Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu000366.2 Olea europaea HOM05D004971 ORTHO05D006289 1.7e-182 642.5 310 100.0
Oeu017816.1 Olea europaea HOM05D004971 ORTHO05D006289 2.5e-114 416.0 240 82.1
MSTRG.19566 Avicennia marina HOM05D004971 ORTHO05D006289 4.5e-111 405.2 295 68.5
Dinv41645 Davidia involucrata HOM05D004971 ORTHO05D006289 9.3e-109 397.5 287 66.2
SGA_v2.0_scaffold22G09903 Striga asiatica HOM05D004971 ORTHO05D006289 7.9e-108 394.4 315 64.1
CSS0031404 Camellia sinensis var. sinensis HOM05D004971 ORTHO05D006289 1.1e-106 390.6 308 64.6
SGA_v2.0_scaffold20G09148 Striga asiatica HOM05D004971 ORTHO05D006289 1.1e-106 390.6 315 63.5
Migut.J01131 Erythranthe guttata HOM05D004971 ORTHO05D006289 3.2e-101 372.5 284 63.4
Sopen05g028390 Solanum pennellii HOM05D004971 ORTHO05D006289 2.2e-97 359.8 297 60.6
Rhsim03G0239000 Rhododendron simsii HOM05D004971 ORTHO05D006289 3.7e-97 359.0 287 62.4
GSVIVG01015340001 Vitis vinifera HOM05D004971 ORTHO05D006289 8.2e-97 357.8 314 60.5
Cc06_g10130 Coffea canephora HOM05D004971 ORTHO05D006289 1.5e-95 353.6 283 62.2
CiPaw.03G227700 Carya illinoinensis HOM05D004971 ORTHO05D006289 2.6e-95 352.8 287 61.3
Nitab4.5_0003331g0010 Nicotiana tabacum HOM05D004971 ORTHO05D006289 5.9e-95 351.7 289 59.9
Solyc05g050000.3 Solanum lycopersicum HOM05D004971 ORTHO05D006289 7.7e-95 351.3 311 57.6
Nitab4.5_0000066g0130 Nicotiana tabacum HOM05D004971 ORTHO05D006289 2.9e-94 349.4 293 59.4
ECA240G1764 Erigeron canadensis HOM05D004971 ORTHO05D006289 5.0e-94 348.6 313 58.5
HanXRQChr09g0239411 Helianthus annuus HOM05D004971 ORTHO05D006289 1.4e-93 347.1 311 59.2
Lsat_1_v5_gn_7_41360 Lactuca sativa HOM05D004971 ORTHO05D006289 7.9e-92 341.3 311 56.9
Prupe.7G224700 Prunus persica HOM05D004971 ORTHO05D006289 7.9e-92 341.3 307 55.0
PGSC0003DMG400021659 Solanum tuberosum HOM05D004971 ORTHO05D006289 1.8e-91 340.1 364 50.3
QL01p004043 Quercus lobata HOM05D004971 ORTHO05D006289 1.5e-90 337.0 288 59.4
Actinidia32663 Actinidia chinensis HOM05D004971 ORTHO05D006289 4.4e-90 335.5 313 56.5
CANSAT56G2306 Cannabis sativa HOM05D004971 ORTHO05D006289 4.4e-90 335.5 312 55.8
Peaxi162Scf00539g00614 Petunia axillaris HOM05D004971 ORTHO05D006289 5.7e-90 335.1 303 56.8
unitig_748.g8739 Utricularia gibba HOM05D004971 ORTHO05D006289 9.7e-90 334.3 287 58.2
CAN.G399.3 Capsicum annuum HOM05D004971 ORTHO05D006289 1.3e-89 334.0 252 63.9
CANSAT56G1645 Cannabis sativa HOM05D004971 ORTHO05D006289 3.7e-89 332.4 306 56.2
VMungo0251G3379 Vigna mungo HOM05D004971 ORTHO05D006289 1.1e-88 330.9 302 56.0
Glyma.08G035500 Glycine max HOM05D004971 ORTHO05D006289 3.1e-88 329.3 296 56.4
Eucgr.C03795 Eucalyptus grandis HOM05D004971 ORTHO05D006289 5.9e-87 325.1 302 53.6
Lalb_Chr05g0223101 Lupinus albus HOM05D004971 ORTHO05D006289 7.7e-87 324.7 310 53.5
Thecc.09G104800 Theobroma cacao HOM05D004971 ORTHO05D006289 1.0e-86 324.3 294 55.4
Carub.0008s1117 Capsella rubella HOM05D004971 ORTHO05D006289 1.7e-86 323.6 289 56.7
AT5G51130 Arabidopsis thaliana HOM05D004971 ORTHO05D006289 6.5e-86 321.6 287 56.4
THA.LOC104811095 Tarenaya hassleriana HOM05D004971 ORTHO05D006289 6.5e-86 321.6 314 54.1
Potri.018G084700 Populus trichocarpa HOM05D004971 ORTHO05D006289 8.5e-86 321.2 292 52.7
RcHm_v2.0_Chr2g0091361 Rosa chinensis HOM05D004971 ORTHO05D006289 8.5e-86 321.2 319 53.0
AL8G25390 Arabidopsis lyrata HOM05D004971 ORTHO05D006289 1.1e-85 320.9 309 54.7
CARHR256940 Cardamine hirsuta HOM05D004971 ORTHO05D006289 1.9e-85 320.1 288 55.9
PGR102G0147 Punica granatum HOM05D004971 ORTHO05D006289 1.9e-85 320.1 249 62.7
TAR626G1908 Trochodendron aralioides HOM05D001382 ORTHO05D006289 3.2e-85 319.3 309 53.7
Phvul.002G310900 Phaseolus vulgaris HOM05D004971 ORTHO05D006289 5.5e-85 318.5 313 51.8
TAR636G2606 Trochodendron aralioides HOM05D004971 ORTHO05D006289 7.2e-85 318.2 309 53.4
Lj4g0001585 Lotus japonicus HOM05D004971 ORTHO05D006289 9.4e-85 317.8 283 54.4
Aa31LG3G7640 Aethionema arabicum HOM05D004971 ORTHO05D006289 2.7e-84 316.2 309 53.4
Thhalv10014188m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 6.1e-84 315.1 282 56.4
arahy.Tifrunner.gnm1.ann1.050WC1 Arachis hypogaea HOM05D004971 ORTHO05D006289 1.0e-83 314.3 313 53.0
Nn3g18146 Nelumbo nucifera HOM05D004971 ORTHO05D006289 2.3e-83 313.2 306 51.0
Sc08g0007770 Simmondsia chinensis HOM05D004971 ORTHO05D006289 5.2e-83 312.0 293 53.2
FAN26G3039 Fragaria x ananassa HOM05D001382 ORTHO05D001266 1.5e-82 310.5 284 54.2
Sabra18G0073100 Salix brachista HOM05D004971 ORTHO05D006289 1.5e-82 310.5 282 52.5
FAN23G0317 Fragaria x ananassa HOM05D001382 ORTHO05D006289 2.6e-82 309.7 295 54.2
FAN28G1806 Fragaria x ananassa HOM05D001382 ORTHO05D006289 4.4e-82 308.9 288 54.5
Hund26242 Selenicereus undatus HOM05D004971 ORTHO05D006289 4.4e-82 308.9 312 52.9
TPR.G23453 Trifolium pratense HOM05D004971 ORTHO05D006289 4.4e-82 308.9 314 52.2
Atru.chr7.1418 Acer truncatum HOM05D004971 ORTHO05D006289 2.2e-81 306.6 310 53.5
FvH4_1g05710 Fragaria vesca HOM05D004971 ORTHO05D006289 2.8e-81 306.2 289 54.7
FAN19G1252 Fragaria x ananassa HOM05D001382 ORTHO05D001266 2.8e-81 306.2 290 53.8
HanXRQChr03g0061421 Helianthus annuus HOM05D004971 ORTHO05D006289 6.3e-81 305.1 249 60.6
BcaC01g06076 Brassica carinata HOM05D004971 ORTHO05D006289 8.2e-81 304.7 282 54.6
Sp6g13340 Schrenkiella parvula HOM05D004971 ORTHO05D006289 1.1e-80 304.3 278 54.7
vmacro06238 Vaccinium macrocarpon HOM05D004971 ORTHO05D006289 1.8e-80 303.5 305 51.1
COL.COLO4_34800 Corchorus olitorius HOM05D004971 ORTHO05D006289 2.4e-80 303.1 255 58.8
BcaC03g14623 Brassica carinata HOM05D004971 ORTHO05D006289 3.1e-80 302.8 277 54.9
BolC2t08195H Brassica oleracea HOM05D004971 ORTHO05D006289 3.1e-80 302.8 277 54.9
MD15G1192600 Malus domestica HOM05D004971 ORTHO05D006289 3.1e-80 302.8 311 50.8
Medtr8g102950 Medicago truncatula HOM05D004971 ORTHO05D006289 3.1e-80 302.8 311 51.1
C02p20580 Brassica napus HOM05D004971 ORTHO05D006289 4.1e-80 302.4 277 54.9
A02p12480 Brassica napus HOM05D004971 ORTHO05D006289 5.3e-80 302.0 278 54.3
BraA02t06311Z Brassica rapa HOM05D004971 ORTHO05D006289 5.3e-80 302.0 278 54.3
ClCG06G008900 Citrullus lanatus HOM05D004971 ORTHO05D006289 7.0e-80 301.6 306 50.3
BraA03t10920Z Brassica rapa HOM05D004971 ORTHO05D006289 1.2e-79 300.8 288 53.1
BcaB05g24018 Brassica carinata HOM05D004971 ORTHO05D006289 1.6e-79 300.4 278 54.3
A03p16290 Brassica napus HOM05D004971 ORTHO05D006289 3.5e-79 299.3 282 53.5
arahy.Tifrunner.gnm1.ann1.R8N6MQ Arachis hypogaea HOM05D004971 ORTHO05D006289 5.9e-79 298.5 308 51.9
BcaC01g06098 Brassica carinata HOM05D004971 ORTHO05D006289 1.0e-78 297.7 283 53.4
BolC3t14306H Brassica oleracea HOM05D004971 ORTHO05D006289 1.0e-78 297.7 283 53.4
AUR62021639 Chenopodium quinoa HOM05D004971 ORTHO05D006289 1.3e-78 297.4 309 51.5
C03p19180 Brassica napus HOM05D004971 ORTHO05D006289 1.7e-78 297.0 313 49.8
Gohir.A07G004400 Gossypium hirsutum HOM05D004971 ORTHO05D006289 2.2e-78 296.6 312 51.0
Gorai.001G007500 Gossypium raimondii HOM05D004971 ORTHO05D006289 2.2e-78 296.6 308 51.0
Gohir.D07G007800 Gossypium hirsutum HOM05D004971 ORTHO05D006289 1.1e-77 294.3 308 50.6
Lj7A659G31 Lonicera japonica HOM05D004971 ORTHO05D006289 1.2e-76 290.8 283 56.2
Aqoxy7G01513 Aquilegia oxysepala HOM05D004971 ORTHO05D006289 1.6e-76 290.4 305 49.5
Os08g0540500 Oryza sativa ssp. japonica HOM05D004971 ORTHO05D006289 6.1e-76 288.5 286 49.0
TWI12G1172 Tripterygium wilfordii HOM05D004971 ORTHO05D006289 1.4e-75 287.3 285 50.2
Psat7g014440 Pisum sativum HOM05D004971 ORTHO05D006289 2.3e-75 286.6 298 50.3
PSO675G4950 Papaver somniferum HOM05D004971 ORTHO05D006289 3.0e-75 286.2 289 52.9
PSO541G6366 Papaver somniferum HOM05D004971 ORTHO05D006289 2.0e-74 283.5 289 51.9
CsaV3_1G020790 Cucumis sativus L. HOM05D004971 ORTHO05D006289 5.7e-74 282.0 257 54.9
HPP92_012921 Vanilla planifolia HOM05D004971 ORTHO05D006289 1.4e-72 277.3 317 46.4
HPP92_012900 Vanilla planifolia HOM05D004971 ORTHO05D006289 5.3e-72 275.4 317 45.7
AUR62008451 Chenopodium quinoa HOM05D004971 ORTHO05D006289 7.0e-72 275.0 248 55.6
CSS0049746 Camellia sinensis var. sinensis HOM05D004971 ORTHO05D006289 3.8e-70 269.2 196 66.3
DCAR_028679 Daucus carota HOM05D004971 ORTHO05D006289 1.1e-69 267.7 250 55.2
SHI02711 Sapria himalayana HOM05D004971 ORTHO05D006289 1.5e-69 267.3 312 46.5
Cfa003218 Carpinus fangiana HOM05D001382 ORTHO05D001266 4.7e-68 262.3 222 58.6
Sed0000382 Sechium edule HOM05D004971 ORTHO05D006289 2.3e-67 260.0 281 48.4
Manes.16G112100 Manihot esculenta HOM05D004971 ORTHO05D006289 3.0e-67 259.6 233 55.4
Ciclev10009268m.g Citrus clementina HOM05D004971 ORTHO05D006289 2.0e-66 256.9 306 46.7
MELO3C024707.2 Cucumis melo HOM05D004971 ORTHO05D006289 4.4e-66 255.8 296 47.0
AagrBONN_evm.TU.Sc2ySwM_117.3390 Anthoceros agrestis HOM05D004971 ORTHO05D006289 1.7e-62 243.8 283 45.6
SMO232G0003 Selaginella moellendorffii HOM05D004971 ORTHO05D006289 2.1e-60 236.9 291 42.6
SMO241G0030 Selaginella moellendorffii HOM05D004971 ORTHO05D006289 8.0e-60 235.0 291 43.0
SEGI_33858 Sequoiadendron giganteum HOM05D004971 ORTHO05D006289 1.2e-58 231.1 378 36.5
Lalb_Chr14g0371731 Lupinus albus HOM05D004971 ORTHO05D006289 2.6e-58 229.9 278 42.4
CDE11G0552 Ceratophyllum demersum HOM05D004971 ORTHO05D006289 2.2e-57 226.9 288 43.1
Nitab4.5_0002165g0080 Nicotiana tabacum HOM05D004971 ORTHO05D006289 1.4e-56 224.2 292 43.5
Thhalv10006518m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 2.3e-54 216.9 216 49.1
Thhalv10027230m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 2.3e-54 216.9 216 49.1
Mapoly0002s0233 Marchantia polymorpha HOM05D004971 ORTHO05D006289 5.6e-53 212.2 323 36.2
ATR0315G075 Amborella trichopoda HOM05D004971 ORTHO05D006289 2.1e-52 210.3 206 51.9
Duzib150G1337 Durio zibethinus HOM05D004971 ORTHO05D006289 6.1e-52 208.8 212 53.3
Thhalv10026861m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 3.0e-51 206.5 216 48.6
Thhalv10027410m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 5.2e-51 205.7 216 48.6
Thhalv10027350m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 5.4e-48 195.7 222 45.9
Lalb_Chr24g0397391 Lupinus albus HOM05D004971 ORTHO05D006289 7.0e-48 195.3 188 49.5
Pp3c17_15270 Physcomitrium patens HOM05D004971 ORTHO05D006289 6.6e-46 188.7 321 35.5
MD02G1058100 Malus domestica HOM05D004971 ORTHO05D006289 1.2e-44 184.5 249 39.4
CDE05G3470 Ceratophyllum demersum HOM05D004971 ORTHO05D006289 5.8e-42 175.6 122 66.4
CBR_g687 Chara braunii HOM05D004971 ORTHO05D006289 1.8e-35 154.1 448 26.8
Ca_17315_v3 Cicer arietinum L. HOM05D004971 ORTHO05D006289 3.1e-35 153.3 202 41.6
EL10Ac8g18422 Beta vulgaris HOM05D004971 ORTHO05D006289 5.2e-35 152.5 132 57.6
MCO09G154 Micromonas commoda HOM05D004971 ORTHO05D006289 9.9e-34 148.3 300 31.7
MBI04_g02609_MAGBIO Magnolia biondii HOM05D004971 ORTHO05D000022 8.6e-30 135.2 140 47.1
Haze_02526 Corylus avellana HOM05D004971 ORTHO05D006289 4.3e-29 132.9 142 50.7
Zm00001eb198370 Zea mays HOM05D004971 ORTHO05D006289 2.1e-28 130.6 205 39.0
PRCOL_00000240 Prasinoderma coloniale HOM05D004971 ORTHO05D006289 5.2e-27 125.9 345 28.7
Cre15.g636450 Chlamydomonas reinhardtii HOM05D004971 ORTHO05D006289 5.8e-26 122.5 401 26.9
Lj4g0009518 Lotus japonicus HOM05D004971 ORTHO05D006289 1.7e-25 120.9 102 54.9
Haze_02523 Corylus avellana HOM05D004971 ORTHO05D006289 8.4e-25 118.6 126 52.4
Lalb_Chr24g0397371 Lupinus albus HOM05D004971 ORTHO05D006289 6.2e-20 102.4 138 39.9
arahy.Tifrunner.gnm1.ann1.D57MTL Arachis hypogaea HOM05D004971 ORTHO05D006289 4.0e-19 99.8 171 33.9
CSS0032398 Camellia sinensis var. sinensis HOM05D004971 ORTHO05D006289 4.0e-19 99.8 96 58.3
arahy.Tifrunner.gnm1.ann1.2J0XRF Arachis hypogaea HOM05D004971 ORTHO05D006289 2.9e-17 93.6 135 37.8
Nitab4.5_0002165g0090 Nicotiana tabacum HOM05D004971 ORTHO05D006289 3.8e-17 93.2 57 70.2
MBI19_g42779_MAGBIO Magnolia biondii HOM05D004971 ORTHO05D006289 1.1e-16 91.7 165 33.3
Actinidia07401 Actinidia chinensis HOM05D004971 ORTHO05D006289 9.3e-16 88.6 67 62.7
MBI19_g24589_MAGBIO Magnolia biondii HOM05D004971 ORTHO05D006289 2.7e-15 87.0 194 31.4
Cpa.g.sc40.24 Carica papaya HOM05D004971 ORTHO05D006289 2.3e-14 84.0 73 54.8
Nitab4.5_0001706g0070 Nicotiana tabacum HOM05D004971 ORTHO05D006289 1.1e-13 81.6 62 62.9
FvH4_7g02480 Fragaria vesca HOM05D004971 ORTHO05D022553 4.2e-08 63.2 56 53.6
FvH4_7g02600 Fragaria vesca HOM05D004971 ORTHO05D022553 4.2e-08 63.2 56 53.6
Nitab4.5_0001706g0080 Nicotiana tabacum HOM05D004971 ORTHO05D006289 1.8e-06 57.8 29 82.8
CiPaw.05G218700 Carya illinoinensis HOM05D004971 ORTHO05D006289 8.7e-06 55.5 32 71.9


User provided reference genes

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