Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu000424.1 Olea europaea HOM05D002995 ORTHO05D003319 4.8e-223 777.7 452 100.0
MSTRG.22561 Avicennia marina HOM05D002995 ORTHO05D003319 1.4e-73 281.2 478 47.1
SalBow6G1492 Salvia bowleyana HOM05D002995 ORTHO05D003319 1.4e-57 228.0 494 37.9
Nitab4.5_0009623g0010 Nicotiana tabacum HOM05D002995 ORTHO05D003319 4.2e-57 226.5 475 39.8
Cc04_g01580 Coffea canephora HOM05D002995 ORTHO05D003319 5.6e-54 216.1 489 37.4
Nitab4.5_0009641g0030 Nicotiana tabacum HOM05D002995 ORTHO05D003319 9.0e-52 208.8 468 40.4
Sopen03g040710 Solanum pennellii HOM05D002995 ORTHO05D003319 1.1e-49 201.8 483 36.9
Solyc03g121890.1 Solanum lycopersicum HOM05D002995 ORTHO05D003319 1.4e-49 201.4 483 36.9
CAN.G862.19 Capsicum annuum HOM05D002995 ORTHO05D003319 2.1e-48 197.6 466 39.7
Peaxi162Scf00038g00176 Petunia axillaris HOM05D002995 ORTHO05D003319 4.6e-48 196.4 485 38.4
Migut.I01054 Erythranthe guttata HOM05D002995 ORTHO05D003319 1.5e-43 181.4 541 34.8
PGSC0003DMG400002572 Solanum tuberosum HOM05D002995 ORTHO05D003319 2.7e-40 170.6 467 34.7
PGSC0003DMG400027652 Solanum tuberosum HOM05D002995 ORTHO05D003319 2.7e-40 170.6 467 34.7
SGA_v2.0_scaffold122G33351 Striga asiatica HOM05D002995 ORTHO05D003319 1.9e-38 164.5 486 36.4
FvH4_6g34220 Fragaria vesca HOM05D002995 ORTHO05D003319 2.8e-37 160.6 492 35.0
FAN05G1863 Fragaria x ananassa HOM05D002995 ORTHO05D003319 1.1e-33 148.7 486 33.1
CSS0025029 Camellia sinensis var. sinensis HOM05D002995 ORTHO05D003319 3.5e-32 143.7 289 42.2
MD09G1187300 Malus domestica HOM05D002995 ORTHO05D003319 1.0e-31 142.1 498 32.7
Prupe.3G044600 Prunus persica HOM05D002995 ORTHO05D003319 8.7e-31 139.0 501 32.1
Thecc.06G116400 Theobroma cacao HOM05D002995 ORTHO05D003319 2.1e-29 134.4 482 34.4
Lj5C40T31 Lonicera japonica HOM05D002995 ORTHO05D003319 4.8e-29 133.3 242 38.8
QL05p009417 Quercus lobata HOM05D002995 ORTHO05D003319 1.1e-28 132.1 508 34.4
Gohir.D04G009000 Gossypium hirsutum HOM05D002995 ORTHO05D003319 1.8e-28 131.3 461 29.7
Hma1.2p1_0291F.1_g115380 Hydrangea macrophylla HOM05D002995 ORTHO05D003319 4.0e-28 130.2 299 39.8
RcHm_v2.0_Chr2g0144551 Rosa chinensis HOM05D002995 ORTHO05D003319 5.3e-28 129.8 478 33.3
Gorai.012G010800 Gossypium raimondii HOM05D002995 ORTHO05D003319 1.2e-27 128.6 461 29.1
Rhsim08G0236500 Rhododendron simsii HOM05D002995 ORTHO05D003319 1.5e-27 128.3 471 34.2
Gohir.A05G406600 Gossypium hirsutum HOM05D002995 ORTHO05D003319 5.8e-27 126.3 455 29.0
Cpa.g.sc25.89 Carica papaya HOM05D002995 ORTHO05D003319 7.6e-27 125.9 303 33.7
Duzib235G1000 Durio zibethinus HOM05D002995 ORTHO05D003319 3.8e-26 123.6 480 32.5
Lsat_1_v5_gn_5_135640 Lactuca sativa HOM05D002995 ORTHO05D003319 3.8e-26 123.6 560 27.5
vmacro22222 Vaccinium macrocarpon HOM05D002995 ORTHO05D003319 2.5e-25 120.9 357 34.2
TAR413G0002 Trochodendron aralioides HOM05D002995 ORTHO05D003319 7.1e-25 119.4 493 30.8
CANSAT56G2784 Cannabis sativa HOM05D002995 ORTHO05D003319 1.6e-24 118.2 298 36.2
CiPaw.01G221600 Carya illinoinensis HOM05D002995 ORTHO05D003319 1.0e-23 115.5 519 32.9
ClCG09G000850 Citrullus lanatus HOM05D002995 ORTHO05D003319 1.3e-23 115.2 481 27.0
ECA234G1793 Erigeron canadensis HOM05D002995 ORTHO05D003319 1.8e-23 114.8 551 29.0
Lsat_1_v5_gn_4_94980 Lactuca sativa HOM05D002995 ORTHO05D003319 3.9e-23 113.6 310 30.0
Nn8g38758 Nelumbo nucifera HOM05D002995 ORTHO05D003319 8.7e-23 112.5 243 36.2
Lalb_Chr22g0351971 Lupinus albus HOM05D002995 ORTHO05D003319 1.5e-22 111.7 415 28.9
HanXRQChr10g0312311 Helianthus annuus HOM05D002995 ORTHO05D003319 1.9e-22 111.3 549 27.0
unitig_88.g27589 Utricularia gibba HOM05D002995 ORTHO05D003319 4.3e-22 110.2 463 32.6
arahy.Tifrunner.gnm1.ann1.XMQ57C Arachis hypogaea HOM05D002995 ORTHO05D003319 5.7e-22 109.8 480 28.3
Gorai.011G063000 Gossypium raimondii HOM05D002995 ORTHO05D003319 9.7e-22 109.0 288 37.8
Gohir.A10G057200 Gossypium hirsutum HOM05D002995 ORTHO05D003319 2.2e-21 107.8 290 37.9
CiPaw.02G137600 Carya illinoinensis HOM05D002995 ORTHO05D003319 8.2e-21 105.9 488 32.8
arahy.Tifrunner.gnm1.ann1.M6TAZ9 Arachis hypogaea HOM05D002995 ORTHO05D003319 1.8e-20 104.8 479 27.8
COL.COLO4_30709 Corchorus olitorius HOM05D002995 ORTHO05D003319 3.1e-20 104.0 181 41.4
Potri.001G198900 Populus trichocarpa HOM05D002995 ORTHO05D003319 1.2e-19 102.1 481 28.5
HanXRQChr09g0276641 Helianthus annuus HOM05D002995 ORTHO05D003319 2.6e-19 100.9 463 28.1
Dinv30367 Davidia involucrata HOM05D002995 ORTHO05D002742 3.4e-19 100.5 245 37.6
MELO3C024371.2 Cucumis melo HOM05D002995 ORTHO05D003319 5.0e-18 96.7 259 35.9
TWI79G0795 Tripterygium wilfordii HOM05D002995 ORTHO05D003319 8.5e-18 95.9 275 30.5
AUR62001509 Chenopodium quinoa HOM05D002995 ORTHO05D003319 1.1e-17 95.5 296 31.1
Manes.11G022900 Manihot esculenta HOM05D002995 ORTHO05D003319 1.4e-17 95.1 320 31.2
Cfa003552 Carpinus fangiana HOM05D002995 ORTHO05D003319 1.9e-17 94.7 281 37.7
AUR62009861 Chenopodium quinoa HOM05D002995 ORTHO05D003319 1.9e-17 94.7 264 33.7
Ca_01228_v3 Cicer arietinum L. HOM05D002995 ORTHO05D003319 7.2e-17 92.8 245 33.9
CsaV3_7G034620 Cucumis sativus L. HOM05D002995 ORTHO05D003319 7.2e-17 92.8 429 28.4
Glyma.15G026900 Glycine max HOM05D002995 ORTHO05D003319 7.2e-17 92.8 197 34.5
Medtr2g099520 Medicago truncatula HOM05D002995 ORTHO05D003319 9.4e-17 92.4 288 31.6
Lj3g0002362 Lotus japonicus HOM05D002995 ORTHO05D003319 1.6e-16 91.7 466 27.5
QL05p009393 Quercus lobata HOM05D002995 ORTHO05D003319 1.6e-16 91.7 452 29.9
VMungo1080G1287 Vigna mungo HOM05D002995 ORTHO05D003319 1.6e-16 91.7 296 29.4
Sc12g0010430 Simmondsia chinensis HOM05D002995 ORTHO05D003319 4.6e-16 90.1 463 24.6
Nn6g35558 Nelumbo nucifera HOM05D002995 ORTHO05D003319 1.0e-15 89.0 515 26.2
Aqoxy7G01134 Aquilegia oxysepala HOM05D002995 ORTHO05D003319 1.4e-15 88.6 241 36.1
DCAR_026400 Daucus carota HOM05D002995 ORTHO05D003319 1.8e-15 88.2 507 31.0
TPR.G6547 Trifolium pratense HOM05D002995 ORTHO05D003319 3.0e-15 87.4 208 34.1
Ciclev10025206m.g Citrus clementina HOM05D002995 ORTHO05D003319 3.9e-15 87.0 536 27.1
GSVIVG01016820001 Vitis vinifera HOM05D002995 ORTHO05D003319 3.9e-15 87.0 285 30.2
ECA232G2442 Erigeron canadensis HOM05D000426 ORTHO05D000328 8.8e-15 85.9 427 28.1
Glyma.13G347200 Glycine max HOM05D002995 ORTHO05D003319 1.5e-14 85.1 155 36.8
Lj3g0001848 Lotus japonicus HOM05D002995 ORTHO05D003319 1.5e-14 85.1 462 29.2
Sed0004132 Sechium edule HOM05D002995 ORTHO05D003319 2.0e-14 84.7 221 29.9
Psat4g184520 Pisum sativum HOM05D002995 ORTHO05D003319 2.5e-14 84.3 248 30.6
PSO063G7146 Papaver somniferum HOM05D002995 ORTHO05D003319 2.2e-13 81.3 233 32.6
Actinidia25228 Actinidia chinensis HOM05D002995 ORTHO05D003319 2.8e-13 80.9 501 26.1
Ah.08g216520 Amaranthus hybridus HOM05D002995 ORTHO05D003319 2.8e-13 80.9 229 31.4
Phvul.005G156400 Phaseolus vulgaris HOM05D002995 ORTHO05D003319 1.1e-12 79.0 157 31.8
Ca_23353_v3 Cicer arietinum L. HOM05D002995 ORTHO05D003319 2.4e-12 77.8 216 30.1
Manes.04G142400 Manihot esculenta HOM05D002995 ORTHO05D003319 2.4e-12 77.8 374 29.1
Sabra01G0156000 Salix brachista HOM05D002995 ORTHO05D003319 2.4e-12 77.8 536 28.2
PGSC0003DMG400016079 Solanum tuberosum HOM05D002995 ORTHO05D003319 2.4e-12 77.8 308 30.2
Dinv36799 Davidia involucrata HOM05D002995 ORTHO05D003319 3.1e-12 77.4 408 31.6
Phvul.010G134400 Phaseolus vulgaris HOM05D002995 ORTHO05D003319 4.1e-12 77.0 242 31.4
Eucgr.F03168 Eucalyptus grandis HOM05D002995 ORTHO05D003319 6.9e-12 76.3 198 33.3
Psat5g291120 Pisum sativum HOM05D002995 ORTHO05D003319 6.9e-12 76.3 237 32.5
Haze_25953 Corylus avellana HOM05D002995 ORTHO05D003319 9.1e-12 75.9 313 28.4
PGR119G1307 Punica granatum HOM05D002995 ORTHO05D003319 1.2e-11 75.5 454 24.9
TWI63G1002 Tripterygium wilfordii HOM05D002995 ORTHO05D003319 1.2e-11 75.5 427 27.2
EL10Ac7g16382 Beta vulgaris HOM05D002995 ORTHO05D003319 1.5e-11 75.1 229 32.8
PSO832G1389 Papaver somniferum HOM05D002995 ORTHO05D003319 1.5e-11 75.1 257 31.5
FAN09G3175 Fragaria x ananassa HOM05D002995 ORTHO05D003319 4.5e-11 73.6 317 30.6
Oeu033213.1 Olea europaea HOM05D002995 ORTHO05D003319 4.5e-11 73.6 254 29.1
Duzib150G1106 Durio zibethinus HOM05D002995 ORTHO05D003319 5.9e-11 73.2 221 31.2
VMungo0331G1268 Vigna mungo HOM05D002995 ORTHO05D003319 5.9e-11 73.2 242 29.3
Dinv42353 Davidia involucrata HOM05D002995 ORTHO05D003319 1.7e-10 71.6 249 28.9
Nitab4.5_0009954g0010 Nicotiana tabacum HOM05D002995 ORTHO05D003319 1.7e-10 71.6 284 32.4
Gohir.A05G032200 Gossypium hirsutum HOM05D002995 ORTHO05D003319 2.9e-10 70.9 232 29.3
Prupe.7G204200 Prunus persica HOM05D002995 ORTHO05D003319 2.9e-10 70.9 413 27.6
Nitab4.5_0000024g0020 Nicotiana tabacum HOM05D002995 ORTHO05D003319 3.8e-10 70.5 237 31.2
Thecc.09G082700 Theobroma cacao HOM05D002995 ORTHO05D003319 3.8e-10 70.5 299 30.4
Manes.16G098800 Manihot esculenta HOM05D002995 ORTHO05D003319 5.0e-10 70.1 367 28.1
Sopen07g020330 Solanum pennellii HOM05D002995 ORTHO05D003319 6.5e-10 69.7 318 27.4
MBI11_g07526_MAGBIO Magnolia biondii HOM05D002995 ORTHO05D003319 1.1e-09 68.9 225 32.9
Gorai.009G034000 Gossypium raimondii HOM05D002995 ORTHO05D003319 1.4e-09 68.6 232 29.3
Rhsim05G0013900 Rhododendron simsii HOM05D002995 ORTHO05D003319 2.5e-09 67.8 435 26.0
CARHR065700 Cardamine hirsuta HOM05D002995 ORTHO05D003319 3.2e-09 67.4 327 26.9
BcaB03g15682 Brassica carinata HOM05D002995 ORTHO05D003319 4.2e-09 67.0 203 32.0
ClCG03G015340 Citrullus lanatus HOM05D002995 ORTHO05D003319 5.5e-09 66.6 330 28.2
Gohir.D05G033600 Gossypium hirsutum HOM05D002995 ORTHO05D003319 5.5e-09 66.6 341 25.5
Solyc07g041070.3 Solanum lycopersicum HOM05D002995 ORTHO05D003319 7.2e-09 66.2 311 27.0
Nitab4.5_0002079g0050 Nicotiana tabacum HOM05D002995 ORTHO05D003319 9.4e-09 65.9 303 30.0
Actinidia39694 Actinidia chinensis HOM05D002995 ORTHO05D003319 1.2e-08 65.5 344 27.6
Duzib168G1660 Durio zibethinus HOM05D002995 ORTHO05D003319 1.2e-08 65.5 278 31.7
CANSAT56G0839 Cannabis sativa HOM05D002995 ORTHO05D003319 2.1e-08 64.7 385 25.2
Glyma.07G035200 Glycine max HOM05D002995 ORTHO05D003319 2.1e-08 64.7 231 31.6
Atru.chr1.3809 Acer truncatum HOM05D002995 ORTHO05D003319 2.7e-08 64.3 275 27.3
BraA07t31446Z Brassica rapa HOM05D002995 ORTHO05D003319 2.7e-08 64.3 258 34.5
A07p38920 Brassica napus HOM05D002995 ORTHO05D003319 3.6e-08 63.9 349 32.7
Sed0003823 Sechium edule HOM05D002995 ORTHO05D003319 3.6e-08 63.9 301 26.6
Aa31LG4G3140 Aethionema arabicum HOM05D002995 ORTHO05D003319 4.7e-08 63.5 497 23.3
CANSAT56G3219 Cannabis sativa HOM05D002995 ORTHO05D003319 4.7e-08 63.5 463 28.1
BraA10t43532Z Brassica rapa HOM05D002995 ORTHO05D003319 6.1e-08 63.2 246 28.0
COL.COLO4_18154 Corchorus olitorius HOM05D002995 ORTHO05D003319 6.1e-08 63.2 278 26.3
Thhalv10019633m.g Eutrema salsugineum HOM05D002995 ORTHO05D003319 7.9e-08 62.8 146 32.9
BraA07t30647Z Brassica rapa HOM05D002995 ORTHO05D003319 1.0e-07 62.4 139 34.5
TWI34G1727 Tripterygium wilfordii HOM05D002995 ORTHO05D003319 1.0e-07 62.4 181 28.2
BcaB08g36011 Brassica carinata HOM05D002995 ORTHO05D003319 1.4e-07 62.0 253 26.9
Cfa003043 Carpinus fangiana HOM05D002995 ORTHO05D003319 1.4e-07 62.0 422 28.0
MD02G1085400 Malus domestica HOM05D002995 ORTHO05D003319 1.4e-07 62.0 242 26.0
A10p14400 Brassica napus HOM05D002995 ORTHO05D003319 1.8e-07 61.6 243 27.6
CsaV3_1G040710 Cucumis sativus L. HOM05D005151 ORTHO05D006322 1.8e-07 61.6 234 27.4
Aa31LG3G12970 Aethionema arabicum HOM05D002995 ORTHO05D003319 2.3e-07 61.2 249 27.3
C06p47070 Brassica napus HOM05D002995 ORTHO05D003319 2.3e-07 61.2 231 29.4
MSTRG.19484 Avicennia marina HOM05D002995 ORTHO05D003319 3.0e-07 60.8 243 27.2
Cpa.g.sc28.113 Carica papaya HOM05D002995 ORTHO05D003319 3.0e-07 60.8 458 27.1
CANSAT56G3867 Cannabis sativa HOM05D002995 ORTHO05D003319 3.9e-07 60.5 464 27.6
Thhalv10013114m.g Eutrema salsugineum HOM05D002995 ORTHO05D003319 3.9e-07 60.5 255 28.2
AT1G72790 Arabidopsis thaliana HOM05D002995 ORTHO05D003319 5.1e-07 60.1 309 31.1
AL2G32470 Arabidopsis lyrata HOM05D002995 ORTHO05D003319 8.8e-07 59.3 327 28.1
BcaC08g45696 Brassica carinata HOM05D002995 ORTHO05D003319 8.8e-07 59.3 313 25.2
BolC6t38574H Brassica oleracea HOM05D002995 ORTHO05D003319 8.8e-07 59.3 313 25.2
Nitab4.5_0002842g0010 Nicotiana tabacum HOM05D002995 ORTHO05D003319 8.8e-07 59.3 299 28.4
BcaC04g20016 Brassica carinata HOM05D002995 ORTHO05D003319 1.1e-06 58.9 247 26.7
C06p34660 Brassica napus HOM05D002995 ORTHO05D003319 1.1e-06 58.9 139 35.3
C09p48760 Brassica napus HOM05D002995 ORTHO05D003319 1.1e-06 58.9 247 26.7
BolC9t57723H Brassica oleracea HOM05D002995 ORTHO05D003319 1.1e-06 58.9 247 26.7
TPR.G9778 Trifolium pratense HOM05D002995 ORTHO05D003319 1.1e-06 58.9 531 26.7
AL8G32980 Arabidopsis lyrata HOM05D002995 ORTHO05D003319 1.5e-06 58.5 304 26.3
Lj7A681T61 Lonicera japonica HOM05D002995 ORTHO05D003319 1.5e-06 58.5 238 29.4
Peaxi162Scf00353g00001 Petunia axillaris HOM05D002995 ORTHO05D003319 1.5e-06 58.5 353 27.2
AT5G57070 Arabidopsis thaliana HOM05D002995 ORTHO05D003319 2.0e-06 58.2 270 25.2
CARHR270830 Cardamine hirsuta HOM05D002995 ORTHO05D003319 2.0e-06 58.2 191 30.4
MD15G1212500 Malus domestica HOM05D002995 ORTHO05D003319 2.0e-06 58.2 239 25.9
FvH4_1g08080 Fragaria vesca HOM05D002995 ORTHO05D003319 2.6e-06 57.8 359 25.9
Carub.0002s1963 Capsella rubella HOM05D002995 ORTHO05D003319 3.3e-06 57.4 313 29.1
BcaC03g18570 Brassica carinata HOM05D002995 ORTHO05D003319 5.7e-06 56.6 307 27.7
C02p14670 Brassica napus HOM05D002995 ORTHO05D003319 5.7e-06 56.6 307 27.7
BolC2t07593H Brassica oleracea HOM05D002995 ORTHO05D003319 5.7e-06 56.6 307 27.7
Sp5g27840 Schrenkiella parvula HOM05D002995 ORTHO05D003319 5.7e-06 56.6 252 28.2
SGA_v2.0_scaffold97G29155 Striga asiatica HOM05D002995 ORTHO05D003319 5.7e-06 56.6 197 28.4
BcaB03g15016 Brassica carinata HOM05D002995 ORTHO05D003319 7.4e-06 56.2 133 30.8
Lj6g0008206 Lotus japonicus HOM05D002995 ORTHO05D003319 7.4e-06 56.2 207 30.4
Lalb_Chr11g0074441 Lupinus albus HOM05D002995 ORTHO05D003319 7.4e-06 56.2 176 27.8
Sp6g18790 Schrenkiella parvula HOM05D002995 ORTHO05D003319 7.4e-06 56.2 368 24.7


User provided reference genes

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