Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn8g41240 Nelumbo nucifera HOM05D005847 ORTHO05D007143 3.5e-291 1004.2 503 100.0
TAR629G2252 Trochodendron aralioides HOM05D005847 ORTHO05D007143 5.3e-255 884.0 503 87.3
GSVIVG01019613001 Vitis vinifera HOM05D005847 ORTHO05D007143 7.2e-244 847.0 511 81.8
MBI12_g02092_MAGBIO Magnolia biondii HOM05D005847 ORTHO05D007143 3.6e-243 844.7 510 82.4
Lj2A159T44 Lonicera japonica HOM05D005847 ORTHO05D007143 1.5e-236 822.8 512 79.1
Manes.01G053800 Manihot esculenta HOM05D005847 ORTHO05D007143 1.9e-228 795.8 507 77.3
Actinidia22190 Actinidia chinensis HOM05D005847 ORTHO05D007143 2.1e-227 792.3 503 77.3
Prupe.5G126500 Prunus persica HOM05D005847 ORTHO05D007143 1.7e-224 782.7 504 76.8
Sopen08g031110 Solanum pennellii HOM05D005847 ORTHO05D007143 4.1e-223 778.1 505 75.6
MD14G1134800 Malus domestica HOM05D005847 ORTHO05D007143 2.7e-222 775.4 504 75.0
PGR042G1950 Punica granatum HOM05D005847 ORTHO05D007143 5.9e-222 774.2 509 76.0
Solyc08g082880.4 Solanum lycopersicum HOM05D005847 ORTHO05D007143 1.0e-221 773.5 505 75.2
QL10p008953 Quercus lobata HOM05D005847 ORTHO05D007143 3.9e-221 771.5 509 75.0
Cfa011951 Carpinus fangiana HOM05D005847 ORTHO05D007143 5.0e-221 771.2 515 75.1
MD06G1113800 Malus domestica HOM05D005847 ORTHO05D007143 5.0e-221 771.2 506 74.7
Eucgr.E01030 Eucalyptus grandis HOM05D005847 ORTHO05D007143 1.1e-220 770.0 507 75.3
Haze_09129 Corylus avellana HOM05D005847 ORTHO05D007143 9.5e-220 766.9 518 74.9
Ciclev10019764m.g Citrus clementina HOM05D005847 ORTHO05D007143 1.6e-219 766.1 513 75.6
Potri.001G086800 Populus trichocarpa HOM05D005847 ORTHO05D007143 1.6e-219 766.1 506 73.9
Cc08_g16520 Coffea canephora HOM05D005847 ORTHO05D007143 8.0e-219 763.8 505 74.3
Atru.chr9.1922 Acer truncatum HOM05D005847 ORTHO05D007143 2.3e-218 762.3 514 74.7
EL10Ac5g12470 Beta vulgaris HOM05D005847 ORTHO05D007143 1.3e-216 756.5 504 72.6
Gohir.D12G239600 Gossypium hirsutum HOM05D005847 ORTHO05D007143 2.9e-216 755.4 504 73.6
Gorai.008G256700 Gossypium raimondii HOM05D005847 ORTHO05D007143 6.4e-216 754.2 504 73.4
CiPaw.11G115200 Carya illinoinensis HOM05D005847 ORTHO05D007143 8.3e-216 753.8 516 74.2
Gohir.A12G238500 Gossypium hirsutum HOM05D005847 ORTHO05D007143 5.4e-215 751.1 504 73.2
Aqoxy3G00691 Aquilegia oxysepala HOM05D005847 ORTHO05D007143 9.2e-215 750.4 521 72.0
Sed0023920 Sechium edule HOM05D005847 ORTHO05D007143 1.6e-214 749.6 508 72.4
Thecc.03G224700 Theobroma cacao HOM05D005847 ORTHO05D007143 2.0e-214 749.2 517 73.3
RcHm_v2.0_Chr2g0164461 Rosa chinensis HOM05D005847 ORTHO05D007143 2.7e-214 748.8 507 72.6
CsaV3_5G001820 Cucumis sativus L. HOM05D005847 ORTHO05D007143 6.0e-214 747.7 509 72.1
Psat4g194080 Pisum sativum HOM05D005847 ORTHO05D007143 1.0e-213 746.9 503 73.6
Duzib084G0923 Durio zibethinus HOM05D005847 ORTHO05D007143 1.7e-213 746.1 508 73.0
Aqoxy5G04298 Aquilegia oxysepala HOM05D005847 ORTHO05D007143 1.1e-212 743.4 518 71.4
DCAR_006499 Daucus carota HOM05D005847 ORTHO05D007143 1.1e-212 743.4 503 73.0
FAN08G0147 Fragaria x ananassa HOM05D005847 ORTHO05D007143 1.1e-212 743.4 506 71.9
CAN.G567.67 Capsicum annuum HOM05D005847 ORTHO05D007143 4.3e-212 741.5 505 72.7
CANSAT21G1860 Cannabis sativa HOM05D005847 ORTHO05D007143 1.2e-211 740.0 517 72.0
FAN13G1107 Fragaria x ananassa HOM05D005847 ORTHO05D007143 2.1e-211 739.2 510 72.0
TWI81G0154 Tripterygium wilfordii HOM05D005847 ORTHO05D007143 4.7e-211 738.0 507 71.6
VMungo1127G1163 Vigna mungo HOM05D005847 ORTHO05D007143 8.1e-211 737.3 519 69.7
Ca_24013_v3 Cicer arietinum L. HOM05D005847 ORTHO05D007143 1.1e-210 736.9 510 72.0
PGSC0003DMG400012250 Solanum tuberosum HOM05D005847 ORTHO05D007143 1.1e-210 736.9 519 71.5
ClCG01G001660 Citrullus lanatus HOM05D005847 ORTHO05D007143 1.8e-210 736.1 564 66.8
FvH4_5g11440 Fragaria vesca HOM05D005847 ORTHO05D007143 1.2e-209 733.4 510 71.4
Hund18289 Selenicereus undatus HOM05D005847 ORTHO05D007143 1.5e-209 733.0 505 70.5
Sc01g0010500 Simmondsia chinensis HOM05D005847 ORTHO05D007143 1.5e-209 733.0 504 71.0
MELO3C005771.2 Cucumis melo HOM05D005847 ORTHO05D007143 5.8e-209 731.1 509 70.7
FAN18G1068 Fragaria x ananassa HOM05D005847 ORTHO05D007143 2.2e-208 729.2 510 70.8
Medtr8g040700 Medicago truncatula HOM05D005847 ORTHO05D007143 2.9e-208 728.8 506 71.1
Lalb_Chr13g0298981 Lupinus albus HOM05D005847 ORTHO05D007143 1.4e-207 726.5 516 69.6
FAN04G0204 Fragaria x ananassa HOM05D005847 ORTHO05D007143 1.9e-207 726.1 510 70.4
Phvul.011G200000 Phaseolus vulgaris HOM05D005847 ORTHO05D007143 4.1e-207 724.9 519 68.2
TPR.G8535 Trifolium pratense HOM05D005847 ORTHO05D007143 6.0e-206 721.1 485 73.2
Glyma.13G191700 Glycine max HOM05D005847 ORTHO05D007143 1.3e-205 719.9 525 68.0
ATR0757G021 Amborella trichopoda HOM05D005847 ORTHO05D007143 8.6e-205 717.2 497 73.2
COL.COLO4_10763 Corchorus olitorius HOM05D005847 ORTHO05D007143 2.1e-203 712.6 504 70.8
Peaxi162Scf00074g00363 Petunia axillaris HOM05D005847 ORTHO05D007143 5.2e-202 708.0 507 71.0
PSO017G1852 Papaver somniferum HOM05D005847 ORTHO05D007143 1.5e-201 706.4 534 68.2
HanXRQChr13g0415001 Helianthus annuus HOM05D005847 ORTHO05D007143 4.1e-199 698.4 509 68.0
THA.LOC104809314 Tarenaya hassleriana HOM05D005847 ORTHO05D007143 2.1e-198 696.0 505 69.1
Os07g0297300 Oryza sativa ssp. japonica HOM05D005847 ORTHO05D007143 6.6e-197 691.0 514 66.0
Lj1g0001744 Lotus japonicus HOM05D005847 ORTHO05D007143 8.6e-197 690.6 592 61.5
Sabra01G0063100 Salix brachista HOM05D005847 ORTHO05D007143 3.6e-195 685.3 505 68.1
Zm00001eb021260 Zea mays HOM05D005847 ORTHO05D007143 3.1e-194 682.2 515 65.6
HPP92_003273 Vanilla planifolia HOM05D005847 ORTHO05D007143 3.8e-192 675.2 514 66.0
ECA240G1801 Erigeron canadensis HOM05D005847 ORTHO05D007143 4.2e-191 671.8 539 62.2
CSS0040838 Camellia sinensis var. sinensis HOM05D005847 ORTHO05D007143 2.1e-190 669.5 398 83.2
Aa31LG2G1600 Aethionema arabicum HOM05D005847 ORTHO05D007143 2.8e-187 659.1 524 62.8
vmacro11522 Vaccinium macrocarpon HOM05D005847 ORTHO05D007143 3.1e-186 655.6 554 62.8
AL2G10160 Arabidopsis lyrata HOM05D005847 ORTHO05D007143 6.9e-186 654.4 509 64.4
AT1G64600 Arabidopsis thaliana HOM05D005847 ORTHO05D007143 1.5e-185 653.3 512 64.1
Migut.E00656 Erythranthe guttata HOM05D005847 ORTHO05D007143 3.4e-185 652.1 537 62.4
Carub.0002s0014 Capsella rubella HOM05D005847 ORTHO05D007143 7.1e-183 644.4 535 62.2
Sp2g00130 Schrenkiella parvula HOM05D005847 ORTHO05D007143 2.1e-182 642.9 516 63.0
AUR62007027 Chenopodium quinoa HOM05D005847 ORTHO05D007143 1.3e-181 640.2 492 66.3
BcaB07g31478 Brassica carinata HOM05D005847 ORTHO05D007143 1.3e-179 633.6 523 62.0
SGA_v2.0_scaffold159G37696 Striga asiatica HOM05D005847 ORTHO05D007143 1.3e-179 633.6 502 64.5
BcaC04g22588 Brassica carinata HOM05D005847 ORTHO05D007143 3.7e-179 632.1 515 62.1
C09p17640 Brassica napus HOM05D005847 ORTHO05D007143 3.7e-179 632.1 515 62.1
BolC9t54656H Brassica oleracea HOM05D005847 ORTHO05D007143 3.7e-179 632.1 515 62.1
A09p14540 Brassica napus HOM05D005847 ORTHO05D007143 4.0e-178 628.6 515 61.9
BraA09t37102Z Brassica rapa HOM05D005847 ORTHO05D007143 4.0e-178 628.6 515 61.9
Thhalv10023366m.g Eutrema salsugineum HOM05D005847 ORTHO05D007143 6.9e-178 627.9 561 58.8
arahy.Tifrunner.gnm1.ann1.PR6ST2 Arachis hypogaea HOM05D005847 ORTHO05D007143 3.0e-173 612.5 464 66.6
arahy.Tifrunner.gnm1.ann1.HI9AVU Arachis hypogaea HOM05D005847 ORTHO05D007143 7.4e-172 607.8 457 67.0
unitig_21.g20386 Utricularia gibba HOM05D005847 ORTHO05D007143 8.7e-165 584.3 501 59.3
Nitab4.5_0002728g0010 Nicotiana tabacum HOM05D005847 ORTHO05D007143 2.8e-163 579.3 365 78.4
AUR62019890 Chenopodium quinoa HOM05D005847 ORTHO05D007143 6.9e-162 574.7 403 70.2
Lsat_1_v5_gn_6_83620 Lactuca sativa HOM05D005847 ORTHO05D007143 9.4e-151 537.7 354 73.7
Rhsim02G0249100 Rhododendron simsii HOM05D005847 ORTHO05D007143 5.0e-136 488.8 570 50.4
Nitab4.5_0006880g0020 Nicotiana tabacum HOM05D005847 ORTHO05D007143 4.7e-134 482.3 465 58.9
Oeu058016.1 Olea europaea HOM05D005847 ORTHO05D007143 8.0e-126 454.9 508 52.4
Ah.12g052990 Amaranthus hybridus HOM05D005847 ORTHO05D007143 5.7e-124 448.7 544 47.1
RcHm_v2.0_Chr7g0186411 Rosa chinensis HOM05D005847 ORTHO05D007143 1.0e-120 438.0 275 77.5
Nitab4.5_0002027g0040 Nicotiana tabacum HOM05D005847 ORTHO05D007143 7.0e-114 415.2 493 51.9
Mapoly0031s0174 Marchantia polymorpha HOM05D005847 ORTHO05D007143 3.0e-109 399.8 515 44.3
Pp3c9_6890 Physcomitrium patens HOM05D005847 ORTHO05D007143 9.2e-106 388.3 508 43.5
CDE04G1283 Ceratophyllum demersum HOM05D005847 ORTHO05D007143 2.3e-104 383.6 255 74.9
MSTRG.26906 Avicennia marina HOM05D005847 ORTHO05D007143 4.0e-101 372.9 255 74.5
MSTRG.15574 Avicennia marina HOM05D005847 ORTHO05D007143 4.3e-95 352.8 260 66.9
Nn1g00324 Nelumbo nucifera HOM05D005847 ORTHO05D007143 4.3e-95 352.8 222 87.4
SMO119G0297 Selaginella moellendorffii HOM05D005847 ORTHO05D007143 1.3e-88 331.3 558 34.9
RcHm_v2.0_Chr7g0186431 Rosa chinensis HOM05D005847 ORTHO05D007143 8.9e-85 318.5 236 67.8
QL10p010267 Quercus lobata HOM05D005847 ORTHO05D007143 3.5e-81 306.6 202 73.8
SHI06935 Sapria himalayana HOM05D005847 ORTHO05D007143 2.5e-79 300.4 459 44.4
Cpa.g.sc15.20 Carica papaya HOM05D005847 ORTHO05D007143 9.0e-77 292.0 210 70.5
CARHR046320 Cardamine hirsuta HOM05D005847 ORTHO05D007143 1.1e-71 275.0 226 58.8
SMO115G0010 Selaginella moellendorffii HOM05D005847 ORTHO05D007143 1.1e-66 258.5 260 46.5
Aqoxy5G04303 Aquilegia oxysepala HOM05D005847 ORTHO05D007143 1.9e-63 247.7 221 62.0
AagrBONN_evm.TU.Sc2ySwM_228.3279 Anthoceros agrestis HOM05D005847 ORTHO05D007143 4.9e-59 233.0 246 48.4
SEGI_09534 Sequoiadendron giganteum HOM05D005847 ORTHO05D007143 7.9e-57 225.7 178 66.3
SMO116G0437 Selaginella moellendorffii HOM05D005847 ORTHO05D007143 2.7e-49 200.7 477 29.1
Cpa.g.c33268 Carica papaya HOM05D005847 ORTHO05D007143 6.7e-48 196.1 146 65.8
RcHm_v2.0_Chr7g0205571 Rosa chinensis HOM05D005847 ORTHO05D007143 2.2e-46 191.0 248 46.0
CDE04G2319 Ceratophyllum demersum HOM05D005847 ORTHO05D007143 3.7e-46 190.3 180 55.6
Nn1g00325 Nelumbo nucifera HOM05D005847 ORTHO05D007143 1.2e-41 175.3 95 93.7
CBR_g978 Chara braunii HOM05D005847 ORTHO05D007143 1.5e-39 168.3 401 32.7
RcHm_v2.0_Chr7g0205551 Rosa chinensis HOM05D005847 ORTHO05D007143 2.0e-36 157.9 258 39.1
Atru.chr1.1468 Acer truncatum HOM05D005847 ORTHO05D007143 8.8e-32 142.5 105 69.5
AUR62019891 Chenopodium quinoa HOM05D005847 ORTHO05D007143 8.8e-32 142.5 111 64.0
Cpa.g.sc15.22 Carica papaya HOM05D005847 ORTHO05D007143 4.8e-30 136.7 82 78.0
MCO09G139 Micromonas commoda HOM05D005847 ORTHO05D007143 6.3e-30 136.3 522 26.2
Cre05.g237600 Chlamydomonas reinhardtii HOM05D005847 ORTHO05D007143 7.4e-23 112.8 165 41.2
Os10g0520950 Oryza sativa ssp. japonica HOM05D005847 ORTHO05D007143 1.4e-21 108.6 121 51.2
QL02p028460 Quercus lobata HOM05D005847 ORTHO05D007143 2.6e-20 104.4 128 45.3
Lj3g0011757 Lotus japonicus HOM05D005847 ORTHO05D007143 7.2e-18 96.3 182 36.8
Medtr8g040720 Medicago truncatula HOM05D005847 ORTHO05D007143 5.2e-16 90.1 52 71.2
QL02p028464 Quercus lobata HOM05D005847 ORTHO05D007143 1.1e-10 72.4 82 51.2
Nitab4.5_0000109g0320 Nicotiana tabacum HOM05D005847 ORTHO05D007143 2.2e-06 58.2 70 51.4
Medtr8g040530 Medicago truncatula HOM05D005847 ORTHO05D007143 2.8e-06 57.8 80 41.2
Sabra03G0104700 Salix brachista HOM05D005847 ORTHO05D007143 4.8e-06 57.0 60 55.0


User provided reference genes

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