Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn8g41244 Nelumbo nucifera HOM05D005782 ORTHO05D007436 3.2e-262 907.9 464 100.0
TAR383G0506 Trochodendron aralioides HOM05D005782 ORTHO05D007436 3.3e-182 642.1 405 80.0
CSS0047952 Camellia sinensis var. sinensis HOM05D005782 ORTHO05D007436 1.2e-171 607.1 404 75.5
Haze_21249 Corylus avellana HOM05D005782 ORTHO05D007436 1.1e-164 583.9 464 65.7
MBI13_g33574_MAGBIO Magnolia biondii HOM05D005782 ORTHO05D007436 7.5e-163 577.8 405 70.4
Actinidia07556 Actinidia chinensis HOM05D005782 ORTHO05D007436 1.9e-161 573.2 378 74.9
Oeu021242.1 Olea europaea HOM05D005782 ORTHO05D007436 5.1e-159 565.1 411 68.6
TWI32G0667 Tripterygium wilfordii HOM05D005782 ORTHO05D007436 1.9e-158 563.1 408 70.1
MBI16_g00821_MAGBIO Magnolia biondii HOM05D005782 ORTHO05D007436 2.5e-158 562.8 414 69.3
MSTRG.19410 Avicennia marina HOM05D005782 ORTHO05D007436 1.2e-155 553.9 407 68.1
Aqoxy7G02605 Aquilegia oxysepala HOM05D005782 ORTHO05D007436 2.6e-155 552.7 416 68.0
CsaV3_2G009240 Cucumis sativus L. HOM05D005782 ORTHO05D007436 8.4e-154 547.7 411 68.9
Eucgr.C02158 Eucalyptus grandis HOM05D005782 ORTHO05D007436 1.2e-152 543.9 406 68.0
SGA_v2.0_scaffold318G48485 Striga asiatica HOM05D005782 ORTHO05D007436 1.2e-152 543.9 411 67.6
Potri.006G080100 Populus trichocarpa HOM05D005782 ORTHO05D007436 3.5e-152 542.3 422 68.2
Sabra06G0060600 Salix brachista HOM05D005782 ORTHO05D007436 1.3e-151 540.4 423 66.7
GSVIVG01032240001 Vitis vinifera HOM05D005782 ORTHO05D007436 3.3e-150 535.8 406 70.9
Potri.018G150000 Populus trichocarpa HOM05D005782 ORTHO05D007436 4.3e-150 535.4 429 66.7
Atru.chr7.1036 Acer truncatum HOM05D005782 ORTHO05D007436 1.2e-149 533.9 413 67.3
HanXRQChr03g0067061 Helianthus annuus HOM05D005782 ORTHO05D007436 6.2e-149 531.6 420 66.2
Cc06_g23670 Coffea canephora HOM05D005782 ORTHO05D007436 8.9e-148 527.7 403 65.0
Nitab4.5_0000170g0200 Nicotiana tabacum HOM05D005782 ORTHO05D007436 1.2e-147 527.3 413 65.4
Glyma.08G359700 Glycine max HOM05D005782 ORTHO05D007436 2.6e-147 526.2 412 65.0
PGR142G1608 Punica granatum HOM05D005782 ORTHO05D007436 2.2e-146 523.1 426 66.4
VMungo0464G0621 Vigna mungo HOM05D005782 ORTHO05D007436 2.9e-146 522.7 387 68.2
Sed0017765 Sechium edule HOM05D005782 ORTHO05D007436 1.9e-145 520.0 412 66.7
MSTRG.5969 Avicennia marina HOM05D005782 ORTHO05D007436 1.2e-144 517.3 410 64.4
Manes.05G205900 Manihot esculenta HOM05D005782 ORTHO05D007436 5.1e-143 511.9 408 65.7
Prupe.1G002100 Prunus persica HOM05D005782 ORTHO05D007436 5.6e-142 508.4 409 67.0
Ah.13g066690 Amaranthus hybridus HOM05D005782 ORTHO05D007436 1.3e-141 507.3 418 65.6
THA.LOC104803572 Tarenaya hassleriana HOM05D005782 ORTHO05D007436 1.1e-140 504.2 417 64.3
CAN.G63.1 Capsicum annuum HOM05D005782 ORTHO05D007436 6.9e-140 501.5 415 64.3
AUR62015437 Chenopodium quinoa HOM05D005782 ORTHO05D007436 6.9e-140 501.5 428 63.3
PSO170G1242 Papaver somniferum HOM05D005782 ORTHO05D007436 5.8e-139 498.4 423 64.3
PSO063G1085 Papaver somniferum HOM05D005782 ORTHO05D007436 1.3e-138 497.3 419 64.7
Sp7g28920 Schrenkiella parvula HOM05D005782 ORTHO05D007436 1.7e-138 496.9 424 62.3
EL10Ac3g05861 Beta vulgaris HOM05D005782 ORTHO05D007436 8.4e-138 494.6 420 64.0
Sopen07g022440 Solanum pennellii HOM05D005782 ORTHO05D007436 3.2e-137 492.7 411 61.8
Gorai.009G000300 Gossypium raimondii HOM05D005782 ORTHO05D007436 2.7e-136 489.6 387 65.6
Gohir.D05G000500 Gossypium hirsutum HOM05D005782 ORTHO05D007436 3.5e-136 489.2 387 65.4
FvH4_4g00180 Fragaria vesca HOM05D005782 ORTHO05D007436 4.6e-136 488.8 408 65.2
Thecc.09G201300 Theobroma cacao HOM05D005782 ORTHO05D007436 7.9e-136 488.0 415 65.1
Gohir.A05G000300 Gossypium hirsutum HOM05D005782 ORTHO05D007436 1.3e-135 487.3 387 65.9
Rhsim01G0103700 Rhododendron simsii HOM05D005782 ORTHO05D007436 3.0e-135 486.1 408 61.8
CARHR238950 Cardamine hirsuta HOM05D005782 ORTHO05D007436 3.9e-135 485.7 422 62.3
Aa31LG2G19280 Aethionema arabicum HOM05D005782 ORTHO05D007436 6.6e-135 485.0 421 61.0
Sc09g0007530 Simmondsia chinensis HOM05D005782 ORTHO05D007436 2.5e-134 483.0 337 72.1
RcHm_v2.0_Chr4g0384781 Rosa chinensis HOM05D005782 ORTHO05D007436 7.4e-134 481.5 409 65.3
Lj2g0003070 Lotus japonicus HOM05D005782 ORTHO05D007436 1.6e-133 480.3 411 61.8
RhsimUnG0238700 Rhododendron simsii HOM05D005782 ORTHO05D007436 2.8e-133 479.6 418 60.5
Nitab4.5_0000807g0130 Nicotiana tabacum HOM05D005782 ORTHO05D007436 2.4e-132 476.5 410 61.5
ATR0626G413 Amborella trichopoda HOM05D005782 ORTHO05D007436 3.1e-132 476.1 363 65.8
Migut.J00857 Erythranthe guttata HOM05D005782 ORTHO05D007436 4.0e-132 475.7 424 62.5
Lalb_Chr24g0401711 Lupinus albus HOM05D005782 ORTHO05D007436 5.3e-132 475.3 343 68.5
FAN12G2371 Fragaria x ananassa HOM05D005782 ORTHO05D007436 3.4e-131 472.6 439 60.6
ECA240G2713 Erigeron canadensis HOM05D000006 ORTHO05D000001 7.6e-131 471.5 378 65.6
TPR.G21340 Trifolium pratense HOM05D005782 ORTHO05D007436 9.9e-131 471.1 347 69.7
AL7G21030 Arabidopsis lyrata HOM05D005782 ORTHO05D007436 7.1e-129 464.9 426 59.6
AT4G31040 Arabidopsis thaliana HOM05D005782 ORTHO05D007436 9.3e-129 464.5 426 58.9
BcaNung03419 Brassica carinata HOM05D005782 ORTHO05D007436 2.7e-128 463.0 425 59.3
Thhalv10025215m.g Eutrema salsugineum HOM05D005782 ORTHO05D007436 2.7e-128 463.0 424 59.7
BcaC09g51891 Brassica carinata HOM05D005782 ORTHO05D007436 3.5e-128 462.6 419 60.1
C01p07890 Brassica napus HOM05D005782 ORTHO05D007436 3.5e-128 462.6 419 60.1
BolC1t00776H Brassica oleracea HOM05D005782 ORTHO05D007436 3.5e-128 462.6 419 60.1
Carub.0007s0948 Capsella rubella HOM05D005782 ORTHO05D007436 4.6e-128 462.2 427 60.0
arahy.Tifrunner.gnm1.ann1.PZIB41 Arachis hypogaea HOM05D005782 ORTHO05D007436 8.7e-127 458.0 358 68.2
BraA01t00665Z Brassica rapa HOM05D005782 ORTHO05D007436 8.7e-127 458.0 420 59.0
arahy.Tifrunner.gnm1.ann1.05JXYY Arachis hypogaea HOM05D005782 ORTHO05D007436 2.5e-126 456.4 354 67.8
A01p07130 Brassica napus HOM05D005782 ORTHO05D007436 2.5e-126 456.4 422 58.8
Lsat_1_v5_gn_7_57180 Lactuca sativa HOM05D005782 ORTHO05D007436 9.6e-126 454.5 418 58.9
MD04G1001800 Malus domestica HOM05D005782 ORTHO05D007436 9.6e-126 454.5 421 59.1
Cfa012886 Carpinus fangiana HOM05D005782 ORTHO05D007436 1.4e-124 450.7 323 69.3
MD10G1290500 Malus domestica HOM05D005782 ORTHO05D007436 4.5e-123 445.7 321 70.1
CANSAT80G1379 Cannabis sativa HOM05D005782 ORTHO05D007436 2.1e-120 436.8 427 58.8
QL11p006989 Quercus lobata HOM05D005782 ORTHO05D007436 1.3e-119 434.1 368 61.4
CDE02G4601 Ceratophyllum demersum HOM05D005782 ORTHO05D007436 2.3e-119 433.3 339 67.3
vmacro20737 Vaccinium macrocarpon HOM05D005782 ORTHO05D007436 2.3e-119 433.3 437 54.9
DCAR_014583 Daucus carota HOM05D005782 ORTHO05D010280 6.3e-117 425.2 330 67.9
Os08g0224300 Oryza sativa ssp. japonica HOM05D005782 ORTHO05D007436 3.1e-116 422.9 337 64.4
CiPaw.08G000500 Carya illinoinensis HOM05D005782 ORTHO05D007436 5.3e-116 422.2 240 86.7
CDE04G3649 Ceratophyllum demersum HOM05D005782 ORTHO05D007436 4.5e-115 419.1 417 58.3
AUR62002224 Chenopodium quinoa HOM05D005782 ORTHO05D007436 1.0e-114 417.9 420 56.7
MELO3C003909.2 Cucumis melo HOM05D005782 ORTHO05D007436 1.0e-114 417.9 339 64.6
COL.COLO4_07529 Corchorus olitorius HOM05D006202 ORTHO05D008227 1.3e-114 417.5 287 73.2
Zm00001eb000750 Zea mays HOM05D005782 ORTHO05D007436 1.7e-114 417.2 368 58.4
ClCG11G011190 Citrullus lanatus HOM05D005782 ORTHO05D007436 7.2e-113 411.8 510 49.0
Zm00001eb000720 Zea mays HOM05D005782 ORTHO05D007436 7.2e-113 411.8 351 59.8
Zm00001eb404240 Zea mays HOM05D005782 ORTHO05D007436 1.6e-112 410.6 350 58.9
Duzib150G0032 Durio zibethinus HOM05D005782 ORTHO05D007436 1.4e-108 397.5 369 61.2
Psat1g051920 Pisum sativum HOM05D005782 ORTHO05D007436 1.8e-108 397.1 404 56.2
Hund04583 Selenicereus undatus HOM05D005782 ORTHO05D007436 3.4e-107 392.9 371 57.7
A03p60520 Brassica napus HOM05D005782 ORTHO05D007436 2.0e-99 367.1 289 67.5
BraA03t15091Z Brassica rapa HOM05D005782 ORTHO05D007436 2.0e-99 367.1 289 67.5
BcaNung02727 Brassica carinata HOM05D005782 ORTHO05D007436 4.5e-99 365.9 423 52.0
Glyma.01G001100 Glycine max HOM05D005782 ORTHO05D007436 4.5e-99 365.9 318 59.1
Ca_25640_v3 Cicer arietinum L. HOM05D005782 ORTHO05D007436 7.9e-96 355.1 206 84.0
FAN22G1527 Fragaria x ananassa HOM05D005782 ORTHO05D007436 7.9e-96 355.1 324 62.0
FAN17G0526 Fragaria x ananassa HOM05D005782 ORTHO05D007436 5.5e-89 332.4 402 50.2
Medtr6g093210 Medicago truncatula HOM05D005782 ORTHO05D007436 8.0e-88 328.6 345 55.4
Pp3c4_7870 Physcomitrium patens HOM05D005782 ORTHO05D007436 1.3e-82 311.2 327 50.2
unitig_578.g15870 Utricularia gibba HOM05D000412 ORTHO05D000429 1.5e-81 307.8 370 48.4
HPP92_020428 Vanilla planifolia HOM05D005782 ORTHO05D007436 5.5e-81 305.8 188 78.7
SEGI_19916 Sequoiadendron giganteum HOM05D005782 ORTHO05D007436 9.4e-81 305.1 297 51.5
Mapoly0066s0016 Marchantia polymorpha HOM05D005782 ORTHO05D007436 2.7e-80 303.5 330 48.2
Pp3c10_12270 Physcomitrium patens HOM05D005782 ORTHO05D007436 3.6e-80 303.1 345 47.5
Lj5A796G22 Lonicera japonica HOM05D005782 ORTHO05D007436 2.0e-78 297.4 222 68.9
Ciclev10033693m.g Citrus clementina HOM05D005782 ORTHO05D007436 7.5e-78 295.4 174 83.9
THA.LOC104804495 Tarenaya hassleriana HOM05D005782 ORTHO05D007436 7.5e-78 295.4 175 82.9
AagrBONN_evm.TU.Sc2ySwM_117.1743 Anthoceros agrestis HOM05D005782 ORTHO05D007436 3.8e-74 283.1 321 48.3
Phvul.L001608 Phaseolus vulgaris HOM05D005782 ORTHO05D007436 2.0e-70 270.8 203 65.5
Cpa.g.sc91.69 Carica papaya HOM05D005782 ORTHO05D007436 3.4e-70 270.0 283 53.7
Gohir.A05G000250 Gossypium hirsutum HOM05D005782 ORTHO05D007436 5.7e-70 269.2 258 56.6
CBR_g84827 Chara braunii HOM05D005782 ORTHO05D007436 7.7e-67 258.8 290 49.3
BolC7t46295H Brassica oleracea HOM05D005782 ORTHO05D007436 4.3e-65 253.1 317 49.2
C07p58400 Brassica napus HOM05D005782 ORTHO05D007436 1.5e-62 244.6 317 48.3
Ciclev10033590m.g Citrus clementina HOM05D005782 ORTHO05D007436 5.7e-62 242.7 216 56.0
Peaxi162Scf00474g00214 Petunia axillaris HOM05D005782 ORTHO05D007436 1.6e-59 234.6 241 53.1
Solyc07g042800.2 Solanum lycopersicum HOM05D005782 ORTHO05D007436 3.9e-58 229.9 236 51.3
Actinidia02524 Actinidia chinensis HOM05D005782 ORTHO05D007436 1.6e-51 208.0 181 59.7
Peaxi162Scf00474g00221 Petunia axillaris HOM05D005782 ORTHO05D007436 6.6e-50 202.6 136 72.8
HPP92_020430 Vanilla planifolia HOM05D005782 ORTHO05D007436 1.3e-45 188.3 125 69.6
Solyc07g042820.3 Solanum lycopersicum HOM05D005782 ORTHO05D007436 7.1e-44 182.6 129 69.8
A08p18910 Brassica napus HOM05D005782 ORTHO05D007436 5.8e-38 162.9 291 41.6
QL11p007002 Quercus lobata HOM05D005782 ORTHO05D007436 3.3e-33 147.1 78 91.0
Cfa012883 Carpinus fangiana HOM05D005782 ORTHO05D000300 4.6e-27 126.7 101 59.4
Cre06.g260250 Chlamydomonas reinhardtii HOM05D005782 ORTHO05D007436 5.3e-23 113.2 208 35.1
BcaC01g01117 Brassica carinata HOM05D005782 ORTHO05D027183 9.9e-22 109.0 313 33.2
Actinidia02544 Actinidia chinensis HOM05D005782 ORTHO05D007436 1.8e-18 98.2 56 83.9
Dinv26495 Davidia involucrata HOM05D000001 ORTHO05D010280 5.6e-17 93.2 116 48.3
AUR62044089 Chenopodium quinoa HOM05D005782 ORTHO05D007436 1.6e-16 91.7 171 35.1
AUR62044085 Chenopodium quinoa HOM05D005782 ORTHO05D007436 8.1e-16 89.4 169 35.5
PRCOL_00003075 Prasinoderma coloniale HOM05D005782 ORTHO05D007436 1.4e-15 88.6 201 29.4
HPP92_020431 Vanilla planifolia HOM05D005782 ORTHO05D007436 4.0e-15 87.0 86 53.5
MBI15_g25469_MAGBIO Magnolia biondii HOM05D000031 ORTHO05D000030 2.2e-13 81.3 48 70.8
Solyc07g042810.3 Solanum lycopersicum HOM05D005782 ORTHO05D007436 1.1e-12 79.0 49 79.6
Lj5A796T24 Lonicera japonica HOM05D005782 ORTHO05D007436 1.9e-12 78.2 48 68.8
DCAR_032496 Daucus carota HOM05D006976 ORTHO05D008761 2.5e-09 67.8 95 32.6
SEGI_11203 Sequoiadendron giganteum HOM05D006976 ORTHO05D008761 4.3e-09 67.0 91 31.9
CAN.G129.10 Capsicum annuum HOM05D006976 ORTHO05D008761 6.2e-08 63.2 202 25.7
Sed0001172 Sechium edule HOM05D006976 ORTHO05D008761 8.2e-08 62.8 82 35.4
BraA06t25422Z Brassica rapa HOM05D006976 ORTHO05D008761 1.1e-07 62.4 204 23.0
Eucgr.I02539 Eucalyptus grandis HOM05D006976 ORTHO05D008761 1.1e-07 62.4 91 35.2
Thhalv10010976m.g Eutrema salsugineum HOM05D006976 ORTHO05D008761 1.1e-07 62.4 204 22.5
Eucgr.E01114 Eucalyptus grandis HOM05D006976 ORTHO05D008761 1.8e-07 61.6 95 33.7
Eucgr.E02607 Eucalyptus grandis HOM05D006976 ORTHO05D008761 1.8e-07 61.6 95 33.7
BcaC03g16543 Brassica carinata HOM05D006976 ORTHO05D008761 2.4e-07 61.2 204 22.5
A06p23180 Brassica napus HOM05D006976 ORTHO05D008761 2.4e-07 61.2 204 22.5
C09p40240 Brassica napus HOM05D006976 ORTHO05D008761 2.4e-07 61.2 204 22.5
BolSC35t60749H Brassica oleracea HOM05D006976 ORTHO05D008761 2.4e-07 61.2 204 22.5
BolSC46t61034H Brassica oleracea HOM05D006976 ORTHO05D008761 2.4e-07 61.2 204 22.5
BraSC25t45865Z Brassica rapa HOM05D006976 ORTHO05D008761 2.4e-07 61.2 204 22.5
BolSC29t60590H Brassica oleracea HOM05D006976 ORTHO05D008761 3.1e-07 60.8 116 26.7
AL2G20664 Arabidopsis lyrata HOM05D006976 ORTHO05D008761 5.3e-07 60.1 165 24.2
ATCG00530 Arabidopsis thaliana HOM05D006976 ORTHO05D008761 5.3e-07 60.1 197 22.3
EL10Ac4g09265 Beta vulgaris HOM05D006976 ORTHO05D008761 5.3e-07 60.1 105 30.5
BolC9t56930H Brassica oleracea HOM05D006976 ORTHO05D008761 5.3e-07 60.1 204 22.5
CARHR282110 Cardamine hirsuta HOM05D006976 ORTHO05D008761 5.3e-07 60.1 201 21.9
Oeu012774.1 Olea europaea HOM05D006976 ORTHO05D008761 5.3e-07 60.1 96 28.1
Gohir.A09G041060 Gossypium hirsutum HOM05D006976 ORTHO05D008761 6.9e-07 59.7 102 29.4
Prupe.7G029500 Prunus persica HOM05D006976 ORTHO05D008761 6.9e-07 59.7 102 29.4
BolSC47t61096H Brassica oleracea HOM05D006976 ORTHO05D008761 9.0e-07 59.3 204 22.5
Migut.D01165 Erythranthe guttata HOM05D006976 ORTHO05D008761 9.0e-07 59.3 79 32.9
Phvul.002G278108 Phaseolus vulgaris HOM05D006976 ORTHO05D008761 9.0e-07 59.3 94 33.0
FvH4_3g27991 Fragaria vesca HOM05D006976 ORTHO05D008761 1.2e-06 58.9 102 28.4
Nn2g14969 Nelumbo nucifera HOM05D006976 ORTHO05D008761 1.2e-06 58.9 201 22.4
EL10As15g24128 Beta vulgaris HOM05D000806 ORTHO05D002324 1.5e-06 58.5 105 29.5
SalBow1G3572 Salvia bowleyana HOM05D006976 ORTHO05D008761 1.5e-06 58.5 95 30.5
Zm00001eb404230 Zea mays HOM05D005782 ORTHO05D007436 1.5e-06 58.5 37 70.3
PGR111G0047 Punica granatum HOM05D006976 ORTHO05D008761 2.6e-06 57.8 201 21.4
C02p43530 Brassica napus HOM05D006976 ORTHO05D008761 3.4e-06 57.4 202 22.3
PSO548G0011 Papaver somniferum HOM05D006976 ORTHO05D008761 3.4e-06 57.4 201 22.9
Hund28750 Selenicereus undatus HOM05D006976 ORTHO05D008761 4.5e-06 57.0 101 29.7
Glyma.07G028150 Glycine max HOM05D006976 ORTHO05D008761 5.8e-06 56.6 92 32.6
QL93p0999_0001 Quercus lobata HOM05D006976 ORTHO05D008761 5.8e-06 56.6 95 28.4
arahy.Tifrunner.gnm1.ann1.Z0BJS7 Arachis hypogaea HOM05D000806 ORTHO05D002324 1.0e-05 55.8 204 21.6
HanXRQChr01g0020351 Helianthus annuus HOM05D006976 ORTHO05D008761 1.0e-05 55.8 204 22.5
HanXRQChr10g0283561 Helianthus annuus HOM05D006976 ORTHO05D008761 1.0e-05 55.8 204 22.5
HanXRQChr10g0284251 Helianthus annuus HOM05D006976 ORTHO05D008761 1.0e-05 55.8 204 22.5
HanXRQChr10g0289271 Helianthus annuus HOM05D006976 ORTHO05D008761 1.0e-05 55.8 204 22.5
HanXRQChr10g0318191 Helianthus annuus HOM05D006976 ORTHO05D008761 1.0e-05 55.8 204 22.5
HanXRQChr11g0326831 Helianthus annuus HOM05D006976 ORTHO05D008761 1.0e-05 55.8 204 22.5
HanXRQChr15g0497531 Helianthus annuus HOM05D006976 ORTHO05D008761 1.0e-05 55.8 204 22.5
HanXRQChr16g0528991 Helianthus annuus HOM05D006976 ORTHO05D008761 1.0e-05 55.8 204 22.5
HanXRQChr17g0548241 Helianthus annuus HOM05D006976 ORTHO05D008761 1.0e-05 55.8 204 22.5
HanXRQCPg0580041 Helianthus annuus HOM05D006976 ORTHO05D008761 1.0e-05 55.8 204 22.5
Hund07993 Selenicereus undatus HOM05D000806 ORTHO05D002324 1.0e-05 55.8 199 22.1


User provided reference genes

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