Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn8g41224 Nelumbo nucifera HOM05D005225 ORTHO05D006830 4.5e-283 977.2 484 100.0
Dinv34052 Davidia involucrata HOM05D005225 ORTHO05D006830 3.2e-225 785.0 478 78.9
RcHm_v2.0_Chr7g0212391 Rosa chinensis HOM05D005225 ORTHO05D006830 1.2e-216 756.5 478 76.4
Atru.chr11.1603 Acer truncatum HOM05D005225 ORTHO05D006830 3.6e-216 755.0 478 75.3
Ciclev10031260m.g Citrus clementina HOM05D005225 ORTHO05D006830 1.8e-215 752.7 478 75.5
Cc11_g11810 Coffea canephora HOM05D005225 ORTHO05D006830 1.8e-215 752.7 477 75.9
Cfa008863 Carpinus fangiana HOM05D005225 ORTHO05D006830 1.2e-214 750.0 478 74.3
CSS0003869 Camellia sinensis var. sinensis HOM05D005225 ORTHO05D006830 2.0e-214 749.2 478 74.1
MBI16_g03095_MAGBIO Magnolia biondii HOM05D005225 ORTHO05D006830 3.4e-214 748.4 481 76.5
CAN.G707.21 Capsicum annuum HOM05D005225 ORTHO05D006830 4.4e-214 748.0 478 75.1
Thecc.02G327800 Theobroma cacao HOM05D005225 ORTHO05D006830 9.8e-214 746.9 478 74.7
FvH4_4g10620 Fragaria vesca HOM05D005225 ORTHO05D006830 4.1e-212 741.5 478 73.8
FAN12G0824 Fragaria x ananassa HOM05D005225 ORTHO05D006830 4.1e-212 741.5 478 74.1
PSO017G1582 Papaver somniferum HOM05D005225 ORTHO05D006830 4.1e-212 741.5 479 74.9
Hma1.2p1_0051F.1_g029440 Hydrangea macrophylla HOM05D005225 ORTHO05D006830 5.4e-212 741.1 479 74.3
FAN12G2267 Fragaria x ananassa HOM05D005225 ORTHO05D006830 2.7e-211 738.8 478 73.8
PGSC0003DMG400028362 Solanum tuberosum HOM05D005225 ORTHO05D006830 2.7e-211 738.8 478 74.3
QL03p073750 Quercus lobata HOM05D005225 ORTHO05D006830 5.9e-211 737.6 478 73.0
Sabra08G0073600 Salix brachista HOM05D005225 ORTHO05D006830 5.0e-210 734.6 479 73.9
Potri.008G097400 Populus trichocarpa HOM05D005225 ORTHO05D006830 8.6e-210 733.8 479 73.9
Prupe.1G566200 Prunus persica HOM05D005225 ORTHO05D006830 8.6e-210 733.8 478 73.0
Sopen05g006880 Solanum pennellii HOM05D005225 ORTHO05D006830 8.6e-210 733.8 478 73.8
Cpa.g.sc1.153 Carica papaya HOM05D005225 ORTHO05D006830 3.3e-209 731.9 458 76.0
QL02p092646 Quercus lobata HOM05D005225 ORTHO05D006830 4.3e-209 731.5 478 72.6
Gorai.008G176100 Gossypium raimondii HOM05D005225 ORTHO05D006830 2.8e-208 728.8 479 73.3
Peaxi162Scf00175g00052 Petunia axillaris HOM05D005225 ORTHO05D006830 2.8e-208 728.8 450 77.3
Haze_11886 Corylus avellana HOM05D005225 ORTHO05D006830 3.6e-208 728.4 451 76.5
COL.COLO4_27858 Corchorus olitorius HOM05D005225 ORTHO05D006830 4.7e-208 728.0 456 75.9
Duzib251G0330 Durio zibethinus HOM05D005225 ORTHO05D006830 6.1e-208 727.6 477 73.6
MD16G1281400 Malus domestica HOM05D005225 ORTHO05D006830 2.0e-206 722.6 453 75.7
Rhsim09G0126000 Rhododendron simsii HOM05D005225 ORTHO05D006830 2.0e-206 722.6 449 76.4
HanXRQChr12g0375111 Helianthus annuus HOM05D005225 ORTHO05D006830 7.5e-206 720.7 477 72.5
Eucgr.F03034 Eucalyptus grandis HOM05D005225 ORTHO05D006830 2.2e-205 719.2 479 73.3
Hund25165 Selenicereus undatus HOM05D005225 ORTHO05D006830 4.9e-205 718.0 480 71.5
CANSAT80G1664 Cannabis sativa HOM05D005225 ORTHO05D006830 1.1e-204 716.8 476 71.8
TWI79G0826 Tripterygium wilfordii HOM05D005225 ORTHO05D006830 1.8e-204 716.1 478 70.9
arahy.Tifrunner.gnm1.ann1.BYWX90 Arachis hypogaea HOM05D005225 ORTHO05D006830 4.1e-204 714.9 450 74.0
arahy.Tifrunner.gnm1.ann1.W47LMS Arachis hypogaea HOM05D005225 ORTHO05D006830 4.1e-204 714.9 450 74.0
Lalb_Chr04g0255551 Lupinus albus HOM05D005225 ORTHO05D006830 2.0e-203 712.6 450 75.3
PGR102G0586 Punica granatum HOM05D005225 ORTHO05D006830 2.0e-203 712.6 477 71.3
arahy.Tifrunner.gnm1.ann1.1IY8V2 Arachis hypogaea HOM05D005225 ORTHO05D006830 3.5e-203 711.8 450 73.8
arahy.Tifrunner.gnm1.ann1.BAL663 Arachis hypogaea HOM05D005225 ORTHO05D006830 3.5e-203 711.8 450 73.8
Lj3P1029T28 Lonicera japonica HOM05D005225 ORTHO05D006830 1.0e-202 710.3 447 76.5
Medtr5g044980 Medicago truncatula HOM05D005225 ORTHO05D006830 1.7e-202 709.5 448 75.2
TPR.G23155 Trifolium pratense HOM05D005225 ORTHO05D006830 1.7e-202 709.5 450 74.7
vmacro01311 Vaccinium macrocarpon HOM05D005225 ORTHO05D006830 3.0e-202 708.8 449 75.3
TWI75G0045 Tripterygium wilfordii HOM05D005225 ORTHO05D006830 8.6e-202 707.2 478 70.9
DCAR_004043 Daucus carota HOM05D005225 ORTHO05D006830 1.5e-201 706.4 436 77.3
Manes.10G001000 Manihot esculenta HOM05D005225 ORTHO05D006830 1.5e-201 706.4 478 72.8
Aqoxy6G03037 Aquilegia oxysepala HOM05D005225 ORTHO05D006830 4.3e-201 704.9 411 80.8
TPR.G23738 Trifolium pratense HOM05D005225 ORTHO05D006830 7.3e-201 704.1 450 74.2
Glyma.02G120400 Glycine max HOM05D005225 ORTHO05D006830 1.2e-200 703.4 452 74.1
HanXRQChr03g0092011 Helianthus annuus HOM05D005225 ORTHO05D006830 1.6e-200 703.0 476 72.5
Psat2g131720 Pisum sativum HOM05D005225 ORTHO05D006830 1.6e-200 703.0 449 74.6
Lj2g0003273 Lotus japonicus HOM05D005225 ORTHO05D006830 1.4e-199 699.9 450 73.6
Ca_05000_v3 Cicer arietinum L. HOM05D005225 ORTHO05D006830 1.8e-199 699.5 450 72.9
VMungo1215G0332 Vigna mungo HOM05D005225 ORTHO05D006830 5.2e-199 698.0 449 74.2
Ah.03g138790 Amaranthus hybridus HOM05D005225 ORTHO05D006830 8.9e-199 697.2 477 71.3
ECA246G3793 Erigeron canadensis HOM05D005225 ORTHO05D006830 8.9e-199 697.2 477 70.9
TAR629G1144 Trochodendron aralioides HOM05D005225 ORTHO05D006830 2.0e-198 696.0 478 74.1
Lsat_1_v5_gn_3_53701 Lactuca sativa HOM05D005225 ORTHO05D006830 5.8e-198 694.5 477 70.4
GSVIVG01012238001 Vitis vinifera HOM05D005225 ORTHO05D006830 3.7e-197 691.8 478 71.1
EL10Ac6g15018 Beta vulgaris HOM05D005225 ORTHO05D006830 1.9e-196 689.5 475 70.7
Sc04g0007480 Simmondsia chinensis HOM05D005225 ORTHO05D006830 4.1e-196 688.3 478 69.2
Sed0018680 Sechium edule HOM05D005225 ORTHO05D006830 6.0e-195 684.5 451 72.1
CsaV3_5G008630 Cucumis sativus L. HOM05D005225 ORTHO05D006830 1.7e-194 682.9 478 69.2
AUR62003082 Chenopodium quinoa HOM05D005225 ORTHO05D006830 5.0e-194 681.4 478 68.6
SalBow2G3373 Salvia bowleyana HOM05D005225 ORTHO05D006830 5.0e-194 681.4 477 67.3
MSTRG.7736 Avicennia marina HOM05D005225 ORTHO05D006830 1.9e-193 679.5 478 68.6
MELO3C020077.2 Cucumis melo HOM05D005225 ORTHO05D006830 1.9e-193 679.5 456 71.1
AL7G22240 Arabidopsis lyrata HOM05D005225 ORTHO05D006830 2.5e-193 679.1 453 70.6
AT4G30000 Arabidopsis thaliana HOM05D005225 ORTHO05D006830 2.5e-193 679.1 453 70.4
CARHR237920 Cardamine hirsuta HOM05D005225 ORTHO05D006830 2.5e-193 679.1 453 70.4
THA.LOC104821999 Tarenaya hassleriana HOM05D005225 ORTHO05D006830 3.3e-193 678.7 475 68.6
Carub.0007s1065 Capsella rubella HOM05D005225 ORTHO05D006830 4.3e-193 678.3 447 70.9
ClCG11G000950 Citrullus lanatus HOM05D005225 ORTHO05D006830 1.2e-192 676.8 442 71.9
Lalb_Chr10g0098931 Lupinus albus HOM05D005225 ORTHO05D006830 6.2e-192 674.5 450 73.1
Thhalv10024845m.g Eutrema salsugineum HOM05D005225 ORTHO05D006830 8.1e-192 674.1 460 70.2
HPP92_017786 Vanilla planifolia HOM05D005225 ORTHO05D006830 1.2e-190 670.2 448 70.5
Aa31LG2G20560 Aethionema arabicum HOM05D005225 ORTHO05D006830 2.0e-190 669.5 447 69.1
Gohir.A12G160100 Gossypium hirsutum HOM05D005225 ORTHO05D006830 2.6e-190 669.1 479 68.5
BraA01t00759Z Brassica rapa HOM05D005225 ORTHO05D006830 2.2e-189 666.0 455 68.4
BcaC09g51778 Brassica carinata HOM05D005225 ORTHO05D006830 3.7e-189 665.2 456 68.0
C01p09090 Brassica napus HOM05D005225 ORTHO05D006830 3.7e-189 665.2 456 68.0
BolC1t00900H Brassica oleracea HOM05D005225 ORTHO05D006830 3.7e-189 665.2 456 68.0
Nitab4.5_0007734g0040 Nicotiana tabacum HOM05D005225 ORTHO05D006830 3.7e-189 665.2 411 77.1
Migut.L01174 Erythranthe guttata HOM05D005225 ORTHO05D006830 4.9e-189 664.8 479 66.4
Sp7g27800 Schrenkiella parvula HOM05D005225 ORTHO05D006830 6.4e-189 664.5 453 68.9
Nitab4.5_0000231g0060 Nicotiana tabacum HOM05D005225 ORTHO05D006830 1.4e-188 663.3 411 76.6
A01p08120 Brassica napus HOM05D005225 ORTHO05D006830 3.2e-188 662.1 455 67.7
Gohir.D12G163500 Gossypium hirsutum HOM05D005225 ORTHO05D006830 7.1e-188 661.0 479 67.6
Thhalv10019460m.g Eutrema salsugineum HOM05D005225 ORTHO05D006830 2.3e-186 656.0 437 71.6
CiPaw.06G093200 Carya illinoinensis HOM05D005225 ORTHO05D006830 1.9e-185 652.9 411 74.9
Solyc05g012090.4 Solanum lycopersicum HOM05D005225 ORTHO05D006830 1.1e-183 647.1 418 73.7
Os07g0618500 Oryza sativa ssp. japonica HOM05D005225 ORTHO05D006830 2.4e-183 646.0 436 69.5
AT1G69190 Arabidopsis thaliana HOM05D005225 ORTHO05D006830 4.0e-183 645.2 442 70.8
Sp5g24250 Schrenkiella parvula HOM05D005225 ORTHO05D006830 1.2e-182 643.7 452 68.4
unitig_22.g6894 Utricularia gibba HOM05D005225 ORTHO05D006830 8.4e-181 637.5 475 64.2
ATR0827G107 Amborella trichopoda HOM05D005225 ORTHO05D006830 4.1e-180 635.2 444 68.0
Zm00001eb319990 Zea mays HOM05D005225 ORTHO05D006830 9.2e-180 634.0 472 63.6
Oeu055095.2 Olea europaea HOM05D005225 ORTHO05D006830 6.6e-178 627.9 411 72.7
SEGI_35565 Sequoiadendron giganteum HOM05D005225 ORTHO05D006830 2.1e-176 622.9 477 63.1
CSS0031076 Camellia sinensis var. sinensis HOM05D005225 ORTHO05D006830 1.5e-174 616.7 445 67.4
FAN17G1346 Fragaria x ananassa HOM05D005225 ORTHO05D006830 9.9e-174 614.0 376 77.1
AL2G28280 Arabidopsis lyrata HOM05D005225 ORTHO05D006830 3.8e-173 612.1 424 69.6
SHI01330 Sapria himalayana HOM05D005225 ORTHO05D006830 4.0e-167 592.0 471 63.3
FAN07G1983 Fragaria x ananassa HOM05D005225 ORTHO05D006830 1.4e-164 583.6 357 77.3
Aa31sc367G20 Aethionema arabicum HOM05D005225 ORTHO05D006830 1.9e-164 583.2 438 64.8
SGA_v2.0_scaffold85G26791 Striga asiatica HOM05D005225 ORTHO05D006830 3.0e-162 575.9 445 64.3
Nn2g15478 Nelumbo nucifera HOM05D005225 ORTHO05D006830 3.3e-161 572.4 298 95.3
Actinidia00572 Actinidia chinensis HOM05D005225 ORTHO05D006830 1.3e-160 570.5 461 63.3
MD06G1024100 Malus domestica HOM05D005225 ORTHO05D006830 2.7e-155 552.7 411 66.2
AagrBONN_evm.TU.Sc2ySwM_362.716 Anthoceros agrestis HOM05D005225 ORTHO05D006830 2.9e-149 532.7 447 55.9
Mapoly0021s0079 Marchantia polymorpha HOM05D005225 ORTHO05D006830 6.0e-147 525.0 439 56.3
Pp3c27_4310 Physcomitrium patens HOM05D005225 ORTHO05D006830 1.1e-145 520.8 445 57.5
SEGI_04122 Sequoiadendron giganteum HOM05D005225 ORTHO05D006830 4.1e-143 512.3 477 54.5
Glyma.01G062200 Glycine max HOM05D005225 ORTHO05D006830 1.9e-132 476.9 316 73.4
SMO358G0268 Selaginella moellendorffii HOM05D005225 ORTHO05D006830 6.1e-131 471.9 456 52.6
RcHm_v2.0_Chr2g0139541 Rosa chinensis HOM05D005225 ORTHO05D006830 2.6e-129 466.5 287 78.7
CDE04G0587 Ceratophyllum demersum HOM05D005225 ORTHO05D006830 2.9e-125 453.0 293 72.4
AUR62007898 Chenopodium quinoa HOM05D005225 ORTHO05D006830 1.4e-124 450.7 313 68.1
CBR_g61480 Chara braunii HOM05D005225 ORTHO05D006830 1.0e-117 427.9 439 50.3
Phvul.007G262101 Phaseolus vulgaris HOM05D005225 ORTHO05D006830 4.4e-113 412.5 264 75.4
Phvul.001G131450 Phaseolus vulgaris HOM05D005225 ORTHO05D006830 5.7e-113 412.1 264 75.8
HanXRQChr04g0120931 Helianthus annuus HOM05D005225 ORTHO05D006830 1.2e-107 394.4 250 74.0
SGA_v2.0_scaffold45G17115 Striga asiatica HOM05D001733 ORTHO05D001882 3.1e-103 379.8 360 55.0
Cre10.g428550 Chlamydomonas reinhardtii HOM05D005225 ORTHO05D006830 5.8e-89 332.4 579 37.0
MCO11G893 Micromonas commoda HOM05D005225 ORTHO05D006830 1.1e-87 328.2 524 39.5
PRCOL_00003253 Prasinoderma coloniale HOM05D005225 ORTHO05D006830 5.4e-79 299.3 435 41.4
Nn4g23480 Nelumbo nucifera HOM05D005225 ORTHO05D006830 1.2e-78 298.1 155 91.0
Cfa024768 Carpinus fangiana HOM05D005225 ORTHO05D124687 2.6e-73 280.4 464 37.5
LjContig00272g0016968 Lotus japonicus HOM05D005225 ORTHO05D006830 1.6e-54 218.0 213 50.7
SGA_v2.0_scaffold16G07808 Striga asiatica HOM05D005225 ORTHO05D006830 3.1e-50 203.8 240 47.9
RcHm_v2.0_Chr2g0139531 Rosa chinensis HOM05D005225 ORTHO05D006830 5.6e-44 183.0 175 54.3
Nn4g23481 Nelumbo nucifera HOM05D005225 ORTHO05D006830 7.4e-44 182.6 108 87.0
Actinidia16153 Actinidia chinensis HOM05D005225 ORTHO05D006830 1.7e-32 144.8 125 60.0
HanXRQChr15g0477151 Helianthus annuus HOM05D005225 ORTHO05D044060 2.2e-32 144.4 98 70.4
TAR371G0727 Trochodendron aralioides HOM05D005225 ORTHO05D006830 1.2e-30 138.7 216 41.7
HanXRQChr04g0120941 Helianthus annuus HOM05D005225 ORTHO05D048239 7.9e-30 136.0 87 72.4
SGA_v2.0_scaffold16G07809 Striga asiatica HOM05D005225 ORTHO05D048239 7.9e-30 136.0 119 57.1
AUR62007899 Chenopodium quinoa HOM05D005225 ORTHO05D044060 1.6e-22 111.7 80 66.2
QL06p011620 Quercus lobata HOM05D005225 ORTHO05D006830 1.4e-21 108.6 68 82.4
Medtr0076s0050 Medicago truncatula HOM05D005225 ORTHO05D265034 6.3e-19 99.8 90 57.8
CARHR062340 Cardamine hirsuta HOM05D005225 ORTHO05D006830 2.6e-09 67.8 40 75.0
Thecc.02G327500 Theobroma cacao HOM05D005225 ORTHO05D407879 1.2e-06 58.9 37 73.0


User provided reference genes

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