Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn8g41073 Nelumbo nucifera HOM05D007573 ORTHO05D009938 5.2e-34 147.1 74 100.0
ATR0751G258 Amborella trichopoda HOM05D007573 ORTHO05D009938 3.0e-21 104.8 62 79.0
TAR626G0043 Trochodendron aralioides HOM05D007573 ORTHO05D009938 8.7e-21 103.2 62 82.3
Dinv04316 Davidia involucrata HOM05D007573 ORTHO05D009938 2.8e-19 98.2 63 77.8
Dinv08308 Davidia involucrata HOM05D007573 ORTHO05D009938 2.4e-18 95.1 52 84.6
Cpa.g.sc80.44 Carica papaya HOM05D007573 ORTHO05D009938 3.1e-18 94.7 59 74.6
Hma1.2p1_0540F.1_g174720 Hydrangea macrophylla HOM05D007573 ORTHO05D009938 5.3e-18 94.0 63 73.0
Hma1.2p1_0540F.1_g174725 Hydrangea macrophylla HOM05D007573 ORTHO05D009938 5.3e-18 94.0 63 73.0
Thecc.07G080300 Theobroma cacao HOM05D007573 ORTHO05D009938 6.9e-18 93.6 63 73.0
CDE03G0215 Ceratophyllum demersum HOM05D001610 ORTHO05D001585 1.5e-17 92.4 57 73.7
Haze_09458 Corylus avellana HOM05D007573 ORTHO05D009938 2.0e-17 92.0 57 71.9
PSO017G6785 Papaver somniferum HOM05D007573 ORTHO05D009938 2.0e-17 92.0 56 76.8
VMungo1383G0060 Vigna mungo HOM05D007573 ORTHO05D009938 2.0e-17 92.0 60 70.0
Phvul.011G213100 Phaseolus vulgaris HOM05D007573 ORTHO05D009938 5.8e-17 90.5 56 75.0
COL.COLO4_09423 Corchorus olitorius HOM05D007573 ORTHO05D009938 1.3e-16 89.4 62 72.6
Aqoxy7G03752 Aquilegia oxysepala HOM05D007573 ORTHO05D009938 1.7e-16 89.0 56 76.8
AL3G27940 Arabidopsis lyrata HOM05D007573 ORTHO05D009938 1.7e-16 89.0 58 75.9
CSS0004701 Camellia sinensis var. sinensis HOM05D007573 ORTHO05D009938 1.7e-16 89.0 56 76.8
CARHR090450 Cardamine hirsuta HOM05D007573 ORTHO05D009938 1.7e-16 89.0 58 74.1
Glyma.12G150700 Glycine max HOM05D007573 ORTHO05D009938 1.7e-16 89.0 60 68.3
AT3G15395 Arabidopsis thaliana HOM05D007573 ORTHO05D009938 2.2e-16 88.6 63 73.0
AL230U10020 Arabidopsis lyrata HOM05D007573 ORTHO05D013670 2.9e-16 88.2 56 78.6
Cc06_g21640 Coffea canephora HOM05D007573 ORTHO05D009938 2.9e-16 88.2 62 69.4
Glyma.06G246700 Glycine max HOM05D007573 ORTHO05D009938 2.9e-16 88.2 62 66.1
ClCG10G006860 Citrullus lanatus HOM05D007573 ORTHO05D009938 3.8e-16 87.8 63 68.3
Ciclev10010140m.g Citrus clementina HOM05D007573 ORTHO05D009938 3.8e-16 87.8 57 71.9
CiPaw.12G120200 Carya illinoinensis HOM05D007573 ORTHO05D009938 4.9e-16 87.4 59 69.5
Thhalv10021902m.g Eutrema salsugineum HOM05D007573 ORTHO05D009938 4.9e-16 87.4 58 74.1
Carub.0003s1512 Capsella rubella HOM05D007573 ORTHO05D009938 6.4e-16 87.0 58 75.9
Duzib213G0732 Durio zibethinus HOM05D007573 ORTHO05D009938 6.4e-16 87.0 59 69.5
Gohir.A01G065200 Gossypium hirsutum HOM05D007573 ORTHO05D009938 8.4e-16 86.7 63 68.3
Manes.03G112266 Manihot esculenta HOM05D007573 ORTHO05D009938 8.4e-16 86.7 63 68.3
MSTRG.15220 Avicennia marina HOM05D007573 ORTHO05D009938 1.1e-15 86.3 54 74.1
Atru.chr2.2713 Acer truncatum HOM05D007573 ORTHO05D009938 1.4e-15 85.9 63 65.1
Aa31LG8G2630 Aethionema arabicum HOM05D007573 ORTHO05D009938 1.9e-15 85.5 55 74.5
Sed0027924 Sechium edule HOM05D007573 ORTHO05D009938 1.9e-15 85.5 63 65.1
Gorai.002G072400 Gossypium raimondii HOM05D007573 ORTHO05D009938 2.4e-15 85.1 52 75.0
C05p51770 Brassica napus HOM05D007573 ORTHO05D009938 3.2e-15 84.7 54 74.1
BolC5t33863H Brassica oleracea HOM05D007573 ORTHO05D009938 3.2e-15 84.7 54 74.1
TWI39G0607 Tripterygium wilfordii HOM05D007573 ORTHO05D009938 3.2e-15 84.7 54 72.2
A03p39300 Brassica napus HOM05D007573 ORTHO05D009938 4.2e-15 84.3 52 76.9
C03p47670 Brassica napus HOM05D007573 ORTHO05D009938 4.2e-15 84.3 52 76.9
BraA03t13080Z Brassica rapa HOM05D003356 ORTHO05D004362 4.2e-15 84.3 52 76.9
CiPaw.08G146300 Carya illinoinensis HOM05D007573 ORTHO05D009938 5.4e-15 84.0 51 74.5
Lalb_Chr19g0134301 Lupinus albus HOM05D007573 ORTHO05D009938 5.4e-15 84.0 63 65.1
HPP92_024073 Vanilla planifolia HOM05D007573 ORTHO05D009938 5.4e-15 84.0 63 63.5
BcaB06g29571 Brassica carinata HOM05D007573 ORTHO05D009938 9.3e-15 83.2 53 73.6
Medtr8g043400 Medicago truncatula HOM05D007573 ORTHO05D009938 1.6e-14 82.4 63 63.5
Psat4g143240 Pisum sativum HOM05D007573 ORTHO05D009938 2.1e-14 82.0 59 62.7
Potri.001G402000 Populus trichocarpa HOM05D007573 ORTHO05D009938 2.1e-14 82.0 52 73.1
Prupe.4G184300 Prunus persica HOM05D007573 ORTHO05D009938 2.1e-14 82.0 52 69.2
TWI77G0001 Tripterygium wilfordii HOM05D007573 ORTHO05D009938 2.1e-14 82.0 61 65.6
MELO3C016521.2 Cucumis melo HOM05D007573 ORTHO05D009938 2.7e-14 81.6 58 60.3
Lj3g0024326 Lotus japonicus HOM05D007573 ORTHO05D009938 3.5e-14 81.3 63 63.5
RcHm_v2.0_Chr5g0034341 Rosa chinensis HOM05D007573 ORTHO05D009938 3.5e-14 81.3 51 72.5
CsaV3_3G006210 Cucumis sativus L. HOM05D007573 ORTHO05D009938 6.0e-14 80.5 58 58.6
MD00G1089500 Malus domestica HOM05D007573 ORTHO05D009938 6.0e-14 80.5 56 64.3
CANSAT54G1030 Cannabis sativa HOM05D007573 ORTHO05D009938 1.0e-13 79.7 51 68.6
Nitab4.5_0003688g0030 Nicotiana tabacum HOM05D007573 ORTHO05D009938 1.0e-13 79.7 55 65.5
Nitab4.5_0003769g0010 Nicotiana tabacum HOM05D007573 ORTHO05D009938 1.0e-13 79.7 55 65.5
FAN04G1519 Fragaria x ananassa HOM05D007573 ORTHO05D009938 1.3e-13 79.3 51 68.6
FAN18G1355 Fragaria x ananassa HOM05D007573 ORTHO05D009938 1.3e-13 79.3 51 68.6
FAN18G3111 Fragaria x ananassa HOM05D007573 ORTHO05D009938 1.3e-13 79.3 51 68.6
THA.LOC104810481 Tarenaya hassleriana HOM05D007573 ORTHO05D009938 3.0e-13 78.2 58 65.5
Lalb_Chr03g0030571 Lupinus albus HOM05D007573 ORTHO05D009938 3.9e-13 77.8 62 58.1
Solyc07g063250.3 Solanum lycopersicum HOM05D007573 ORTHO05D009938 5.1e-13 77.4 55 63.6
BcaC01g03875 Brassica carinata HOM05D007573 ORTHO05D009938 6.7e-13 77.0 60 66.7
MBI15_g18737_MAGBIO Magnolia biondii HOM05D007573 ORTHO05D009938 1.1e-12 76.3 48 72.9
Os02g0197400 Oryza sativa ssp. japonica HOM05D007573 ORTHO05D009938 1.1e-12 76.3 63 55.6
Peaxi162Scf00069g01326 Petunia axillaris HOM05D007573 ORTHO05D009938 1.1e-12 76.3 59 62.7
PGR031G1039 Punica granatum HOM05D007573 ORTHO05D009938 1.1e-12 76.3 54 68.5
EL10Ac3g05359 Beta vulgaris HOM05D007573 ORTHO05D009938 2.5e-12 75.1 54 63.0
Hund27723 Selenicereus undatus HOM05D007573 ORTHO05D009938 2.5e-12 75.1 54 68.5
Hund27736 Selenicereus undatus HOM05D007573 ORTHO05D009938 2.5e-12 75.1 54 68.5
Lsat_1_v5_gn_7_105220 Lactuca sativa HOM05D007573 ORTHO05D009938 4.3e-12 74.3 42 78.6
C07p18110 Brassica napus HOM05D003404 ORTHO05D009938 2.1e-11 72.0 43 74.4
Actinidia09676 Actinidia chinensis HOM05D007573 ORTHO05D009938 5.3e-10 67.4 50 74.0
Migut.M00851 Erythranthe guttata HOM05D007573 ORTHO05D009938 3.4e-09 64.7 48 60.4
Potri.006G225232 Populus trichocarpa HOM05D007573 ORTHO05D009938 8.4e-08 60.1 50 68.0
SHI14860 Sapria himalayana HOM05D007573 ORTHO05D009938 4.2e-07 57.8 59 49.2
MD03G1224700 Malus domestica HOM05D007573 ORTHO05D009938 5.5e-07 57.4 51 56.9
SalBow7G4816 Salvia bowleyana HOM05D007573 ORTHO05D009938 5.5e-07 57.4 92 41.3
SEGI_00037 Sequoiadendron giganteum HOM05D007573 ORTHO05D009938 9.3e-07 56.6 53 45.3


User provided reference genes

Program Settings