Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn8g40983 Nelumbo nucifera HOM05D006880 ORTHO05D008638 5.8e-71 270.8 136 100.0
Nn5g28731 Nelumbo nucifera HOM05D006880 ORTHO05D008638 7.8e-52 207.2 180 65.0
Nn3g21133 Nelumbo nucifera HOM05D006880 ORTHO05D008638 3.1e-40 168.7 154 63.0
Nn1g06089 Nelumbo nucifera HOM05D006880 ORTHO05D008638 9.0e-40 167.2 177 54.8
Aqoxy5G02095 Aquilegia oxysepala HOM05D006880 ORTHO05D008638 4.5e-39 164.9 177 54.8
PSO675G8574 Papaver somniferum HOM05D006880 ORTHO05D008638 3.0e-35 152.1 182 51.6
Oeu054906.1 Olea europaea HOM05D006880 ORTHO05D008638 5.1e-35 151.4 176 52.3
Duzib147G0678 Durio zibethinus HOM05D006880 ORTHO05D008638 1.1e-34 150.2 177 49.7
PSO541G1054 Papaver somniferum HOM05D006880 ORTHO05D008638 1.5e-34 149.8 182 51.1
TWI79G0189 Tripterygium wilfordii HOM05D006880 ORTHO05D008638 1.5e-34 149.8 181 49.7
Solyc11g005390.3 Solanum lycopersicum HOM05D006880 ORTHO05D008638 1.9e-34 149.4 176 50.6
Sopen11g001400 Solanum pennellii HOM05D006880 ORTHO05D008638 1.9e-34 149.4 176 50.6
Cpa.g.sc453.1 Carica papaya HOM05D006880 ORTHO05D008638 2.5e-34 149.1 175 49.7
PGSC0003DMG400003965 Solanum tuberosum HOM05D006880 ORTHO05D008638 3.3e-34 148.7 176 50.6
FAN19G0460 Fragaria x ananassa HOM05D006880 ORTHO05D008638 5.6e-34 147.9 180 50.0
Thecc.01G120600 Theobroma cacao HOM05D006880 ORTHO05D008638 5.6e-34 147.9 173 51.4
RcHm_v2.0_Chr2g0119191 Rosa chinensis HOM05D006880 ORTHO05D008638 9.6e-34 147.1 180 50.0
COL.COLO4_22415 Corchorus olitorius HOM05D006880 ORTHO05D008638 1.6e-33 146.4 172 51.2
Gohir.A10G083300 Gossypium hirsutum HOM05D006880 ORTHO05D008638 2.8e-33 145.6 183 48.6
Gohir.D10G105600 Gossypium hirsutum HOM05D006880 ORTHO05D008638 2.8e-33 145.6 183 48.6
Gorai.011G115200 Gossypium raimondii HOM05D006880 ORTHO05D008638 2.8e-33 145.6 183 48.6
Gorai.002G151100 Gossypium raimondii HOM05D006880 ORTHO05D008638 3.7e-33 145.2 176 47.7
FvH4_1g23610 Fragaria vesca HOM05D006880 ORTHO05D008638 4.8e-33 144.8 180 49.4
FAN26G3452 Fragaria x ananassa HOM05D006880 ORTHO05D008638 4.8e-33 144.8 180 49.4
FAN28G1236 Fragaria x ananassa HOM05D006880 ORTHO05D008638 4.8e-33 144.8 180 49.4
HanXRQChr02g0039401 Helianthus annuus HOM05D006880 ORTHO05D008638 4.8e-33 144.8 174 49.4
Prupe.6G162500 Prunus persica HOM05D006880 ORTHO05D008638 4.8e-33 144.8 180 47.8
TAR628G0678 Trochodendron aralioides HOM05D006880 ORTHO05D008638 4.8e-33 144.8 187 49.2
CiPaw.03G123600 Carya illinoinensis HOM05D006880 ORTHO05D008638 6.2e-33 144.4 178 48.9
PGR119G1657 Punica granatum HOM05D006880 ORTHO05D008638 8.2e-33 144.1 176 49.4
ECA247G1470 Erigeron canadensis HOM05D006880 ORTHO05D008638 1.1e-32 143.7 173 50.9
FAN23G3120 Fragaria x ananassa HOM05D006880 ORTHO05D008638 1.4e-32 143.3 180 49.4
CANSAT01G0776 Cannabis sativa HOM05D006880 ORTHO05D008638 1.8e-32 142.9 176 49.4
Manes.12G148400 Manihot esculenta HOM05D006880 ORTHO05D008638 1.8e-32 142.9 175 48.6
arahy.Tifrunner.gnm1.ann1.546D2B Arachis hypogaea HOM05D006880 ORTHO05D008638 3.1e-32 142.1 177 47.5
CSS0034618 Camellia sinensis var. sinensis HOM05D006880 ORTHO05D008638 4.0e-32 141.7 191 47.6
QL06p051802 Quercus lobata HOM05D006880 ORTHO05D008638 4.0e-32 141.7 178 48.9
Migut.H01108 Erythranthe guttata HOM05D006880 ORTHO05D008638 5.3e-32 141.4 173 49.1
Cc07_g17330 Coffea canephora HOM05D006880 ORTHO05D008638 9.0e-32 140.6 182 47.3
SGA_v2.0_scaffold178G39501 Striga asiatica HOM05D006880 ORTHO05D008638 9.0e-32 140.6 170 51.2
Actinidia06675 Actinidia chinensis HOM05D006880 ORTHO05D008638 1.2e-31 140.2 174 48.3
MELO3C008029.2 Cucumis melo HOM05D006880 ORTHO05D008638 1.2e-31 140.2 180 46.1
Duzib187G0911 Durio zibethinus HOM05D006880 ORTHO05D008638 2.0e-31 139.4 177 48.0
Lj2A591T43 Lonicera japonica HOM05D006880 ORTHO05D008638 2.0e-31 139.4 170 50.0
ClCG01G015680 Citrullus lanatus HOM05D006880 ORTHO05D008638 3.4e-31 138.7 181 46.4
Hma1.2p1_0006F.1_g004965 Hydrangea macrophylla HOM05D006880 ORTHO05D008638 3.4e-31 138.7 169 50.3
Hma1.2p1_0025F.1_g016260 Hydrangea macrophylla HOM05D006880 ORTHO05D008638 3.4e-31 138.7 169 50.3
Hma1.2p1_1667F.1_g296585 Hydrangea macrophylla HOM05D006880 ORTHO05D008638 3.4e-31 138.7 169 50.3
Potri.019G006500 Populus trichocarpa HOM05D006880 ORTHO05D008638 4.5e-31 138.3 180 45.0
Ciclev10026534m.g Citrus clementina HOM05D006880 ORTHO05D008638 5.8e-31 137.9 179 46.9
Lalb_Chr11g0068241 Lupinus albus HOM05D006880 ORTHO05D008638 5.8e-31 137.9 174 48.3
Phvul.009G147400 Phaseolus vulgaris HOM05D006880 ORTHO05D008638 5.8e-31 137.9 174 47.7
Sabra16G0194800 Salix brachista HOM05D006880 ORTHO05D008638 5.8e-31 137.9 178 46.6
Glyma.09G116700 Glycine max HOM05D006880 ORTHO05D008638 1.0e-30 137.1 177 46.9
Lj1g0010031 Lotus japonicus HOM05D006880 ORTHO05D008638 1.0e-30 137.1 178 44.9
CDE08G0745 Ceratophyllum demersum HOM05D006880 ORTHO05D008638 1.3e-30 136.7 168 48.8
CiPaw.04G083800 Carya illinoinensis HOM05D006880 ORTHO05D008638 1.7e-30 136.3 179 45.8
Medtr3g095480 Medicago truncatula HOM05D006880 ORTHO05D008638 1.7e-30 136.3 171 47.4
HanXRQChr05g0137731 Helianthus annuus HOM05D006880 ORTHO05D008638 2.2e-30 136.0 173 49.1
Lalb_Chr08g0238661 Lupinus albus HOM05D006880 ORTHO05D008638 2.2e-30 136.0 171 48.0
Sabra19G0018800 Salix brachista HOM05D006880 ORTHO05D008638 2.2e-30 136.0 182 44.0
Potri.001G309000 Populus trichocarpa HOM05D006880 ORTHO05D008638 2.9e-30 135.6 178 46.1
Ca_16914_v3 Cicer arietinum L. HOM05D006880 ORTHO05D008638 4.9e-30 134.8 173 46.8
Atru.chr4.544 Acer truncatum HOM05D006880 ORTHO05D008638 6.5e-30 134.4 183 44.3
Psat5g063920 Pisum sativum HOM05D006880 ORTHO05D008638 6.5e-30 134.4 175 45.7
TPR.G18722 Trifolium pratense HOM05D006880 ORTHO05D008638 6.5e-30 134.4 176 46.6
MBI02_g23402_MAGBIO Magnolia biondii HOM05D006880 ORTHO05D008638 8.4e-30 134.0 174 45.4
arahy.Tifrunner.gnm1.ann1.91R8ME Arachis hypogaea HOM05D006880 ORTHO05D008638 1.1e-29 133.7 174 46.6
Glyma.09G116500 Glycine max HOM05D006880 ORTHO05D008638 1.4e-29 133.3 174 46.6
Glyma.06G149800 Glycine max HOM05D006880 ORTHO05D008638 2.5e-29 132.5 190 46.3
Sabra19G0023300 Salix brachista HOM05D006880 ORTHO05D008638 2.5e-29 132.5 177 44.6
Sc03g0004730 Simmondsia chinensis HOM05D006880 ORTHO05D008638 3.2e-29 132.1 166 45.8
GSVIVG01026589001 Vitis vinifera HOM05D006880 ORTHO05D008638 3.2e-29 132.1 164 50.0
Gohir.D11G233000 Gossypium hirsutum HOM05D006880 ORTHO05D008638 4.2e-29 131.7 162 48.8
MD01G1016600 Malus domestica HOM05D006880 ORTHO05D008638 4.2e-29 131.7 175 46.9
THA.LOC104821864 Tarenaya hassleriana HOM05D006880 ORTHO05D008638 4.2e-29 131.7 170 47.1
Aa31LG8G5640 Aethionema arabicum HOM05D006880 ORTHO05D008638 2.7e-28 129.0 187 44.4
ATR0772G040 Amborella trichopoda HOM05D006880 ORTHO05D008638 3.5e-28 128.6 168 47.0
AUR62017937 Chenopodium quinoa HOM05D006880 ORTHO05D008638 1.8e-27 126.3 191 44.0
BcaC02g12236 Brassica carinata HOM05D006880 ORTHO05D008638 3.9e-27 125.2 184 43.5
BcaC05g28570 Brassica carinata HOM05D006880 ORTHO05D008638 3.9e-27 125.2 184 43.5
C05p46720 Brassica napus HOM05D006880 ORTHO05D008638 3.9e-27 125.2 184 43.5
BolC5t33399H Brassica oleracea HOM05D006880 ORTHO05D008638 3.9e-27 125.2 184 43.5
AL3G32180 Arabidopsis lyrata HOM05D006880 ORTHO05D008638 8.7e-27 124.0 181 43.1
AT3G18800 Arabidopsis thaliana HOM05D006880 ORTHO05D008638 8.7e-27 124.0 181 43.1
Sp1g36150 Schrenkiella parvula HOM05D006880 ORTHO05D008638 1.1e-26 123.6 178 43.3
DCAR_016722 Daucus carota HOM05D006880 ORTHO05D008638 1.5e-26 123.2 89 66.3
Sed0021560 Sechium edule HOM05D006880 ORTHO05D008638 3.3e-26 122.1 174 42.5
BcaB06g25933 Brassica carinata HOM05D006880 ORTHO05D008638 5.7e-26 121.3 185 41.6
A05p30800 Brassica napus HOM05D006880 ORTHO05D008638 5.7e-26 121.3 187 41.7
BraA05t21922Z Brassica rapa HOM05D006880 ORTHO05D008638 5.7e-26 121.3 187 41.7
Sp3g16890 Schrenkiella parvula HOM05D006880 ORTHO05D008638 5.7e-26 121.3 191 40.8
Carub.0003s1862 Capsella rubella HOM05D006880 ORTHO05D008638 1.3e-25 120.2 179 43.0
HPP92_025026 Vanilla planifolia HOM05D006880 ORTHO05D008638 3.7e-25 118.6 182 42.3
HPP92_025033 Vanilla planifolia HOM05D006880 ORTHO05D008638 3.7e-25 118.6 182 42.3
CARHR094210 Cardamine hirsuta HOM05D006880 ORTHO05D008638 6.3e-25 117.9 186 41.9
Thhalv10022284m.g Eutrema salsugineum HOM05D006880 ORTHO05D008638 5.9e-23 111.3 190 39.5
Dinv09943 Davidia involucrata HOM05D006880 ORTHO05D008638 1.4e-21 106.7 152 46.1
Peaxi162Scf00025g02313 Petunia axillaris HOM05D006880 ORTHO05D008638 4.2e-21 105.1 141 46.8
CDE06G1704 Ceratophyllum demersum HOM05D006880 ORTHO05D008638 1.2e-20 103.6 144 44.4
CsaV3_6G041940 Cucumis sativus L. HOM05D006880 ORTHO05D008638 1.0e-19 100.5 156 41.0
A08p04110 Brassica napus HOM05D006880 ORTHO05D008638 7.4e-18 94.4 96 50.0
BcaC07g37070 Brassica carinata HOM05D006880 ORTHO05D008638 1.3e-17 93.6 171 39.2
Nn3g19205 Nelumbo nucifera HOM05D006880 ORTHO05D008638 1.7e-17 93.2 54 85.2
Nitab4.5_0011433g0020 Nicotiana tabacum HOM05D006880 ORTHO05D008638 4.5e-15 85.1 62 69.4
Nitab4.5_0023130g0010 Nicotiana tabacum HOM05D006880 ORTHO05D008638 4.5e-15 85.1 62 69.4
Mapoly0012s0135 Marchantia polymorpha HOM05D006880 ORTHO05D008638 1.7e-14 83.2 162 32.7
Os04g0687200 Oryza sativa ssp. japonica HOM05D006880 ORTHO05D008638 5.0e-14 81.6 87 44.8
SMO351G0309 Selaginella moellendorffii HOM05D006880 ORTHO05D008638 1.1e-13 80.5 169 32.5
AagrBONN_evm.TU.Sc2ySwM_228.250 Anthoceros agrestis HOM05D006880 ORTHO05D008638 1.0e-11 73.9 169 30.8
SMO196G0105 Selaginella moellendorffii HOM05D006880 ORTHO05D008638 3.9e-11 72.0 168 28.0
Eucgr.B01306 Eucalyptus grandis HOM05D006880 ORTHO05D008638 1.3e-09 67.0 92 43.5
Eucgr.B00961 Eucalyptus grandis HOM05D006880 ORTHO05D008638 9.1e-08 60.8 50 58.0


User provided reference genes

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