03g0036151 Lupinus albus HOM05D005760 ORTHO05D007113 3.8e-192 676.4 840 48.1
Mapoly0036s0148 Marchantia polymorpha HOM05D005760 ORTHO05D007113 1.4e-189 667.9 1146 38.4
Pp3c15_6360 Physcomitrium patens HOM05D005760 ORTHO05D007113 4.0e-189 666.4 1127 38.5
Pp3c15_6380 Physcomitrium patens HOM05D005760 ORTHO05D007113 4.0e-189 666.4 1127 38.5
Peaxi162Scf00268g01123 Petunia axillaris HOM05D005760 ORTHO05D007113 4.7e-182 642.9 719 52.4
Eucgr.F04123 Eucalyptus grandis HOM05D005760 ORTHO05D007113 1.7e-179 634.4 855 46.1
Peaxi162Scf00268g01128 Petunia axillaris HOM05D005760 ORTHO05D007113 2.1e-174 617.5 435 71.3
AagrBONN_evm.TU.Sc2ySwM_117.2253 Anthoceros agrestis HOM05D005760 ORTHO05D007113 7.5e-164 582.4 1186 34.2
CDE08G1571 Ceratophyllum demersum HOM05D005760 ORTHO05D007113 1.6e-137 495.0 837 39.4
Lalb_Chr03g0036141 Lupinus albus HOM05D005760 ORTHO05D007113 1.4e-130 471.9 346 67.1
Cpa.g.sc66.38 Carica papaya HOM05D005760 ORTHO05D007113 1.5e-124 451.8 499 51.9
CBR_g40969 Chara braunii HOM05D005760 ORTHO05D007113 5.1e-120 436.8 1511 27.7
SEGI_16135 Sequoiadendron giganteum HOM05D005760 ORTHO05D007113 6.1e-105 386.7 344 59.3
Carub.0001s0936 Capsella rubella HOM05D005760 ORTHO05D007113 5.7e-87 327.0 892 31.2
unitig_0.g275 Utricularia gibba HOM05D005760 ORTHO05D007113 1.3e-86 325.9 374 52.7
QL02p033674 Quercus lobata HOM05D005760 ORTHO05D007113 3.8e-83 314.3 440 45.7
Cpa.g.sc66.39 Carica papaya HOM05D005760 ORTHO05D007113 2.4e-69 268.5 390 44.4
Lj4A496G12 Lonicera japonica HOM05D005760 ORTHO05D007113 3.8e-67 261.2 241 60.2
QL02p033652 Quercus lobata HOM05D005760 ORTHO05D007113 7.0e-61 240.4 646 33.4
AL1G47130 Arabidopsis lyrata HOM05D005760 ORTHO05D007113 3.3e-58 231.5 860 27.3
Gohir.A05G250551 Gossypium hirsutum HOM05D005760 ORTHO05D007113 5.0e-51 207.6 130 77.7
C06p06800 Brassica napus HOM05D005760 ORTHO05D007113 3.9e-43 181.4 159 60.4
BolC6t35788H Brassica oleracea HOM05D005760 ORTHO05D007113 5.1e-27 127.9 140 57.1
SHI09012 Sapria himalayana HOM05D005760 ORTHO05D007113 7.9e-20 104.0 68 72.1
FAN02G3326 Fragaria x ananassa HOM05D005760 ORTHO05D007113 8.7e-19 100.5 60 78.3
ATR1101G015 Amborella trichopoda HOM05D005760 ORTHO05D007113 1.9e-18 99.4 65 67.7
HPP92_025156 Vanilla planifolia HOM05D005760 ORTHO05D007113 9.9e-15 87.0 59 72.9
CDE08G0174 Ceratophyllum demersum HOM05D003774 ORTHO05D009174 1.3e-14 86.7 113 46.0
Hma1.2p1_0004F.1_g004060 Hydrangea macrophylla HOM05D005760 ORTHO05D007113 2.6e-07 62.4 55 61.8


User provided reference genes

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