Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu000199.1 Olea europaea HOM05D005050 ORTHO05D006198 1.4e-219 766.1 433 100.0
MSTRG.16540 Avicennia marina HOM05D005050 ORTHO05D006198 2.9e-140 502.7 433 66.3
Dinv19345 Davidia involucrata HOM05D005050 ORTHO05D006198 9.9e-133 477.6 424 65.8
Actinidia39062 Actinidia chinensis HOM05D005050 ORTHO05D006198 7.8e-130 468.0 421 64.8
CSS0001826 Camellia sinensis var. sinensis HOM05D005050 ORTHO05D006198 6.9e-126 454.9 427 63.2
SGA_v2.0_scaffold1G00335 Striga asiatica HOM05D005050 ORTHO05D006198 3.2e-123 446.0 466 59.0
Gorai.002G001300 Gossypium raimondii HOM05D005050 ORTHO05D006198 1.1e-120 437.6 432 60.4
Cc02_g22180 Coffea canephora HOM05D005050 ORTHO05D006198 1.5e-120 437.2 436 60.8
Gohir.A01G001100 Gossypium hirsutum HOM05D005050 ORTHO05D006198 4.8e-119 432.2 419 61.1
Gohir.D01G000800 Gossypium hirsutum HOM05D005050 ORTHO05D006198 4.8e-119 432.2 432 59.7
Cpa.g.sc2.30 Carica papaya HOM05D005050 ORTHO05D006198 1.8e-118 430.3 433 60.3
Hma1.2p1_0557F.1_g178270 Hydrangea macrophylla HOM05D005050 ORTHO05D006198 9.0e-118 427.9 428 61.0
Thecc.02G041900 Theobroma cacao HOM05D005050 ORTHO05D006198 1.7e-116 423.7 430 60.5
Duzib052G0527 Durio zibethinus HOM05D005050 ORTHO05D006198 2.2e-116 423.3 434 60.1
TAR628G0295 Trochodendron aralioides HOM05D005050 ORTHO05D006198 3.8e-116 422.5 432 60.0
Migut.B00660 Erythranthe guttata HOM05D005050 ORTHO05D006198 8.4e-116 421.4 435 59.8
Eucgr.G00618 Eucalyptus grandis HOM05D005050 ORTHO05D006198 1.1e-115 421.0 435 60.7
HanXRQChr03g0066561 Helianthus annuus HOM05D005050 ORTHO05D006198 4.2e-115 419.1 423 59.3
Cfa005552 Carpinus fangiana HOM05D005050 ORTHO05D006198 7.1e-115 418.3 435 59.5
Rhsim11G0132400 Rhododendron simsii HOM05D005050 ORTHO05D006198 7.1e-115 418.3 455 58.2
GSVIVG01029689001 Vitis vinifera HOM05D005050 ORTHO05D006198 7.1e-115 418.3 442 58.1
Sed0002635 Sechium edule HOM05D005050 ORTHO05D006198 1.9e-112 410.2 420 58.6
CiPaw.05G042200 Carya illinoinensis HOM05D005050 ORTHO05D006198 7.4e-112 408.3 427 57.4
SalBow5G1811 Salvia bowleyana HOM05D005050 ORTHO05D006198 1.6e-111 407.1 434 57.4
Ciclev10001338m.g Citrus clementina HOM05D005050 ORTHO05D006198 2.8e-111 406.4 426 58.7
Hma1.2p1_0557F.1_g178260 Hydrangea macrophylla HOM05D005050 ORTHO05D006198 2.8e-111 406.4 497 53.3
SalBow5G5549 Salvia bowleyana HOM05D005050 ORTHO05D006198 3.7e-111 406.0 434 57.1
ECA240G2670 Erigeron canadensis HOM05D005050 ORTHO05D006198 4.8e-111 405.6 423 59.3
FvH4_5g29810 Fragaria vesca HOM05D005050 ORTHO05D006198 4.8e-111 405.6 432 57.2
CsaV3_3G018690 Cucumis sativus L. HOM05D005050 ORTHO05D006198 8.2e-111 404.8 426 58.2
ClCG05G009900 Citrullus lanatus HOM05D005050 ORTHO05D006198 1.1e-110 404.4 434 57.6
Manes.10G132900 Manihot esculenta HOM05D005050 ORTHO05D006198 2.4e-110 403.3 422 59.0
MELO3C019500.2 Cucumis melo HOM05D005050 ORTHO05D006198 3.1e-110 402.9 430 57.4
PGSC0003DMG400029778 Solanum tuberosum HOM05D005050 ORTHO05D006198 3.1e-110 402.9 431 58.0
FAN13G0813 Fragaria x ananassa HOM05D005050 ORTHO05D006198 5.3e-110 402.1 432 56.2
Prupe.1G564400 Prunus persica HOM05D005050 ORTHO05D006198 5.3e-110 402.1 430 58.4
QL11p019153 Quercus lobata HOM05D005050 ORTHO05D006198 3.4e-109 399.4 437 56.5
RcHm_v2.0_Chr7g0223331 Rosa chinensis HOM05D005050 ORTHO05D006198 3.4e-109 399.4 429 56.4
FAN08G2278 Fragaria x ananassa HOM05D005050 ORTHO05D006198 1.0e-108 397.9 432 56.0
Lsat_1_v5_gn_9_116221 Lactuca sativa HOM05D005050 ORTHO05D006198 1.0e-108 397.9 424 59.9
FAN18G3347 Fragaria x ananassa HOM05D005050 ORTHO05D006198 2.2e-108 396.7 432 56.2
MD15G1419700 Malus domestica HOM05D005050 ORTHO05D006198 2.9e-108 396.4 453 54.5
FAN04G2386 Fragaria x ananassa HOM05D005050 ORTHO05D006198 3.8e-108 396.0 432 56.0
TWI59G1202 Tripterygium wilfordii HOM05D005050 ORTHO05D006198 1.9e-107 393.7 430 57.7
Sabra01G0160800 Salix brachista HOM05D005050 ORTHO05D006198 1.8e-105 387.1 426 55.4
MD08G1227300 Malus domestica HOM05D005050 ORTHO05D006198 8.7e-105 384.8 479 52.2
PGR042G1149 Punica granatum HOM05D005050 ORTHO05D006198 7.4e-104 381.7 428 58.4
Sed0013576 Sechium edule HOM05D005050 ORTHO05D006198 3.7e-103 379.4 423 56.5
Solyc01g104560.3 Solanum lycopersicum HOM05D005050 ORTHO05D006198 6.3e-103 378.6 428 54.7
TWI14G0535 Tripterygium wilfordii HOM05D005050 ORTHO05D006198 6.3e-103 378.6 429 56.2
TWI23G0447 Tripterygium wilfordii HOM05D005050 ORTHO05D006198 1.5e-101 374.0 430 55.1
CANSAT11G1507 Cannabis sativa HOM05D005050 ORTHO05D006198 2.6e-101 373.2 429 54.1
CAN.G1352.15 Capsicum annuum HOM05D005050 ORTHO05D006198 1.3e-100 370.9 420 55.7
Sopen01g047070 Solanum pennellii HOM05D005050 ORTHO05D006198 1.7e-100 370.5 426 55.4
Nitab4.5_0003071g0060 Nicotiana tabacum HOM05D005050 ORTHO05D006198 1.4e-99 367.5 423 54.6
Phvul.006G211700 Phaseolus vulgaris HOM05D005050 ORTHO05D006198 5.5e-99 365.5 428 55.4
Lj6g0001640 Lotus japonicus HOM05D005050 ORTHO05D006198 1.6e-98 364.0 426 55.4
VMungo0251G1671 Vigna mungo HOM05D005050 ORTHO05D006198 1.6e-98 364.0 428 56.1
Atru.chr6.1005 Acer truncatum HOM05D005050 ORTHO05D006198 2.5e-96 356.7 428 55.4
Lalb_Chr12g0208631 Lupinus albus HOM05D005050 ORTHO05D006198 1.1e-94 351.3 423 55.1
DCAR_029238 Daucus carota HOM05D005050 ORTHO05D006198 1.8e-94 350.5 406 53.9
Nitab4.5_0009907g0040 Nicotiana tabacum HOM05D005050 ORTHO05D006198 4.1e-94 349.4 434 52.1
COL.COLO4_17901 Corchorus olitorius HOM05D005050 ORTHO05D006198 9.1e-94 348.2 380 57.6
arahy.Tifrunner.gnm1.ann1.X2Y1CG Arachis hypogaea HOM05D005050 ORTHO05D006198 2.0e-93 347.1 421 53.9
Hund13068 Selenicereus undatus HOM05D005050 ORTHO05D006198 2.0e-93 347.1 417 53.5
Dinv24255 Davidia involucrata HOM05D005050 ORTHO05D006198 3.4e-93 346.3 299 67.6
Lj9A312G31 Lonicera japonica HOM05D005050 ORTHO05D006198 1.0e-92 344.7 437 53.5
Peaxi162Scf00011g00032 Petunia axillaris HOM05D005050 ORTHO05D006198 1.0e-92 344.7 431 50.8
arahy.Tifrunner.gnm1.ann1.V19TN9 Arachis hypogaea HOM05D005050 ORTHO05D006198 2.2e-92 343.6 423 53.9
Nn1g08554 Nelumbo nucifera HOM05D005050 ORTHO05D006198 9.4e-91 338.2 382 56.5
CiPaw.06G149400 Carya illinoinensis HOM05D005050 ORTHO05D006198 1.2e-90 337.8 423 53.0
MBI06_g01048_MAGBIO Magnolia biondii HOM05D005050 ORTHO05D006198 4.7e-90 335.9 431 53.6
EL10Ac2g03230 Beta vulgaris HOM05D005050 ORTHO05D006198 6.1e-90 335.5 399 52.9
Carub.0001s1495 Capsella rubella HOM05D005050 ORTHO05D006198 1.0e-89 334.7 443 51.0
Medtr2g007800 Medicago truncatula HOM05D005050 ORTHO05D006198 1.0e-89 334.7 429 52.9
arahy.Tifrunner.gnm1.ann1.UX2R4L Arachis hypogaea HOM05D005050 ORTHO05D006198 3.9e-89 332.8 422 52.4
Duzib132G0934 Durio zibethinus HOM05D005050 ORTHO05D006198 3.9e-89 332.8 418 52.4
Nn5g27962 Nelumbo nucifera HOM05D005050 ORTHO05D006198 3.9e-89 332.8 416 54.8
Glyma.08G184100 Glycine max HOM05D005050 ORTHO05D006198 6.7e-89 332.0 420 52.4
Aqoxy5G02481 Aquilegia oxysepala HOM05D005050 ORTHO05D006198 8.8e-89 331.6 452 49.6
PSO170G5110 Papaver somniferum HOM05D005050 ORTHO05D006198 1.1e-88 331.3 423 53.2
AUR62025851 Chenopodium quinoa HOM05D005050 ORTHO05D006198 2.0e-88 330.5 422 52.8
TPR.G2134 Trifolium pratense HOM05D005050 ORTHO05D006198 7.4e-88 328.6 429 53.4
PSO782G5384 Papaver somniferum HOM05D005050 ORTHO05D006198 2.8e-87 326.6 417 52.8
AT1G15200 Arabidopsis thaliana HOM05D005050 ORTHO05D006198 5.3e-86 322.4 443 49.4
arahy.Tifrunner.gnm1.ann1.HMQ04Z Arachis hypogaea HOM05D005050 ORTHO05D006198 9.1e-86 321.6 420 50.5
Ah.10g032530 Amaranthus hybridus HOM05D005050 ORTHO05D006198 2.9e-84 316.6 425 49.9
Glyma.15G048700 Glycine max HOM05D005050 ORTHO05D006198 1.5e-83 314.3 382 54.5
Potri.003G021900 Populus trichocarpa HOM05D005050 ORTHO05D006198 4.2e-83 312.8 412 49.5
AL1G27280 Arabidopsis lyrata HOM05D005050 ORTHO05D006198 1.2e-82 311.2 467 47.8
unitig_699.g19082 Utricularia gibba HOM05D005050 ORTHO05D006198 1.2e-82 311.2 461 48.2
BcaB02g06585 Brassica carinata HOM05D005050 ORTHO05D006198 4.7e-82 309.3 435 49.7
Sp1g13510 Schrenkiella parvula HOM05D005050 ORTHO05D006198 3.0e-81 306.6 415 48.9
Thhalv10007720m.g Eutrema salsugineum HOM05D005050 ORTHO05D006198 3.9e-81 306.2 381 51.4
A06p11180 Brassica napus HOM05D005050 ORTHO05D006198 5.2e-81 305.8 428 49.3
TAR161G0004 Trochodendron aralioides HOM05D005050 ORTHO05D006198 5.2e-81 305.8 286 61.2
THA.LOC104805935 Tarenaya hassleriana HOM05D005050 ORTHO05D006198 1.1e-80 304.7 425 48.0
CDE12G0224 Ceratophyllum demersum HOM05D005050 ORTHO05D006198 7.4e-80 302.0 422 50.0
Oeu026060.1 Olea europaea HOM05D005050 ORTHO05D006198 1.4e-78 297.7 181 88.4
HPP92_002179 Vanilla planifolia HOM05D005050 ORTHO05D006198 7.7e-77 292.0 406 48.3
BcaC05g25448 Brassica carinata HOM05D005050 ORTHO05D006198 1.3e-76 291.2 400 50.0
C05p13300 Brassica napus HOM05D005050 ORTHO05D006198 1.3e-76 291.2 400 50.0
Oeu026061.1 Olea europaea HOM05D005050 ORTHO05D006198 2.9e-76 290.0 247 68.8
vmacro01791 Vaccinium macrocarpon HOM05D005050 ORTHO05D006198 5.0e-76 289.3 318 55.3
HPP92_002226 Vanilla planifolia HOM05D005050 ORTHO05D006198 1.6e-74 284.3 403 47.4
unitig_27.g24937 Utricularia gibba HOM05D005050 ORTHO05D006198 1.3e-71 274.6 269 62.8
AUR62029865 Chenopodium quinoa HOM05D005050 ORTHO05D006198 1.1e-70 271.6 361 51.8
CDE01G0517 Ceratophyllum demersum HOM05D005050 ORTHO05D006198 1.4e-70 271.2 434 47.5
SHI16611 Sapria himalayana HOM05D005050 ORTHO05D006198 2.4e-70 270.4 416 45.7
Aa31LG1G10 Aethionema arabicum HOM05D005050 ORTHO05D006198 1.7e-68 264.2 427 43.6
Lalb_Chr07g0189191 Lupinus albus HOM05D005050 ORTHO05D006198 2.0e-64 250.8 301 54.8
Potri.001G208200 Populus trichocarpa HOM05D005050 ORTHO05D006198 5.7e-64 249.2 277 57.0
ATR0121G012 Amborella trichopoda HOM05D005050 ORTHO05D006198 2.2e-63 247.3 409 45.7
Sc10g0004970 Simmondsia chinensis HOM05D005050 ORTHO05D006198 9.1e-62 241.9 324 49.7
Zm00001eb216800 Zea mays HOM05D005050 ORTHO05D006198 1.7e-60 237.7 411 43.1
Psat1g219800 Pisum sativum HOM05D005050 ORTHO05D006198 2.8e-58 230.3 276 56.9
BcaNung05518 Brassica carinata HOM05D005050 ORTHO05D006198 8.0e-58 228.8 426 42.5
AUR62018227 Chenopodium quinoa HOM05D005050 ORTHO05D006198 3.2e-54 216.9 331 45.9
BraA06t24298Z Brassica rapa HOM05D005050 ORTHO05D006198 7.0e-54 215.7 269 52.8
BolC5t30067H Brassica oleracea HOM05D005050 ORTHO05D006198 9.2e-54 215.3 275 53.8
CARHR015720 Cardamine hirsuta HOM05D005050 ORTHO05D006198 5.9e-53 212.6 278 52.9
BolC8t52057H Brassica oleracea HOM05D005050 ORTHO05D006198 3.9e-52 209.9 270 51.5
arahy.Tifrunner.gnm1.ann1.5TH0SF Arachis hypogaea HOM05D005050 ORTHO05D006198 4.4e-48 196.4 269 52.0
C08p45110 Brassica napus HOM05D005050 ORTHO05D006198 1.6e-45 188.0 339 39.5
CANSAT25G2757 Cannabis sativa HOM05D005050 ORTHO05D006198 1.6e-45 188.0 198 55.1
Mapoly0066s0029 Marchantia polymorpha HOM05D005050 ORTHO05D006198 9.5e-43 178.7 316 42.1
AagrBONN_evm.TU.Sc2ySwM_344.3376 Anthoceros agrestis HOM05D005050 ORTHO05D006198 6.2e-42 176.0 444 36.7
Haze_01617 Corylus avellana HOM05D005050 ORTHO05D006198 3.1e-41 173.7 198 56.6
Os03g0701900 Oryza sativa ssp. japonica HOM05D005050 ORTHO05D006198 3.4e-40 170.2 263 47.9
Zm00001eb054200 Zea mays HOM05D005050 ORTHO05D006198 1.6e-37 161.4 271 45.0
BcaB03g14555 Brassica carinata HOM05D005050 ORTHO05D006198 2.7e-37 160.6 324 38.9
Pp3c17_13310 Physcomitrium patens HOM05D005050 ORTHO05D006198 1.9e-35 154.5 357 36.7
Pp3c14_12690 Physcomitrium patens HOM05D005050 ORTHO05D006198 5.6e-35 152.9 361 38.0
BraA09t41526Z Brassica rapa HOM05D005050 ORTHO05D006198 8.4e-31 139.0 276 39.1
CANSAT35G1170 Cannabis sativa HOM05D005050 ORTHO05D006198 7.1e-30 136.0 142 52.1
CANSAT56G3350 Cannabis sativa HOM05D005050 ORTHO05D006198 1.3e-28 131.7 141 53.2
Haze_01615 Corylus avellana HOM05D005050 ORTHO05D006198 1.1e-25 122.1 132 56.1
BcaB03g14557 Brassica carinata HOM05D005050 ORTHO05D006198 1.4e-25 121.7 188 44.7
SMO116G0236 Selaginella moellendorffii HOM05D005050 ORTHO05D006198 1.8e-25 121.3 309 36.6
CBR_g5711 Chara braunii HOM05D005050 ORTHO05D006198 1.7e-23 114.8 435 32.6
unitig_27.g24936 Utricularia gibba HOM05D000188 ORTHO05D005820 4.6e-21 106.7 155 45.2
BcaB03g14552 Brassica carinata HOM05D005050 ORTHO05D006198 1.7e-20 104.8 161 41.6
CARHR015710 Cardamine hirsuta HOM05D005050 ORTHO05D006198 5.6e-19 99.8 167 44.3
Actinidia00225 Actinidia chinensis HOM05D000304 ORTHO05D000185 6.9e-17 92.8 191 36.6
BcaNung06586 Brassica carinata HOM05D005050 ORTHO05D006198 7.1e-14 82.8 107 48.6
Sabra03G0013800 Salix brachista HOM05D005050 ORTHO05D006198 1.3e-07 62.0 230 32.2
Zm00001eb142240 Zea mays HOM05D000061 ORTHO05D000050 9.3e-06 55.8 37 62.2


User provided reference genes

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