Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn8g41003 Nelumbo nucifera HOM05D005569 ORTHO05D007052 1.3e-94 349.7 179 100.0
TAR626G0082 Trochodendron aralioides HOM05D005569 ORTHO05D007052 2.2e-70 269.2 165 83.6
Hma1.2p1_1111F.1_g258450 Hydrangea macrophylla HOM05D005569 ORTHO05D007052 2.3e-67 259.2 176 76.7
PSO170G0292 Papaver somniferum HOM05D005569 ORTHO05D007052 3.9e-67 258.5 165 78.2
PSO063G3520 Papaver somniferum HOM05D005569 ORTHO05D007052 8.7e-67 257.3 163 79.1
Aqoxy7G02714 Aquilegia oxysepala HOM05D005569 ORTHO05D007052 2.4e-64 249.2 163 79.1
arahy.Tifrunner.gnm1.ann1.DT0EHL Arachis hypogaea HOM05D005569 ORTHO05D007052 1.2e-63 246.9 160 77.5
arahy.Tifrunner.gnm1.ann1.0XD544 Arachis hypogaea HOM05D005569 ORTHO05D007052 2.0e-63 246.1 160 77.5
RcHm_v2.0_Chr2g0149331 Rosa chinensis HOM05D005569 ORTHO05D007052 2.6e-63 245.7 159 77.4
FvH4_6g36900 Fragaria vesca HOM05D005569 ORTHO05D007052 5.8e-63 244.6 159 76.7
FAN14G0087 Fragaria x ananassa HOM05D000810 ORTHO05D003737 5.8e-63 244.6 159 76.7
CDE07G0675 Ceratophyllum demersum HOM05D005569 ORTHO05D007052 7.6e-63 244.2 168 74.4
FAN09G0120 Fragaria x ananassa HOM05D005569 ORTHO05D007052 1.3e-62 243.4 159 77.4
Prupe.3G023400 Prunus persica HOM05D005569 ORTHO05D007052 1.7e-62 243.0 169 75.1
Lsat_1_v5_gn_5_137201 Lactuca sativa HOM05D005569 ORTHO05D007052 6.5e-62 241.1 177 68.4
Ciclev10032913m.g Citrus clementina HOM05D005569 ORTHO05D007052 1.1e-61 240.4 159 78.6
MD17G1161700 Malus domestica HOM05D005569 ORTHO05D007052 1.4e-61 240.0 153 79.7
GSVIVG01029554001 Vitis vinifera HOM05D005569 ORTHO05D007052 1.4e-61 240.0 156 74.4
Ca_20982_v3 Cicer arietinum L. HOM05D005569 ORTHO05D007052 2.5e-61 239.2 160 73.8
Gohir.A05G114900 Gossypium hirsutum HOM05D005569 ORTHO05D007052 2.5e-61 239.2 170 72.9
CDE04G0659 Ceratophyllum demersum HOM05D005569 ORTHO05D007052 3.2e-61 238.8 163 74.8
Medtr4g005340 Medicago truncatula HOM05D005569 ORTHO05D007052 5.5e-61 238.0 164 72.0
Nitab4.5_0001708g0020 Nicotiana tabacum HOM05D005569 ORTHO05D007052 7.1e-61 237.7 163 76.1
Nitab4.5_0002354g0080 Nicotiana tabacum HOM05D005569 ORTHO05D007052 7.1e-61 237.7 155 76.1
Thecc.06G056000 Theobroma cacao HOM05D005569 ORTHO05D007052 7.1e-61 237.7 165 73.9
MD09G1166000 Malus domestica HOM05D005569 ORTHO05D007052 1.6e-60 236.5 163 74.8
CAN.G1445.2 Capsicum annuum HOM05D005569 ORTHO05D007052 2.7e-60 235.7 158 75.9
Gohir.D05G115300 Gossypium hirsutum HOM05D005569 ORTHO05D007052 3.5e-60 235.3 163 73.6
Gorai.009G119400 Gossypium raimondii HOM05D005569 ORTHO05D007052 3.5e-60 235.3 163 73.6
HanXRQChr10g0311221 Helianthus annuus HOM05D005569 ORTHO05D007052 4.6e-60 235.0 158 74.1
Nitab4.5_0007226g0010 Nicotiana tabacum HOM05D005569 ORTHO05D007052 6.0e-60 234.6 158 77.2
Lj3g0021821 Lotus japonicus HOM05D005569 ORTHO05D007052 7.9e-60 234.2 160 73.1
Actinidia00647 Actinidia chinensis HOM05D005569 ORTHO05D007052 1.8e-59 233.0 160 76.2
Sed0017383 Sechium edule HOM05D005569 ORTHO05D007052 1.8e-59 233.0 167 70.1
Sopen08g026060 Solanum pennellii HOM05D005569 ORTHO05D007052 1.8e-59 233.0 158 75.9
HanXRQChr12g0359721 Helianthus annuus HOM05D005569 ORTHO05D007052 2.3e-59 232.6 158 72.2
Eucgr.J00350 Eucalyptus grandis HOM05D005569 ORTHO05D007052 3.9e-59 231.9 150 76.7
PGSC0003DMG400001840 Solanum tuberosum HOM05D005569 ORTHO05D007052 5.1e-59 231.5 158 74.7
MELO3C002923.2 Cucumis melo HOM05D005569 ORTHO05D007052 6.7e-59 231.1 166 70.5
Manes.06G179601 Manihot esculenta HOM05D005569 ORTHO05D007052 8.7e-59 230.7 162 74.1
Sc15g0001130 Simmondsia chinensis HOM05D005569 ORTHO05D007052 8.7e-59 230.7 162 71.0
Lj6P639T26 Lonicera japonica HOM05D005569 ORTHO05D007052 1.1e-58 230.3 148 77.7
AUR62025672 Chenopodium quinoa HOM05D005569 ORTHO05D007052 1.5e-58 229.9 158 72.8
Potri.008G004200 Populus trichocarpa HOM05D005569 ORTHO05D007052 1.5e-58 229.9 163 71.2
CSS0046788 Camellia sinensis var. sinensis HOM05D005569 ORTHO05D007052 1.9e-58 229.6 160 71.9
CsaV3_5G025600 Cucumis sativus L. HOM05D005569 ORTHO05D007052 2.5e-58 229.2 163 70.6
CiPaw.02G129100 Carya illinoinensis HOM05D005569 ORTHO05D007052 3.3e-58 228.8 165 72.1
ClCG09G020780 Citrullus lanatus HOM05D005569 ORTHO05D007052 3.3e-58 228.8 165 70.9
ECA234G1813 Erigeron canadensis HOM05D005569 ORTHO05D007052 3.3e-58 228.8 152 74.3
CAN.G308.17 Capsicum annuum HOM05D005569 ORTHO05D007052 5.7e-58 228.0 155 74.2
FAN05G2575 Fragaria x ananassa HOM05D005569 ORTHO05D007052 7.4e-58 227.6 188 64.4
Psat7g265160 Pisum sativum HOM05D005569 ORTHO05D007052 7.4e-58 227.6 161 70.2
TPR.G38774 Trifolium pratense HOM05D005569 ORTHO05D007052 1.3e-57 226.9 160 70.6
COL.COLO4_31145 Corchorus olitorius HOM05D000810 ORTHO05D003737 2.1e-57 226.1 161 70.8
Hund05672 Selenicereus undatus HOM05D005569 ORTHO05D007052 3.7e-57 225.3 158 71.5
Sopen06g022820 Solanum pennellii HOM05D005569 ORTHO05D007052 8.2e-57 224.2 155 71.0
HPP92_023863 Vanilla planifolia HOM05D005569 ORTHO05D007052 8.2e-57 224.2 162 71.0
Cpa.g.sc176.7 Carica papaya HOM05D005569 ORTHO05D007052 1.1e-56 223.8 163 72.4
Solyc08g077470.4 Solanum lycopersicum HOM05D005569 ORTHO05D007052 1.8e-56 223.0 141 78.7
vmacro12582 Vaccinium macrocarpon HOM05D005569 ORTHO05D007052 3.1e-56 222.2 152 75.0
PGSC0003DMG400026509 Solanum tuberosum HOM05D005569 ORTHO05D007052 6.9e-56 221.1 155 71.0
TWI75G0478 Tripterygium wilfordii HOM05D005569 ORTHO05D007052 1.5e-55 219.9 162 70.4
CiPaw.01G208600 Carya illinoinensis HOM05D005569 ORTHO05D007052 7.6e-55 217.6 161 70.8
VMungo0331G1663 Vigna mungo HOM05D005569 ORTHO05D007052 7.6e-55 217.6 158 70.3
AL2G39310 Arabidopsis lyrata HOM05D005569 ORTHO05D007052 1.3e-54 216.9 144 77.1
AT1G78895 Arabidopsis thaliana HOM05D005569 ORTHO05D007052 3.8e-54 215.3 144 76.4
BcaB02g07184 Brassica carinata HOM05D005569 ORTHO05D007052 6.5e-54 214.5 144 75.0
MSTRG.9559 Avicennia marina HOM05D005569 ORTHO05D007052 8.4e-54 214.2 155 69.7
THA.LOC104808103 Tarenaya hassleriana HOM05D005569 ORTHO05D007052 1.1e-53 213.8 149 73.8
FAN02G3798 Fragaria x ananassa HOM05D005569 ORTHO05D007052 1.4e-53 213.4 149 75.2
QL05p088862 Quercus lobata HOM05D005569 ORTHO05D007052 1.9e-53 213.0 157 72.6
Thhalv10019242m.g Eutrema salsugineum HOM05D005569 ORTHO05D007052 5.5e-53 211.5 144 75.0
Sp5g33910 Schrenkiella parvula HOM05D005569 ORTHO05D007052 5.5e-53 211.5 144 74.3
MSTRG.4523 Avicennia marina HOM05D005569 ORTHO05D007052 9.3e-53 210.7 153 71.9
Migut.D00888 Erythranthe guttata HOM05D005569 ORTHO05D007052 1.6e-52 209.9 152 69.1
Glyma.07G001900 Glycine max HOM05D005569 ORTHO05D007052 2.7e-52 209.1 162 67.3
SGA_v2.0_scaffold4G02105 Striga asiatica HOM05D005569 ORTHO05D007052 4.6e-52 208.4 152 69.1
Nitab4.5_0003757g0060 Nicotiana tabacum HOM05D005569 ORTHO05D007052 6.1e-52 208.0 121 84.3
CARHR072480 Cardamine hirsuta HOM05D005569 ORTHO05D007052 7.9e-52 207.6 144 73.6
Carub.0002s2572 Capsella rubella HOM05D005569 ORTHO05D007052 2.3e-51 206.1 139 77.0
Lalb_Chr01g0011651 Lupinus albus HOM05D005569 ORTHO05D007052 2.3e-51 206.1 160 66.2
A07p27440 Brassica napus HOM05D005569 ORTHO05D007052 3.9e-51 205.3 145 73.8
BraA07t30385Z Brassica rapa HOM05D005569 ORTHO05D007052 3.9e-51 205.3 145 73.8
SEGI_33936 Sequoiadendron giganteum HOM05D005569 ORTHO05D007052 3.9e-51 205.3 158 69.0
BcaC08g45404 Brassica carinata HOM05D005569 ORTHO05D007052 5.1e-51 204.9 145 73.8
C06p30360 Brassica napus HOM05D005569 ORTHO05D007052 5.1e-51 204.9 145 73.8
Aa31LG4G2110 Aethionema arabicum HOM05D005569 ORTHO05D007052 1.1e-50 203.8 139 77.0
BcaC07g41383 Brassica carinata HOM05D005569 ORTHO05D007052 2.5e-50 202.6 139 74.8
BolC6t38199H Brassica oleracea HOM05D005569 ORTHO05D007052 2.5e-50 202.6 145 73.1
Oeu049628.2 Olea europaea HOM05D005569 ORTHO05D007052 4.3e-50 201.8 124 80.6
PGR031G1139 Punica granatum HOM05D005569 ORTHO05D007052 9.7e-50 200.7 170 62.9
Sp1g14960 Schrenkiella parvula HOM05D005569 ORTHO05D007052 1.3e-49 200.3 154 69.5
BraA09t41445Z Brassica rapa HOM05D005569 ORTHO05D007052 1.6e-49 199.9 142 73.9
Carub.0001s1656 Capsella rubella HOM05D005569 ORTHO05D007052 8.2e-49 197.6 137 75.2
BcaC07g41456 Brassica carinata HOM05D005569 ORTHO05D007052 1.1e-48 197.2 142 73.2
BolC8t51973H Brassica oleracea HOM05D005569 ORTHO05D007052 1.1e-48 197.2 142 73.2
EL10Ac7g18137 Beta vulgaris HOM05D005569 ORTHO05D007052 2.0e-47 193.0 122 78.7
Zm00001eb414080 Zea mays HOM05D005569 ORTHO05D007052 2.6e-47 192.6 158 64.6
Actinidia31124 Actinidia chinensis HOM05D005569 ORTHO05D007052 4.5e-47 191.8 131 76.3
AT1G16825 Arabidopsis thaliana HOM05D005569 ORTHO05D007052 4.5e-47 191.8 137 73.0
CARHR017290 Cardamine hirsuta HOM05D005569 ORTHO05D007052 4.5e-47 191.8 141 69.5
AL1G28990 Arabidopsis lyrata HOM05D005569 ORTHO05D007052 5.9e-47 191.4 136 73.5
Hund18590 Selenicereus undatus HOM05D005569 ORTHO05D007052 1.9e-45 186.4 151 64.9
Phvul.010G164400 Phaseolus vulgaris HOM05D005569 ORTHO05D007052 2.5e-45 186.0 157 61.1
SalBow4G0561 Salvia bowleyana HOM05D005569 ORTHO05D007052 9.4e-45 184.1 173 57.8
Peaxi162Scf00084g00024 Petunia axillaris HOM05D005569 ORTHO05D007052 6.1e-44 181.4 112 82.1
MBI16_g18210_MAGBIO Magnolia biondii HOM05D005569 ORTHO05D007052 7.9e-44 181.0 108 84.3
A09p60680 Brassica napus HOM05D005569 ORTHO05D007052 6.7e-43 177.9 128 74.2
C08p44280 Brassica napus HOM05D005569 ORTHO05D007052 4.3e-42 175.3 128 73.4
CANSAT01G2461 Cannabis sativa HOM05D005569 ORTHO05D007052 5.7e-42 174.9 115 74.8
SEGI_27689 Sequoiadendron giganteum HOM05D005569 ORTHO05D007052 5.7e-42 174.9 155 61.3
AUR62001332 Chenopodium quinoa HOM05D005569 ORTHO05D007052 2.8e-41 172.6 126 72.2
DCAR_028944 Daucus carota HOM05D005569 ORTHO05D007052 4.8e-41 171.8 109 79.8
Haze_16187 Corylus avellana HOM05D005569 ORTHO05D007052 8.2e-41 171.0 105 81.0
Os08g0225100 Oryza sativa ssp. japonica HOM05D005569 ORTHO05D007052 8.5e-38 161.0 126 66.7
Sabra08G0001800 Salix brachista HOM05D005569 ORTHO05D007052 1.2e-36 157.1 103 78.6
Cc04_g00060 Coffea canephora HOM05D005569 ORTHO05D007052 1.6e-36 156.8 110 73.6
SMO215G0002 Selaginella moellendorffii HOM05D005569 ORTHO05D007052 6.1e-36 154.8 118 66.1
ATR0626G016 Amborella trichopoda HOM05D005569 ORTHO05D007052 8.8e-35 151.0 106 70.8
Mapoly0045s0143 Marchantia polymorpha HOM05D005569 ORTHO05D007052 2.0e-34 149.8 154 50.0
Thhalv10009539m.g Eutrema salsugineum HOM05D005569 ORTHO05D007052 2.6e-34 149.4 101 75.2
Pp3c8_16360 Physcomitrium patens HOM05D005569 ORTHO05D007052 5.7e-34 148.3 131 57.3
Atru.chr1.2818 Acer truncatum HOM05D005569 ORTHO05D007052 5.5e-29 131.7 82 79.3
Duzib192G1047 Durio zibethinus HOM05D005569 ORTHO05D007052 8.8e-27 124.4 83 74.7
Prupe.3G058300 Prunus persica HOM05D005569 ORTHO05D007052 3.1e-24 115.9 96 67.7
Pp3c24_12140 Physcomitrium patens HOM05D005569 ORTHO05D007052 6.5e-22 108.2 97 58.8
CBR_g40779 Chara braunii HOM05D005569 ORTHO05D007052 1.2e-18 97.4 128 43.0
CBR_g49429 Chara braunii HOM05D005569 ORTHO05D007052 2.6e-18 96.3 128 41.4
Duzib235G0081 Durio zibethinus HOM05D005569 ORTHO05D007052 4.4e-18 95.5 101 57.4
BcaC07g41384 Brassica carinata HOM05D005569 ORTHO05D007052 7.5e-18 94.7 95 54.7
CBR_g41646 Chara braunii HOM05D000785 ORTHO05D000231 2.2e-17 93.2 134 38.8
HPP92_023858 Vanilla planifolia HOM05D005569 ORTHO05D007052 2.0e-15 86.7 56 73.2
unitig_899.g14763 Utricularia gibba HOM05D000070 ORTHO05D003301 2.5e-13 79.7 51 72.5
SEGI_34083 Sequoiadendron giganteum HOM05D000074 ORTHO05D000220 4.4e-10 68.9 47 72.3
C08p44240 Brassica napus HOM05D005569 ORTHO05D007052 3.1e-08 62.8 48 64.6
BolC8t51970H Brassica oleracea HOM05D005569 ORTHO05D007052 3.1e-08 62.8 48 64.6
Prupe.5G038700 Prunus persica HOM05D005569 ORTHO05D007052 5.0e-06 55.5 39 69.2


User provided reference genes

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