Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu000523.1 Olea europaea HOM05D005237 ORTHO05D006189 3.2e-98 361.7 175 100.0
Actinidia07336 Actinidia chinensis HOM05D005237 ORTHO05D006189 1.4e-93 346.3 175 94.3
Duzib150G0783 Durio zibethinus HOM05D005237 ORTHO05D006189 1.5e-92 342.8 175 93.1
vmacro07739 Vaccinium macrocarpon HOM05D005237 ORTHO05D006189 1.5e-92 342.8 174 93.1
Ciclev10009685m.g Citrus clementina HOM05D005237 ORTHO05D006189 2.6e-92 342.0 175 93.1
Dinv41456 Davidia involucrata HOM05D005237 ORTHO05D006189 2.6e-92 342.0 175 93.1
CiPaw.03G250600 Carya illinoinensis HOM05D005237 ORTHO05D006189 1.3e-91 339.7 175 91.4
GSVIVG01012837001 Vitis vinifera HOM05D005237 ORTHO05D006189 1.3e-91 339.7 175 92.6
Rhsim01G0059600 Rhododendron simsii HOM05D005237 ORTHO05D006189 1.7e-91 339.3 175 91.4
QL02p090325 Quercus lobata HOM05D005237 ORTHO05D006189 2.9e-91 338.6 174 92.5
Eucgr.C04376 Eucalyptus grandis HOM05D005237 ORTHO05D006189 3.8e-91 338.2 175 91.4
Lalb_Chr13g0301391 Lupinus albus HOM05D005237 ORTHO05D006189 5.0e-91 337.8 175 90.3
Prupe.7G251500 Prunus persica HOM05D005237 ORTHO05D006189 5.0e-91 337.8 174 91.4
Lalb_Chr12g0198311 Lupinus albus HOM05D005237 ORTHO05D006189 6.5e-91 337.4 175 90.9
EL10Ac8g18779 Beta vulgaris HOM05D005237 ORTHO05D006189 8.4e-91 337.0 172 91.3
Glyma.17G108800 Glycine max HOM05D005237 ORTHO05D006189 8.4e-91 337.0 175 90.3
Lj7A437T44 Lonicera japonica HOM05D005237 ORTHO05D006189 8.4e-91 337.0 173 91.9
TWI32G1192 Tripterygium wilfordii HOM05D005237 ORTHO05D006189 8.4e-91 337.0 175 90.3
MD02G1020300 Malus domestica HOM05D005237 ORTHO05D006189 1.1e-90 336.7 174 90.8
MD15G1163100 Malus domestica HOM05D005237 ORTHO05D006189 1.4e-90 336.3 174 90.8
Gohir.A08G089300 Gossypium hirsutum HOM05D005237 ORTHO05D006189 3.2e-90 335.1 175 90.3
SGA_v2.0_scaffold37G14721 Striga asiatica HOM05D005237 ORTHO05D006189 3.2e-90 335.1 175 92.0
Nn8g40617 Nelumbo nucifera HOM05D005237 ORTHO05D006189 5.5e-90 334.3 172 90.1
Potri.018G123100 Populus trichocarpa HOM05D005237 ORTHO05D006189 5.5e-90 334.3 172 91.3
Glyma.13G162500 Glycine max HOM05D005237 ORTHO05D006189 7.1e-90 334.0 175 89.7
Lj4g0017742 Lotus japonicus HOM05D005237 ORTHO05D006189 7.1e-90 334.0 175 90.3
Medtr4g115900 Medicago truncatula HOM05D005237 ORTHO05D006189 7.1e-90 334.0 172 90.7
Psat0s3428g0040 Pisum sativum HOM05D005237 ORTHO05D006189 7.1e-90 334.0 172 90.1
AT1G60430 Arabidopsis thaliana HOM05D005237 ORTHO05D006189 9.3e-90 333.6 173 89.6
CsaV3_2G003270 Cucumis sativus L. HOM05D005237 ORTHO05D006189 9.3e-90 333.6 175 89.7
FvH4_3g33280 Fragaria vesca HOM05D005237 ORTHO05D006189 9.3e-90 333.6 174 92.0
FAN11G2421 Fragaria x ananassa HOM05D005237 ORTHO05D006189 9.3e-90 333.6 174 92.0
Cpa.g.sc277.15 Carica papaya HOM05D005237 ORTHO05D006189 1.2e-89 333.2 175 90.3
Peaxi162Scf00088g00918 Petunia axillaris HOM05D005237 ORTHO05D006189 1.2e-89 333.2 174 89.7
ClCG11G003410 Citrullus lanatus HOM05D005237 ORTHO05D006189 1.6e-89 332.8 175 89.7
Haze_25466 Corylus avellana HOM05D005237 ORTHO05D006189 1.6e-89 332.8 175 90.3
Haze_25470 Corylus avellana HOM05D005237 ORTHO05D006189 1.6e-89 332.8 175 90.3
unitig_748.g7174 Utricularia gibba HOM05D005237 ORTHO05D006189 2.1e-89 332.4 174 90.8
Sabra18G0104800 Salix brachista HOM05D005237 ORTHO05D006189 2.7e-89 332.0 172 90.7
Migut.K00410 Erythranthe guttata HOM05D005237 ORTHO05D006189 3.5e-89 331.6 172 91.9
Carub.0002s0491 Capsella rubella HOM05D005237 ORTHO05D006189 4.6e-89 331.3 173 89.0
CARHR052620 Cardamine hirsuta HOM05D005237 ORTHO05D006189 6.1e-89 330.9 173 89.0
FAN21G0596 Fragaria x ananassa HOM05D005237 ORTHO05D006189 6.1e-89 330.9 174 91.4
Gorai.004G108300 Gossypium raimondii HOM05D005237 ORTHO05D006189 6.1e-89 330.9 174 90.2
PGR102G2022 Punica granatum HOM05D005237 ORTHO05D006189 6.1e-89 330.9 172 91.9
Nitab4.5_0002267g0030 Nicotiana tabacum HOM05D005237 ORTHO05D006189 7.9e-89 330.5 175 89.1
PGSC0003DMG400030712 Solanum tuberosum HOM05D005237 ORTHO05D006189 7.9e-89 330.5 175 88.6
Phvul.003G171200 Phaseolus vulgaris HOM05D005237 ORTHO05D006189 1.0e-88 330.1 175 89.1
AL2G16270 Arabidopsis lyrata HOM05D005237 ORTHO05D006189 1.3e-88 329.7 173 88.4
SalBow1G1295 Salvia bowleyana HOM05D005237 ORTHO05D006189 1.3e-88 329.7 175 90.3
Sed0005481 Sechium edule HOM05D005237 ORTHO05D006189 1.3e-88 329.7 175 89.1
Aa31LG2G10030 Aethionema arabicum HOM05D005237 ORTHO05D006189 1.8e-88 329.3 173 88.4
Thhalv10023668m.g Eutrema salsugineum HOM05D005237 ORTHO05D006189 2.3e-88 328.9 172 89.0
Manes.14G117900 Manihot esculenta HOM05D005237 ORTHO05D006189 3.0e-88 328.6 172 89.0
Hund09300 Selenicereus undatus HOM05D005237 ORTHO05D006189 3.0e-88 328.6 172 89.5
Solyc07g007630.3 Solanum lycopersicum HOM05D005237 ORTHO05D006189 3.0e-88 328.6 175 88.0
HPP92_021894 Vanilla planifolia HOM05D005237 ORTHO05D006189 3.0e-88 328.6 173 89.0
Atru.chr7.1980 Acer truncatum HOM05D005237 ORTHO05D006189 3.9e-88 328.2 174 89.7
Sopen07g003620 Solanum pennellii HOM05D005237 ORTHO05D006189 3.9e-88 328.2 175 87.4
Aqoxy7G00028 Aquilegia oxysepala HOM05D005237 ORTHO05D006189 6.7e-88 327.4 175 88.0
CDE07G1573 Ceratophyllum demersum HOM05D005237 ORTHO05D006189 6.7e-88 327.4 174 87.9
DCAR_009333 Daucus carota HOM05D005237 ORTHO05D006189 6.7e-88 327.4 171 90.1
Sp2g04330 Schrenkiella parvula HOM05D005237 ORTHO05D006189 6.7e-88 327.4 172 88.4
arahy.Tifrunner.gnm1.ann1.E2H6AC Arachis hypogaea HOM05D005237 ORTHO05D006189 1.1e-87 326.6 175 88.0
MSTRG.26338 Avicennia marina HOM05D005237 ORTHO05D006189 1.1e-87 326.6 175 89.7
ECA236G1442 Erigeron canadensis HOM05D005237 ORTHO05D006189 1.5e-87 326.2 172 88.4
Hma1.2p1_0343F.1_g130850 Hydrangea macrophylla HOM05D005237 ORTHO05D006189 2.5e-87 325.5 173 88.4
CANSAT11G1632 Cannabis sativa HOM05D005237 ORTHO05D006189 4.3e-87 324.7 175 86.9
Lsat_1_v5_gn_8_61340 Lactuca sativa HOM05D005237 ORTHO05D006189 4.3e-87 324.7 172 86.6
BcaB07g31213 Brassica carinata HOM05D005237 ORTHO05D006189 5.7e-87 324.3 173 86.7
BcaC04g22225 Brassica carinata HOM05D005237 ORTHO05D006189 5.7e-87 324.3 173 86.7
Sed0006539 Sechium edule HOM05D005237 ORTHO05D006189 5.7e-87 324.3 175 86.9
THA.LOC104815299 Tarenaya hassleriana HOM05D005237 ORTHO05D006189 7.4e-87 323.9 171 87.7
CSS0004544 Camellia sinensis var. sinensis HOM05D005237 ORTHO05D006189 9.7e-87 323.6 226 73.0
HanXRQChr06g0180531 Helianthus annuus HOM05D005237 ORTHO05D006189 9.7e-87 323.6 172 86.6
Potri.006G063400 Populus trichocarpa HOM05D005237 ORTHO05D006189 9.7e-87 323.6 172 89.5
C09p21860 Brassica napus HOM05D002152 ORTHO05D006189 2.2e-86 322.4 172 86.6
BraA09t37380Z Brassica rapa HOM05D002152 ORTHO05D006189 2.2e-86 322.4 172 86.6
Sc18g0000220 Simmondsia chinensis HOM05D005237 ORTHO05D006189 3.7e-86 321.6 172 87.2
A09p17560 Brassica napus HOM05D002152 ORTHO05D006189 4.8e-86 321.2 172 86.0
Ah.09g224420 Amaranthus hybridus HOM05D005237 ORTHO05D006189 8.2e-86 320.5 172 87.2
RcHm_v2.0_Chr5g0060671 Rosa chinensis HOM05D005237 ORTHO05D006189 3.1e-85 318.5 174 86.8
Nitab4.5_0000704g0070 Nicotiana tabacum HOM05D005237 ORTHO05D006189 4.1e-85 318.2 190 81.6
CiPaw.04G176700 Carya illinoinensis HOM05D005237 ORTHO05D006189 6.9e-85 317.4 175 86.3
Cc07_g18400 Coffea canephora HOM05D005237 ORTHO05D006189 2.6e-84 315.5 175 86.9
SEGI_28631 Sequoiadendron giganteum HOM05D005237 ORTHO05D006189 1.3e-83 313.2 172 84.3
Zm00001eb238940 Zea mays HOM05D005237 ORTHO05D006189 3.8e-83 311.6 173 83.2
Zm00001eb238960 Zea mays HOM05D005237 ORTHO05D006189 3.8e-83 311.6 172 83.7
Zm00001eb238970 Zea mays HOM05D005237 ORTHO05D006189 3.8e-83 311.6 172 83.7
Zm00001eb438640 Zea mays HOM05D005237 ORTHO05D006189 3.8e-83 311.6 172 83.7
Zm00001eb438650 Zea mays HOM05D005237 ORTHO05D006189 3.8e-83 311.6 172 83.7
Zm00001eb150940 Zea mays HOM05D005237 ORTHO05D006189 5.5e-82 307.8 172 83.1
Dinv36460 Davidia involucrata HOM05D005237 ORTHO05D006189 1.2e-81 306.6 159 90.6
Gohir.D05G014800 Gossypium hirsutum HOM05D005237 ORTHO05D006189 1.6e-81 306.2 171 83.0
MBI14_g10734_MAGBIO Magnolia biondii HOM05D005237 ORTHO05D006189 1.6e-81 306.2 181 82.9
Gohir.A05G013700 Gossypium hirsutum HOM05D005237 ORTHO05D006189 3.6e-81 305.1 171 82.5
Gorai.009G014900 Gossypium raimondii HOM05D005237 ORTHO05D006189 5.1e-80 301.2 173 82.1
SHI03217 Sapria himalayana HOM05D005237 ORTHO05D006189 5.1e-80 301.2 165 84.2
Gohir.D08G100500 Gossypium hirsutum HOM05D005237 ORTHO05D006189 2.8e-78 295.4 158 89.9
ATR0580G166 Amborella trichopoda HOM05D005237 ORTHO05D006189 1.4e-72 276.6 149 89.3
CDE04G0420 Ceratophyllum demersum HOM05D005237 ORTHO05D006189 5.1e-72 274.6 151 86.1
BolC9t55091H Brassica oleracea HOM05D002152 ORTHO05D002737 9.7e-71 270.4 146 87.7
SMO356G0108 Selaginella moellendorffii HOM05D005237 ORTHO05D006189 1.4e-69 266.5 174 69.0
Mapoly0002s0013 Marchantia polymorpha HOM05D005237 ORTHO05D006189 7.0e-69 264.2 176 70.5
Pp3c3_23320 Physcomitrium patens HOM05D005237 ORTHO05D006189 7.0e-69 264.2 174 67.2
Pp3c10_12220 Physcomitrium patens HOM05D005237 ORTHO05D006189 7.7e-68 260.8 174 66.7
MELO3C004473.2 Cucumis melo HOM05D005237 ORTHO05D006189 2.2e-67 259.2 138 89.9
PSO675G7544 Papaver somniferum HOM05D005237 ORTHO05D006189 9.4e-66 253.8 147 83.7
VMungo1215G1009 Vigna mungo HOM05D005237 ORTHO05D006189 3.3e-63 245.4 182 68.1
Thecc.09G135400 Theobroma cacao HOM05D005237 ORTHO05D006189 1.3e-62 243.4 172 72.1
COL.COLO4_15552 Corchorus olitorius HOM05D005237 ORTHO05D006189 1.7e-62 243.0 126 92.1
AUR62011203 Chenopodium quinoa HOM05D005237 ORTHO05D006189 8.2e-62 240.7 130 86.2
AUR62013284 Chenopodium quinoa HOM05D005237 ORTHO05D006189 8.2e-62 240.7 130 86.2
CAN.G1382.4 Capsicum annuum HOM05D005237 ORTHO05D006189 1.8e-61 239.6 127 88.2
Zm00001eb238980 Zea mays HOM05D005237 ORTHO05D006189 2.4e-61 239.2 133 85.0
TPR.G39824 Trifolium pratense HOM05D005237 ORTHO05D006189 4.1e-61 238.4 127 86.6
TAR626G0602 Trochodendron aralioides HOM05D005237 ORTHO05D006189 4.1e-61 238.4 134 85.8
Lsat_1_v5_gn_7_44340 Lactuca sativa HOM05D005237 ORTHO05D006189 5.3e-61 238.0 176 63.6
Duzib187G1805 Durio zibethinus HOM05D005237 ORTHO05D006189 3.5e-60 235.3 130 86.2
TWI38G2392 Tripterygium wilfordii HOM05D005237 ORTHO05D006189 7.7e-60 234.2 128 85.2
Os02g0235000 Oryza sativa ssp. japonica HOM05D005237 ORTHO05D006189 1.9e-58 229.6 127 83.5
FAN25G0883 Fragaria x ananassa HOM05D005237 ORTHO05D006189 1.2e-57 226.9 163 72.4
MD10G1159100 Malus domestica HOM05D005237 ORTHO05D006189 2.1e-57 226.1 129 82.2
VMungo0251G3112 Vigna mungo HOM05D005237 ORTHO05D006189 2.2e-51 206.1 147 73.5
Sopen02g003910 Solanum pennellii HOM05D005237 ORTHO05D006189 4.2e-50 201.8 132 72.7
Peaxi162Scf00113g00061 Petunia axillaris HOM05D005237 ORTHO05D006189 2.1e-49 199.5 128 76.6
Solyc02g014540.3 Solanum lycopersicum HOM05D005237 ORTHO05D006189 6.3e-46 188.0 130 68.5
Ca_21648_v3 Cicer arietinum L. HOM05D005237 ORTHO05D006189 6.6e-43 177.9 131 69.5
FAN16G0279 Fragaria x ananassa HOM05D005237 ORTHO05D006189 1.4e-40 170.2 92 89.1
Sabra06G0046100 Salix brachista HOM05D005237 ORTHO05D006189 5.7e-39 164.9 96 84.4
FAN21G3302 Fragaria x ananassa HOM05D005237 ORTHO05D006189 2.9e-38 162.5 89 88.8
FAN28G2985 Fragaria x ananassa HOM05D005237 ORTHO05D006189 1.6e-36 156.8 92 83.7
FAN17G0595 Fragaria x ananassa HOM05D005237 ORTHO05D006189 2.0e-36 156.4 95 82.1
FAN02G0796 Fragaria x ananassa HOM05D005237 ORTHO05D006189 2.7e-36 156.0 103 76.7
FAN17G0540 Fragaria x ananassa HOM05D005237 ORTHO05D006189 5.9e-36 154.8 90 85.6
Eucgr.I02126 Eucalyptus grandis HOM05D005237 ORTHO05D006189 2.9e-35 152.5 80 86.2
FAN20G0460 Fragaria x ananassa HOM05D005237 ORTHO05D006189 5.0e-35 151.8 90 81.1
PGSC0003DMG400003270 Solanum tuberosum HOM05D005237 ORTHO05D006189 1.1e-34 150.6 93 75.3
Medtr0320s0040 Medicago truncatula HOM05D005237 ORTHO05D006189 4.7e-33 145.2 88 77.3
Duzib168G1377 Durio zibethinus HOM05D005237 ORTHO05D006189 2.2e-30 136.3 75 88.0
Aa31LG9G5450 Aethionema arabicum HOM05D005237 ORTHO05D006189 4.1e-29 132.1 99 65.7
Eucgr.L01822 Eucalyptus grandis HOM05D005237 ORTHO05D006189 9.2e-29 131.0 80 78.8
FAN20G1904 Fragaria x ananassa HOM05D005237 ORTHO05D006189 1.2e-28 130.6 77 83.1
Cre09.g397950 Chlamydomonas reinhardtii HOM05D005237 ORTHO05D006189 5.0e-27 125.2 192 36.5
Zm00001eb302220 Zea mays HOM05D005237 ORTHO05D006189 8.1e-25 117.9 67 74.6
TAR625G1190 Trochodendron aralioides HOM05D005237 ORTHO05D006189 1.9e-21 106.7 90 61.1
Cc06_g07800 Coffea canephora HOM05D005237 ORTHO05D006189 3.5e-20 102.4 57 82.5
Lsat_1_v5_gn_2_45981 Lactuca sativa HOM05D005237 ORTHO05D003224 9.2e-13 77.8 39 82.1


User provided reference genes

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