Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn8g41089 Nelumbo nucifera HOM05D004803 ORTHO05D005653 9.4e-53 209.9 106 100.0
Nn8g40644 Nelumbo nucifera HOM05D004803 ORTHO05D005653 4.3e-21 104.8 56 92.9
TAR636G2654 Trochodendron aralioides HOM05D004803 ORTHO05D005653 3.6e-20 101.7 61 85.2
COL.COLO4_24021 Corchorus olitorius HOM05D004803 ORTHO05D005653 1.4e-19 99.8 61 80.3
Duzib106G0817 Durio zibethinus HOM05D004803 ORTHO05D005653 1.4e-19 99.8 61 80.3
Gohir.D13G117900 Gossypium hirsutum HOM05D004803 ORTHO05D005653 1.8e-19 99.4 61 80.3
Gorai.013G132400 Gossypium raimondii HOM05D004803 ORTHO05D005653 1.8e-19 99.4 61 80.3
Thecc.07G084900 Theobroma cacao HOM05D004803 ORTHO05D005653 2.3e-19 99.0 61 80.3
Gohir.A13G115000 Gossypium hirsutum HOM05D004803 ORTHO05D005653 4.0e-19 98.2 61 78.7
Manes.13G122700 Manihot esculenta HOM05D004803 ORTHO05D005653 4.0e-19 98.2 63 77.8
CSS0040541 Camellia sinensis var. sinensis HOM05D004803 ORTHO05D005653 5.2e-19 97.8 61 78.7
Glyma.05G221400 Glycine max HOM05D004803 ORTHO05D005653 1.2e-18 96.7 61 78.7
Glyma.08G027900 Glycine max HOM05D004803 ORTHO05D005653 1.5e-18 96.3 61 77.0
Cpa.g.sc116.72 Carica papaya HOM05D004803 ORTHO05D005653 3.4e-18 95.1 61 75.4
Phvul.002G303100 Phaseolus vulgaris HOM05D004803 ORTHO05D005653 7.5e-18 94.0 61 77.0
Atru.chr7.977 Acer truncatum HOM05D004803 ORTHO05D005653 9.8e-18 93.6 61 75.4
MBI13_g31565_MAGBIO Magnolia biondii HOM05D004803 ORTHO05D005653 9.8e-18 93.6 62 79.0
Lsat_1_v5_gn_7_59621 Lactuca sativa HOM05D004803 ORTHO05D005653 1.3e-17 93.2 61 80.3
Lsat_1_v5_gn_7_59641 Lactuca sativa HOM05D004803 ORTHO05D005653 1.3e-17 93.2 61 80.3
MD13G1234800 Malus domestica HOM05D004803 ORTHO05D005653 1.3e-17 93.2 62 74.2
CiPaw.15G155100 Carya illinoinensis HOM05D004803 ORTHO05D005653 2.9e-17 92.0 63 77.8
FAN17G0329 Fragaria x ananassa HOM05D004803 ORTHO05D005653 2.9e-17 92.0 62 74.2
Duzib128G1472 Durio zibethinus HOM05D004803 ORTHO05D005653 3.7e-17 91.7 61 73.8
Ca_17414_v3 Cicer arietinum L. HOM05D004803 ORTHO05D005653 4.9e-17 91.3 61 70.5
Hma1.2p1_0284F.1_g113820 Hydrangea macrophylla HOM05D004803 ORTHO05D005653 4.9e-17 91.3 61 75.4
Prupe.1G065700 Prunus persica HOM05D004803 ORTHO05D005653 4.9e-17 91.3 62 71.0
FvH4_4g06260 Fragaria vesca HOM05D004803 ORTHO05D005653 8.3e-17 90.5 62 71.0
FAN12G1038 Fragaria x ananassa HOM05D004803 ORTHO05D005653 8.3e-17 90.5 62 71.0
FAN22G0315 Fragaria x ananassa HOM05D004803 ORTHO05D005653 8.3e-17 90.5 62 71.0
FAN07G1450 Fragaria x ananassa HOM05D004803 ORTHO05D005653 1.1e-16 90.1 62 71.0
Manes.12G104200 Manihot esculenta HOM05D004803 ORTHO05D005653 1.1e-16 90.1 63 73.0
Ciclev10023194m.g Citrus clementina HOM05D004803 ORTHO05D005653 1.4e-16 89.7 61 72.1
MD16G1239600 Malus domestica HOM05D004803 ORTHO05D005653 1.4e-16 89.7 62 72.6
Lalb_Chr16g0390871 Lupinus albus HOM05D004803 ORTHO05D005653 2.4e-16 89.0 61 72.1
RcHm_v2.0_Chr4g0397981 Rosa chinensis HOM05D004803 ORTHO05D005653 2.4e-16 89.0 62 67.7
Cfa020735 Carpinus fangiana HOM05D004803 ORTHO05D005653 4.1e-16 88.2 63 76.2
TPR.G25472 Trifolium pratense HOM05D004803 ORTHO05D005653 5.4e-16 87.8 61 70.5
Potri.018G146602 Populus trichocarpa HOM05D004803 ORTHO05D005653 7.1e-16 87.4 63 69.8
CANSAT80G0011 Cannabis sativa HOM05D004803 ORTHO05D005653 1.2e-15 86.7 62 72.6
MBI11_g11974_MAGBIO Magnolia biondii HOM05D004803 ORTHO05D005653 1.2e-15 86.7 47 83.0
Ciclev10003057m.g Citrus clementina HOM05D004803 ORTHO05D005653 1.6e-15 86.3 61 73.8
Medtr2g067370 Medicago truncatula HOM05D004803 ORTHO05D005653 1.6e-15 86.3 59 67.8
Potri.006G077500 Populus trichocarpa HOM05D004803 ORTHO05D005653 2.1e-15 85.9 63 68.3
QL11p009265 Quercus lobata HOM05D004803 ORTHO05D005653 2.1e-15 85.9 63 69.8
TWI14G1226 Tripterygium wilfordii HOM05D004803 ORTHO05D005653 2.1e-15 85.9 63 71.4
Potri.018G145502 Populus trichocarpa HOM05D004803 ORTHO05D005653 2.7e-15 85.5 63 68.3
ClCG06G014040 Citrullus lanatus HOM05D004803 ORTHO05D005653 3.5e-15 85.1 62 67.7
Sed0007901 Sechium edule HOM05D004803 ORTHO05D005653 3.5e-15 85.1 62 67.7
HanXRQChr14g0437441 Helianthus annuus HOM05D004803 ORTHO05D005653 7.8e-15 84.0 62 71.0
MD15G1094200 Malus domestica HOM05D004803 ORTHO05D005653 7.8e-15 84.0 65 64.6
Medtr3g055500 Medicago truncatula HOM05D004803 ORTHO05D005653 1.0e-14 83.6 87 50.6
Psat7g021680 Pisum sativum HOM05D004803 ORTHO05D005653 1.7e-14 82.8 61 65.6
vmacro20779 Vaccinium macrocarpon HOM05D004803 ORTHO05D005653 3.0e-14 82.0 58 70.7
Nn1g04967 Nelumbo nucifera HOM05D004803 ORTHO05D005653 3.9e-14 81.6 54 75.9
Thhalv10028124m.g Eutrema salsugineum HOM05D004803 ORTHO05D005653 5.1e-14 81.3 60 65.0
HPP92_006365 Vanilla planifolia HOM05D004803 ORTHO05D005653 5.1e-14 81.3 61 65.6
MD12G1085900 Malus domestica HOM05D004803 ORTHO05D005653 6.6e-14 80.9 62 69.4
Medtr3g462060 Medicago truncatula HOM05D004803 ORTHO05D005653 6.6e-14 80.9 59 62.7
SalBow5G1850 Salvia bowleyana HOM05D004803 ORTHO05D005653 6.6e-14 80.9 67 70.1
Migut.B00847 Erythranthe guttata HOM05D004803 ORTHO05D005653 8.6e-14 80.5 67 70.1
TWI39G0014 Tripterygium wilfordii HOM05D004803 ORTHO05D005653 8.6e-14 80.5 63 68.3
Hma1.2p1_0418F.1_g149310 Hydrangea macrophylla HOM05D004803 ORTHO05D005653 1.5e-13 79.7 60 66.7
Lsat_1_v5_gn_7_59661 Lactuca sativa HOM05D004803 ORTHO05D005653 1.9e-13 79.3 61 68.9
Lj4g0006469 Lotus japonicus HOM05D004803 ORTHO05D005653 1.9e-13 79.3 68 63.2
Lalb_Chr09g0331931 Lupinus albus HOM05D004803 ORTHO05D005653 1.9e-13 79.3 55 70.9
Atru.chr9.1510 Acer truncatum HOM05D004803 ORTHO05D005653 4.3e-13 78.2 54 70.4
Zm00001eb358730 Zea mays HOM05D004803 ORTHO05D005653 5.6e-13 77.8 68 60.3
BcaC08g44541 Brassica carinata HOM05D004803 ORTHO05D005653 7.3e-13 77.4 52 65.4
PGR083G2338 Punica granatum HOM05D004803 ORTHO05D005653 7.3e-13 77.4 52 73.1
Nitab4.5_0000413g0050 Nicotiana tabacum HOM05D004803 ORTHO05D005653 1.2e-12 76.6 66 63.6
Nitab4.5_0005014g0030 Nicotiana tabacum HOM05D004803 ORTHO05D005653 1.2e-12 76.6 66 63.6
Aqoxy7G02691 Aquilegia oxysepala HOM05D004803 ORTHO05D005653 2.1e-12 75.9 58 65.5
BcaB02g07882 Brassica carinata HOM05D004803 ORTHO05D005653 3.6e-12 75.1 52 61.5
CAN.G54.3 Capsicum annuum HOM05D004803 ORTHO05D005653 4.7e-12 74.7 66 62.1
Nitab4.5_0004188g0060 Nicotiana tabacum HOM05D004803 ORTHO05D005653 4.7e-12 74.7 66 62.1
Nitab4.5_0005411g0060 Nicotiana tabacum HOM05D004803 ORTHO05D005653 4.7e-12 74.7 66 62.1
PGSC0003DMG400021021 Solanum tuberosum HOM05D004803 ORTHO05D005653 4.7e-12 74.7 66 60.6
AT5G41685 Arabidopsis thaliana HOM05D004803 ORTHO05D005653 6.2e-12 74.3 52 59.6
MELO3C019213.2 Cucumis melo HOM05D004803 ORTHO05D005653 6.2e-12 74.3 62 59.7
Sed0005262 Sechium edule HOM05D004803 ORTHO05D005653 6.2e-12 74.3 57 63.2
Sopen07g005800 Solanum pennellii HOM05D004803 ORTHO05D005653 6.2e-12 74.3 66 60.6
Sopen07g005820 Solanum pennellii HOM05D004803 ORTHO05D005653 6.2e-12 74.3 66 60.6
PGSC0003DMG402013687 Solanum tuberosum HOM05D004803 ORTHO05D005653 6.2e-12 74.3 67 62.7
CsaV3_2G035410 Cucumis sativus L. HOM05D004803 ORTHO05D005653 8.1e-12 73.9 62 58.1
Solyc05g047390.1 Solanum lycopersicum HOM05D004803 ORTHO05D005653 8.1e-12 73.9 67 61.2
Sopen05g027700 Solanum pennellii HOM05D004803 ORTHO05D005653 8.1e-12 73.9 67 61.2
Carub.0007s3380 Capsella rubella HOM05D004803 ORTHO05D005653 1.4e-11 73.2 63 55.6
AUR62025705 Chenopodium quinoa HOM05D004803 ORTHO05D005653 1.4e-11 73.2 52 61.5
ECA240G2554 Erigeron canadensis HOM05D004803 ORTHO05D005653 1.8e-11 72.8 68 64.7
AL7G47670 Arabidopsis lyrata HOM05D004803 ORTHO05D005653 2.3e-11 72.4 63 54.0
Cc00_g00470 Coffea canephora HOM05D004803 ORTHO05D005653 2.3e-11 72.4 68 57.4
MD06G1130200 Malus domestica HOM05D004803 ORTHO05D005653 2.3e-11 72.4 59 64.4
Peaxi162Scf00320g00053 Petunia axillaris HOM05D004803 ORTHO05D005653 2.3e-11 72.4 67 64.2
AUR62001322 Chenopodium quinoa HOM05D004803 ORTHO05D005653 4.0e-11 71.6 52 59.6
Medtr3g061970 Medicago truncatula HOM05D004803 ORTHO05D005653 4.0e-11 71.6 58 56.9
PSO063G0965 Papaver somniferum HOM05D004803 ORTHO05D005653 4.0e-11 71.6 63 55.6
BcaB06g27645 Brassica carinata HOM05D004803 ORTHO05D005653 5.2e-11 71.2 54 61.1
Aa31LG9G390 Aethionema arabicum HOM05D004803 ORTHO05D005653 6.8e-11 70.9 59 52.5
BcaC02g08933 Brassica carinata HOM05D004803 ORTHO05D005653 8.9e-11 70.5 54 61.1
C04p48720 Brassica napus HOM05D004803 ORTHO05D005653 8.9e-11 70.5 54 61.1
C04p48770 Brassica napus HOM05D004803 ORTHO05D005653 8.9e-11 70.5 54 61.1
C04p48830 Brassica napus HOM05D004803 ORTHO05D005653 8.9e-11 70.5 54 61.1
BolC4t26463H Brassica oleracea HOM05D004803 ORTHO05D005653 8.9e-11 70.5 54 61.1
CARHR272970 Cardamine hirsuta HOM05D004803 ORTHO05D005653 8.9e-11 70.5 47 61.7
A04p14790 Brassica napus HOM05D004803 ORTHO05D005653 1.5e-10 69.7 54 59.3
Os01g0626300 Oryza sativa ssp. japonica HOM05D004803 ORTHO05D005653 1.5e-10 69.7 69 58.0
unitig_899.g15187 Utricularia gibba HOM05D004803 ORTHO05D005653 1.5e-10 69.7 68 54.4
Aa31LG2G1260 Aethionema arabicum HOM05D004803 ORTHO05D005653 2.0e-10 69.3 67 56.7
Solyc07g015970.3 Solanum lycopersicum HOM05D004803 ORTHO05D005653 2.6e-10 68.9 60 65.0
BcaC04g22640 Brassica carinata HOM05D004803 ORTHO05D005653 3.4e-10 68.6 60 56.7
A04p18870 Brassica napus HOM05D004803 ORTHO05D005653 3.4e-10 68.6 54 59.3
BolC4t26468H Brassica oleracea HOM05D004803 ORTHO05D005653 3.4e-10 68.6 48 60.4
THA.LOC104817698 Tarenaya hassleriana HOM05D004803 ORTHO05D005653 3.4e-10 68.6 66 54.5
A04p14850 Brassica napus HOM05D004803 ORTHO05D005653 7.6e-10 67.4 54 61.1
BraA04t17117Z Brassica rapa HOM05D004803 ORTHO05D005653 7.6e-10 67.4 54 61.1
Nitab4.5_0010123g0030 Nicotiana tabacum HOM05D004803 ORTHO05D005653 7.6e-10 67.4 58 65.5
BolC9t54609H Brassica oleracea HOM05D004803 ORTHO05D005653 9.9e-10 67.0 60 56.7
BraA04t17123Z Brassica rapa HOM05D004803 ORTHO05D005653 1.3e-09 66.6 54 61.1
Carub.0002s0057 Capsella rubella HOM05D004803 ORTHO05D005653 1.3e-09 66.6 66 56.1
DCAR_019792 Daucus carota HOM05D004803 ORTHO05D005653 1.7e-09 66.2 68 50.0
Sc12g0011260 Simmondsia chinensis HOM05D004803 ORTHO05D005653 1.7e-09 66.2 38 65.8
Ah.08g217890 Amaranthus hybridus HOM05D004803 ORTHO05D005653 2.9e-09 65.5 55 50.9
Os01g0732000 Oryza sativa ssp. japonica HOM05D004803 ORTHO05D005653 2.9e-09 65.5 62 50.0
THA.LOC104823604 Tarenaya hassleriana HOM05D004803 ORTHO05D005653 2.9e-09 65.5 64 53.1
Pp3c14_20040 Physcomitrium patens HOM05D004803 ORTHO05D005653 1.4e-08 63.2 35 71.4
Sp7g00380 Schrenkiella parvula HOM05D004803 ORTHO05D005653 1.4e-08 63.2 38 65.8
C09p18010 Brassica napus HOM05D004803 ORTHO05D005653 1.9e-08 62.8 63 52.4
BcaC04g22540 Brassica carinata HOM05D004803 ORTHO05D005653 2.4e-08 62.4 63 50.8
BcaC04g22545 Brassica carinata HOM05D004803 ORTHO05D005653 2.4e-08 62.4 63 50.8
BcaC04g22642 Brassica carinata HOM05D004803 ORTHO05D005653 2.4e-08 62.4 63 50.8
BcaC04g22643 Brassica carinata HOM05D004803 ORTHO05D005653 2.4e-08 62.4 63 50.8
BolC9t54698H Brassica oleracea HOM05D004803 ORTHO05D005653 2.4e-08 62.4 63 50.8
CARHR231140 Cardamine hirsuta HOM05D004803 ORTHO05D005653 2.4e-08 62.4 49 57.1
Pp3c17_18760 Physcomitrium patens HOM05D004803 ORTHO05D005653 3.2e-08 62.0 35 68.6
Sp7g21690 Schrenkiella parvula HOM05D004803 ORTHO05D005653 3.2e-08 62.0 58 48.3
C04p48860 Brassica napus HOM05D004803 ORTHO05D005653 4.1e-08 61.6 51 60.8
BraA09t37134Z Brassica rapa HOM05D004803 ORTHO05D005653 4.1e-08 61.6 60 50.0
SMO167G0035 Selaginella moellendorffii HOM05D004803 ORTHO05D005653 4.1e-08 61.6 48 62.5
A09p14890 Brassica napus HOM05D004803 ORTHO05D005653 5.4e-08 61.2 61 49.2
CARHR046710 Cardamine hirsuta HOM05D004803 ORTHO05D005653 5.4e-08 61.2 63 54.0
AT1G64220 Arabidopsis thaliana HOM05D004803 ORTHO05D005653 7.1e-08 60.8 66 51.5
Eucgr.H00014 Eucalyptus grandis HOM05D004803 ORTHO05D005653 7.1e-08 60.8 55 54.5
AL2G10780 Arabidopsis lyrata HOM05D004803 ORTHO05D005653 9.2e-08 60.5 38 65.8
BcaB07g31446 Brassica carinata HOM05D004803 ORTHO05D005653 9.2e-08 60.5 63 47.6
CBR_g29720 Chara braunii HOM05D004803 ORTHO05D005653 9.2e-08 60.5 44 61.4
CBR_g29719 Chara braunii HOM05D004803 ORTHO05D005653 1.2e-07 60.1 61 47.5
Thhalv10023788m.g Eutrema salsugineum HOM05D004803 ORTHO05D005653 2.1e-07 59.3 64 51.6
Os05g0583400 Oryza sativa ssp. japonica HOM05D004803 ORTHO05D005653 2.1e-07 59.3 35 68.6
Aa31LG6G6980 Aethionema arabicum HOM05D004803 ORTHO05D005653 2.7e-07 58.9 61 44.3
Mapoly0024s0138 Marchantia polymorpha HOM05D004803 ORTHO05D005653 1.3e-06 56.6 35 71.4
BcaB07g31518 Brassica carinata HOM05D004803 ORTHO05D005653 2.3e-06 55.8 62 45.2
MBI16_g37211_MAGBIO Magnolia biondii HOM05D004803 ORTHO05D005653 8.6e-06 53.9 42 61.9


User provided reference genes

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