Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu000383.1 Olea europaea HOM05D005068 ORTHO05D007561 0.0e+00 1882.8 1001 100.0
CSS0009347 Camellia sinensis var. sinensis HOM05D005068 ORTHO05D007561 0.0e+00 1110.1 1027 63.0
CSS0048439 Camellia sinensis var. sinensis HOM05D005068 ORTHO05D007561 0.0e+00 1106.7 1024 63.0
MSTRG.22527 Avicennia marina HOM05D005068 ORTHO05D007561 0.0e+00 1087.0 1027 63.3
Manes.09G018800 Manihot esculenta HOM05D005068 ORTHO05D007561 0.0e+00 1085.9 1047 60.6
CiPaw.01G213900 Carya illinoinensis HOM05D005068 ORTHO05D007561 1.4e-310 1069.7 1038 61.0
TAR628G1511 Trochodendron aralioides HOM05D005068 ORTHO05D007561 2.3e-310 1068.9 1013 61.4
Solyc03g123530.4 Solanum lycopersicum HOM05D005068 ORTHO05D007561 4.8e-308 1061.2 1014 60.4
SalBow6G5915 Salvia bowleyana HOM05D005068 ORTHO05D007561 7.0e-307 1057.4 1055 61.0
CAN.G790.67 Capsicum annuum HOM05D005068 ORTHO05D007561 7.2e-304 1047.3 1010 60.7
Sed0003275 Sechium edule HOM05D005068 ORTHO05D007561 1.6e-303 1046.2 1010 61.2
Sed0017975 Sechium edule HOM05D005068 ORTHO05D007561 5.2e-302 1041.2 1011 59.8
Phvul.010G125200 Phaseolus vulgaris HOM05D005068 ORTHO05D007561 1.2e-301 1040.0 1030 58.5
QL05p001958 Quercus lobata HOM05D005068 ORTHO05D007561 4.4e-301 1038.1 1049 58.3
Glyma.07G043700 Glycine max HOM05D005068 ORTHO05D007561 1.3e-300 1036.6 1025 59.4
Nitab4.5_0003981g0040 Nicotiana tabacum HOM05D005068 ORTHO05D007561 2.8e-300 1035.4 1011 60.7
Peaxi162Scf00038g02247 Petunia axillaris HOM05D005068 ORTHO05D007561 4.9e-300 1034.6 1011 59.8
MD17G1151100 Malus domestica HOM05D005068 ORTHO05D007561 8.3e-300 1033.9 1035 58.5
VMungo0331G1431 Vigna mungo HOM05D005068 ORTHO05D007561 7.0e-299 1030.8 1023 58.8
arahy.Tifrunner.gnm1.ann1.JS5XG8 Arachis hypogaea HOM05D005068 ORTHO05D007561 1.0e-297 1026.9 1044 58.4
MD09G1175700 Malus domestica HOM05D005068 ORTHO05D007561 4.7e-295 1018.1 1057 57.2
Sopen03g041300 Solanum pennellii HOM05D005068 ORTHO05D007561 2.3e-294 1015.8 1026 58.9
GSVIVG01016696001 Vitis vinifera HOM05D005068 ORTHO05D007561 3.1e-294 1015.4 1030 58.9
MELO3C024322.2 Cucumis melo HOM05D005068 ORTHO05D007561 4.0e-294 1015.0 1032 58.9
CsaV3_7G034120 Cucumis sativus L. HOM05D005068 ORTHO05D007561 6.8e-294 1014.2 1017 59.4
PGR102G2847 Punica granatum HOM05D005068 ORTHO05D007561 2.0e-293 1012.7 1002 59.0
Cfa003490 Carpinus fangiana HOM05D005068 ORTHO05D007561 2.6e-293 1012.3 1064 57.5
Cpa.g.sc25.173 Carica papaya HOM05D005068 ORTHO05D007561 5.8e-293 1011.1 1066 57.2
PSO384G5027 Papaver somniferum HOM05D005068 ORTHO05D007561 7.5e-293 1010.7 1075 56.1
Nitab4.5_0009947g0020 Nicotiana tabacum HOM05D005068 ORTHO05D007561 6.4e-292 1007.7 910 63.5
TWI59G1220 Tripterygium wilfordii HOM05D005068 ORTHO05D007561 1.2e-290 1003.4 1075 57.1
Potri.001G164100 Populus trichocarpa HOM05D005068 ORTHO05D007561 2.0e-290 1002.7 1020 57.8
Hund18654 Selenicereus undatus HOM05D005068 ORTHO05D007561 2.0e-290 1002.7 1047 57.8
Psat2g016360 Pisum sativum HOM05D005068 ORTHO05D007561 3.0e-289 998.8 1043 57.4
Gorai.011G056800 Gossypium raimondii HOM05D005068 ORTHO05D007561 1.1e-288 996.9 1031 57.1
Gohir.D10G053200 Gossypium hirsutum HOM05D005068 ORTHO05D007561 7.3e-288 994.2 1031 57.4
Prupe.3G034700 Prunus persica HOM05D005068 ORTHO05D007561 1.6e-287 993.0 1017 57.8
Peaxi162Scf00535g00325 Petunia axillaris HOM05D005068 ORTHO05D007561 6.2e-287 991.1 1009 58.0
PSO339G5314 Papaver somniferum HOM05D005068 ORTHO05D007561 2.0e-285 986.1 1064 56.1
Lsat_1_v5_gn_5_136720 Lactuca sativa HOM05D005068 ORTHO05D007561 4.4e-285 984.9 1007 58.3
Medtr4g119670 Medicago truncatula HOM05D005068 ORTHO05D007561 9.8e-285 983.8 1019 56.9
ECA234G0903 Erigeron canadensis HOM05D005068 ORTHO05D007561 1.3e-284 983.4 1010 57.9
Lj3g0023295 Lotus japonicus HOM05D005068 ORTHO05D007561 1.7e-284 983.0 1030 57.2
FAN14G5424 Fragaria x ananassa HOM05D005068 ORTHO05D007561 2.2e-284 982.6 1025 56.6
FAN05G3041 Fragaria x ananassa HOM05D005068 ORTHO05D007561 4.9e-284 981.5 1019 56.6
Medtr5g019130 Medicago truncatula HOM05D005068 ORTHO05D007561 1.4e-283 979.9 1028 56.4
CANSAT01G1537 Cannabis sativa HOM05D005068 ORTHO05D007561 2.4e-283 979.2 1034 57.8
Lalb_Chr04g0253821 Lupinus albus HOM05D005068 ORTHO05D007561 2.4e-283 979.2 986 58.5
RcHm_v2.0_Chr2g0147011 Rosa chinensis HOM05D005068 ORTHO05D007561 4.1e-283 978.4 1010 57.3
Atru.chr1.4129 Acer truncatum HOM05D005068 ORTHO05D007561 7.0e-283 977.6 1064 57.2
Aqoxy1G00349 Aquilegia oxysepala HOM05D005068 ORTHO05D007561 7.0e-283 977.6 1012 57.4
Cc04_g00890 Coffea canephora HOM05D005068 ORTHO05D007561 9.2e-283 977.2 1024 57.3
FvH4_6g35460 Fragaria vesca HOM05D005068 ORTHO05D007561 1.3e-281 973.4 1025 56.3
HanXRQChr12g0360151 Helianthus annuus HOM05D005068 ORTHO05D007561 5.6e-280 968.0 998 56.7
Ca_23422_v3 Cicer arietinum L. HOM05D005068 ORTHO05D007561 9.5e-280 967.2 1031 56.7
TPR.G16658 Trifolium pratense HOM05D005068 ORTHO05D007561 2.8e-279 965.7 1059 55.1
Haze_16103 Corylus avellana HOM05D005068 ORTHO05D007561 4.0e-278 961.8 1174 52.7
Gohir.A10G051500 Gossypium hirsutum HOM05D005068 ORTHO05D007561 3.4e-277 958.7 1039 55.4
Ciclev10024779m.g Citrus clementina HOM05D005068 ORTHO05D007561 4.9e-276 954.9 1048 56.7
Eucgr.J02606 Eucalyptus grandis HOM05D005068 ORTHO05D007561 2.4e-275 952.6 1050 55.0
ClCG09G001250 Citrullus lanatus HOM05D005068 ORTHO05D007561 9.2e-275 950.7 1033 56.5
DCAR_026429 Daucus carota HOM05D005068 ORTHO05D007561 2.7e-274 949.1 1026 55.6
Glyma.16G012100 Glycine max HOM05D005068 ORTHO05D007561 1.3e-273 946.8 1023 56.2
Rhsim08G0242500 Rhododendron simsii HOM05D005068 ORTHO05D007561 1.7e-273 946.4 1013 58.2
EL10Ac7g16459 Beta vulgaris HOM05D005068 ORTHO05D007561 1.9e-272 943.0 1071 53.3
THA.LOC104808063 Tarenaya hassleriana HOM05D005068 ORTHO05D007561 1.2e-271 940.3 985 57.5
Sabra01G0128700 Salix brachista HOM05D005068 ORTHO05D007561 1.1e-270 937.2 1019 55.8
Thecc.06G127400 Theobroma cacao HOM05D005068 ORTHO05D007561 1.3e-268 930.2 1041 55.0
unitig_26.g8921 Utricularia gibba HOM05D005068 ORTHO05D007561 3.8e-268 928.7 1019 56.0
AUR62009935 Chenopodium quinoa HOM05D005068 ORTHO05D007561 4.2e-267 925.2 1033 53.1
arahy.Tifrunner.gnm1.ann1.X03KN2 Arachis hypogaea HOM05D005068 ORTHO05D007561 9.2e-267 924.1 1032 54.8
FAN09G4827 Fragaria x ananassa HOM05D005068 ORTHO05D007561 1.2e-266 923.7 1027 54.4
AUR62001432 Chenopodium quinoa HOM05D005068 ORTHO05D007561 3.5e-266 922.2 1036 52.5
Ca_30848_v3 Cicer arietinum L. HOM05D005068 ORTHO05D007561 7.8e-266 921.0 858 60.4
Lj5A31T61 Lonicera japonica HOM05D005068 ORTHO05D007561 1.1e-264 917.1 853 61.3
AT1G72440 Arabidopsis thaliana HOM05D005068 ORTHO05D007561 1.3e-257 893.6 1024 53.2
Sp5g27520 Schrenkiella parvula HOM05D005068 ORTHO05D007561 1.7e-257 893.3 1037 53.5
C06p46800 Brassica napus HOM05D005068 ORTHO05D007561 5.6e-256 888.3 992 54.4
BolC6t39723H Brassica oleracea HOM05D005068 ORTHO05D007561 8.1e-255 884.4 1001 54.0
AL2G32110 Arabidopsis lyrata HOM05D005068 ORTHO05D007561 1.1e-254 884.0 927 56.9
Carub.0002s1929 Capsella rubella HOM05D005068 ORTHO05D007561 2.9e-252 875.9 874 57.2
SGA_v2.0_scaffold71G23904 Striga asiatica HOM05D005068 ORTHO05D007561 1.1e-251 874.0 1015 55.1
Nn8g38536 Nelumbo nucifera HOM05D005068 ORTHO05D007561 3.2e-251 872.5 1013 54.6
Actinidia21819 Actinidia chinensis HOM05D005068 ORTHO05D007561 1.3e-249 867.1 887 59.1
CDE05G0629 Ceratophyllum demersum HOM05D005068 ORTHO05D007561 1.8e-249 866.7 1008 52.6
vmacro15071 Vaccinium macrocarpon HOM05D005068 ORTHO05D007561 6.7e-249 864.8 853 59.2
BcaC08g46695 Brassica carinata HOM05D005068 ORTHO05D007561 1.1e-248 864.0 996 53.2
CARHR065370 Cardamine hirsuta HOM05D005068 ORTHO05D007561 4.8e-247 858.6 1032 52.5
Thhalv10018056m.g Eutrema salsugineum HOM05D005068 ORTHO05D007561 6.9e-246 854.7 1038 51.3
BcaB03g14995 Brassica carinata HOM05D005068 ORTHO05D007561 1.5e-245 853.6 1027 52.7
BraA07t31420Z Brassica rapa HOM05D005068 ORTHO05D007561 4.8e-239 832.0 1006 52.4
HPP92_014041 Vanilla planifolia HOM05D005068 ORTHO05D007561 4.8e-239 832.0 1048 49.9
Aa31LG4G2770 Aethionema arabicum HOM05D005068 ORTHO05D007561 1.7e-236 823.5 1033 50.1
ATR0317G028 Amborella trichopoda HOM05D005068 ORTHO05D007561 2.5e-235 819.7 1065 51.4
Nitab4.5_0007072g0030 Nicotiana tabacum HOM05D005068 ORTHO05D007561 5.5e-235 818.5 807 59.6
MBI13_g01677_MAGBIO Magnolia biondii HOM05D005068 ORTHO05D007561 8.7e-233 811.2 880 55.5
Os09g0116400 Oryza sativa ssp. japonica HOM05D005068 ORTHO05D007561 3.8e-228 795.8 1022 48.6
SEGI_35987 Sequoiadendron giganteum HOM05D005068 ORTHO05D007561 1.4e-227 793.9 1072 47.2
Zm00001eb008900 Zea mays HOM05D005068 ORTHO05D007561 1.5e-224 783.9 1019 47.9
Migut.I01119 Erythranthe guttata HOM05D005068 ORTHO05D007561 2.5e-224 783.1 1018 51.3
TAR383G0209 Trochodendron aralioides HOM05D005068 ORTHO05D007561 7.2e-211 738.4 699 62.7
vmacro14086 Vaccinium macrocarpon HOM05D005068 ORTHO05D007561 1.7e-204 717.2 629 63.9
SHI38508 Sapria himalayana HOM05D005068 ORTHO05D007561 1.8e-190 670.6 992 45.7
COL.COLO4_30833 Corchorus olitorius HOM05D005068 ORTHO05D007561 5.4e-190 669.1 550 64.9
FAN02G4153 Fragaria x ananassa HOM05D005068 ORTHO05D007561 4.6e-181 639.4 610 58.9
AagrBONN_evm.TU.Sc2ySwM_228.3616 Anthoceros agrestis HOM05D005068 ORTHO05D007561 2.3e-177 627.1 923 42.5
Pp3c8_7540 Physcomitrium patens HOM05D005068 ORTHO05D007561 4.9e-175 619.4 1162 38.3
A07p38620 Brassica napus HOM05D005068 ORTHO05D007561 3.0e-164 583.6 551 59.7
Mapoly0001s0039 Marchantia polymorpha HOM05D005068 ORTHO05D007561 5.1e-164 582.8 1011 40.7
Dinv37834 Davidia involucrata HOM05D005068 ORTHO05D007561 2.5e-163 580.5 484 67.8
ECA234G3781 Erigeron canadensis HOM05D005068 ORTHO05D007561 1.4e-153 548.1 887 42.4
PGSC0003DMG400009145 Solanum tuberosum HOM05D005068 ORTHO05D007561 7.8e-149 532.3 580 56.9
Sc12g0010810 Simmondsia chinensis HOM05D005068 ORTHO05D007561 1.5e-144 518.1 744 46.8
CBR_g4353 Chara braunii HOM05D005068 ORTHO05D007561 1.9e-142 511.1 1035 35.7
CDE11G1047 Ceratophyllum demersum HOM05D005068 ORTHO05D007561 1.6e-138 498.0 626 48.1
SMO356G0436 Selaginella moellendorffii HOM05D005068 ORTHO05D007561 4.6e-133 479.9 830 38.4
Dinv37835 Davidia involucrata HOM05D005068 ORTHO05D007561 7.2e-118 429.5 360 66.4
Cre10.g459600 Chlamydomonas reinhardtii HOM05D005068 ORTHO05D007561 1.8e-97 361.7 915 33.3
CDE11G0362 Ceratophyllum demersum HOM05D005068 ORTHO05D007561 7.5e-91 339.7 361 54.6
Haze_25369 Corylus avellana HOM05D005068 ORTHO05D007561 2.2e-79 301.6 635 36.9
TAR383G0400 Trochodendron aralioides HOM05D005068 ORTHO05D007561 1.2e-77 295.8 382 47.4
PRCOL_00007240 Prasinoderma coloniale HOM05D005068 ORTHO05D007561 2.1e-69 268.5 838 31.0
Cfa026526 Carpinus fangiana HOM05D005068 ORTHO05D007561 1.6e-64 252.3 736 29.8
SHI25215 Sapria himalayana HOM05D005068 ORTHO05D007561 4.6e-64 250.8 530 39.1
MSTRG.13912 Avicennia marina HOM05D005068 ORTHO05D019833 2.0e-56 225.3 245 61.2
FAN23G2170 Fragaria x ananassa HOM05D005068 ORTHO05D007561 8.1e-53 213.4 186 62.9
Cc00_g06320 Coffea canephora HOM05D005068 ORTHO05D007561 2.6e-51 208.4 158 70.3
vmacro14085 Vaccinium macrocarpon HOM05D005068 ORTHO05D007561 3.6e-45 188.0 222 54.5
Psat7g194920 Pisum sativum HOM05D005068 ORTHO05D030493 1.1e-38 166.4 235 46.0
Lj5C31T11 Lonicera japonica HOM05D005068 ORTHO05D019833 4.9e-34 151.0 222 50.0
HanXRQChr04g0122031 Helianthus annuus HOM05D005068 ORTHO05D007561 2.0e-27 129.0 132 55.3
vmacro15070 Vaccinium macrocarpon HOM05D005068 ORTHO05D019833 9.9e-27 126.7 196 50.0
Hund18058 Selenicereus undatus HOM05D005068 ORTHO05D030493 2.1e-21 109.0 164 45.1
Psat7g194960 Pisum sativum HOM05D005068 ORTHO05D030493 2.6e-19 102.1 128 47.7
ECA233G2064 Erigeron canadensis HOM05D005068 ORTHO05D007561 3.8e-18 98.2 90 57.8
Sc16g0005210 Simmondsia chinensis HOM05D005068 ORTHO05D019833 1.9e-17 95.9 207 40.6
Sc16g0005100 Simmondsia chinensis HOM05D005068 ORTHO05D014954 1.2e-16 93.2 58 72.4
COL.COLO4_30832 Corchorus olitorius HOM05D005068 ORTHO05D014954 2.1e-16 92.4 51 84.3
Zm00001eb239840 Zea mays HOM05D001561 ORTHO05D001715 2.7e-16 92.0 84 52.4
Psat4g066440 Pisum sativum HOM05D005068 ORTHO05D030493 3.9e-15 88.2 81 55.6
Sc16g0005200 Simmondsia chinensis HOM05D005068 ORTHO05D019833 1.4e-09 69.7 130 38.5
C04p42190 Brassica napus HOM05D014151 ORTHO05D014954 1.0e-07 63.5 45 62.2
C09p50490 Brassica napus HOM05D014151 ORTHO05D014954 1.0e-07 63.5 45 62.2
C03p21460 Brassica napus HOM05D014151 ORTHO05D014954 3.9e-07 61.6 45 60.0
BolC3t14532H Brassica oleracea HOM05D014151 ORTHO05D014954 3.9e-07 61.6 45 60.0
BcaC09g47952 Brassica carinata HOM05D014151 ORTHO05D014954 8.7e-07 60.5 45 57.8
vmacro14087 Vaccinium macrocarpon HOM05D005068 ORTHO05D019833 1.9e-06 59.3 37 73.0
Psat7g258920 Pisum sativum HOM05D002153 ORTHO05D002137 7.4e-06 57.4 47 57.4


User provided reference genes

Program Settings