Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn8g40909 Nelumbo nucifera HOM05D005390 ORTHO05D007086 3.3e-206 721.5 361 100.0
Nn1g08373 Nelumbo nucifera HOM05D005390 ORTHO05D007086 4.4e-134 481.9 296 84.1
Nn5g27251 Nelumbo nucifera HOM05D005390 ORTHO05D007086 3.9e-114 415.6 422 56.2
Nn4g22507 Nelumbo nucifera HOM05D005390 ORTHO05D007086 1.2e-110 404.1 215 93.0
Nn2g15275 Nelumbo nucifera HOM05D005390 ORTHO05D007086 1.9e-108 396.7 313 69.3
Nn5g28724 Nelumbo nucifera HOM05D005390 ORTHO05D007086 1.5e-105 387.1 225 86.2
Nn8g39688 Nelumbo nucifera HOM05D005390 ORTHO05D007086 1.7e-101 373.6 201 90.5
Nn1g05493 Nelumbo nucifera HOM05D005390 ORTHO05D007086 2.4e-100 369.8 231 81.0
TAR374G1738 Trochodendron aralioides HOM05D005390 ORTHO05D007086 1.2e-96 357.5 215 83.7
Dinv38486 Davidia involucrata HOM05D005390 ORTHO05D007086 8.6e-90 334.7 215 76.7
TWI09G0451 Tripterygium wilfordii HOM05D005390 ORTHO05D007086 1.5e-89 334.0 215 74.4
TWI39G0214 Tripterygium wilfordii HOM05D005390 ORTHO05D007086 4.3e-89 332.4 215 74.0
CANSAT80G2255 Cannabis sativa HOM05D005390 ORTHO05D007086 7.3e-89 331.6 215 75.3
QL10p005602 Quercus lobata HOM05D005390 ORTHO05D007086 1.4e-87 327.4 215 74.4
Lj9C473T10 Lonicera japonica HOM05D005390 ORTHO05D007086 1.8e-87 327.0 217 75.6
ATR0824G019 Amborella trichopoda HOM05D005390 ORTHO05D007086 4.0e-87 325.9 207 74.9
Haze_07289 Corylus avellana HOM05D005390 ORTHO05D007086 4.0e-87 325.9 215 74.0
ECA232G3921 Erigeron canadensis HOM05D005390 ORTHO05D007086 1.2e-86 324.3 211 73.5
COL.COLO4_04551 Corchorus olitorius HOM05D005390 ORTHO05D007086 1.5e-86 323.9 215 74.9
Manes.06G113700 Manihot esculenta HOM05D005390 ORTHO05D007086 1.5e-86 323.9 209 76.1
Aqoxy3G01354 Aquilegia oxysepala HOM05D005390 ORTHO05D007086 2.6e-86 323.2 247 68.0
GSVIVG01007574001 Vitis vinifera HOM05D005390 ORTHO05D007086 3.4e-86 322.8 215 75.3
Cfa018904 Carpinus fangiana HOM05D005390 ORTHO05D007086 9.9e-86 321.2 215 73.0
HanXRQChr09g0272781 Helianthus annuus HOM05D005390 ORTHO05D007086 9.9e-86 321.2 213 73.2
Cc04_g10660 Coffea canephora HOM05D005390 ORTHO05D007086 2.2e-85 320.1 206 75.7
FAN13G2995 Fragaria x ananassa HOM05D005390 ORTHO05D007086 3.8e-85 319.3 215 72.6
DCAR_016426 Daucus carota HOM05D005390 ORTHO05D007086 8.4e-85 318.2 266 62.8
Sabra12G0066700 Salix brachista HOM05D005390 ORTHO05D007086 8.4e-85 318.2 228 71.1
Thecc.03G120800 Theobroma cacao HOM05D005390 ORTHO05D007086 1.1e-84 317.8 241 66.8
Potri.012G092000 Populus trichocarpa HOM05D005390 ORTHO05D007086 1.4e-84 317.4 228 71.1
Prupe.5G160000 Prunus persica HOM05D005390 ORTHO05D007086 1.9e-84 317.0 216 72.7
FAN18G2367 Fragaria x ananassa HOM05D005390 ORTHO05D007086 4.2e-84 315.8 218 72.0
Hma1.2p1_0983F.1_g244080 Hydrangea macrophylla HOM05D005390 ORTHO05D007086 4.2e-84 315.8 215 72.6
MD06G1160400 Malus domestica HOM05D005390 ORTHO05D007086 4.2e-84 315.8 216 72.7
vmacro19255 Vaccinium macrocarpon HOM05D005390 ORTHO05D007086 5.4e-84 315.5 215 71.6
FAN04G1107 Fragaria x ananassa HOM05D005390 ORTHO05D007086 9.3e-84 314.7 215 72.1
PSO017G5335 Papaver somniferum HOM05D005390 ORTHO05D007086 9.3e-84 314.7 215 73.5
Nitab4.5_0000003g0930 Nicotiana tabacum HOM05D005390 ORTHO05D007086 1.6e-83 313.9 213 70.4
RcHm_v2.0_Chr7g0191501 Rosa chinensis HOM05D005390 ORTHO05D007086 1.6e-83 313.9 215 73.0
PSO478G4661 Papaver somniferum HOM05D005390 ORTHO05D007086 2.7e-83 313.2 215 73.0
PGSC0003DMG400027069 Solanum tuberosum HOM05D005390 ORTHO05D007086 2.7e-83 313.2 206 72.8
Rhsim08G0183100 Rhododendron simsii HOM05D005390 ORTHO05D007086 4.6e-83 312.4 215 71.2
Atru.BG.198.p Acer truncatum HOM05D005390 ORTHO05D007086 6.0e-83 312.0 206 75.2
Duzib205G1771 Durio zibethinus HOM05D005390 ORTHO05D007086 7.8e-83 311.6 250 66.4
Solyc06g071850.3 Solanum lycopersicum HOM05D005390 ORTHO05D007086 1.3e-82 310.8 200 74.0
Sopen06g028130 Solanum pennellii HOM05D005390 ORTHO05D007086 1.3e-82 310.8 200 73.5
Peaxi162Scf00763g00330 Petunia axillaris HOM05D005390 ORTHO05D007086 1.7e-82 310.5 200 74.5
Thhalv10003779m.g Eutrema salsugineum HOM05D005390 ORTHO05D007086 2.3e-82 310.1 214 68.2
Gohir.A12G187300 Gossypium hirsutum HOM05D005390 ORTHO05D007086 3.9e-82 309.3 210 73.3
Gorai.008G204100 Gossypium raimondii HOM05D005390 ORTHO05D007086 3.9e-82 309.3 210 73.3
Gohir.D12G190300 Gossypium hirsutum HOM05D005390 ORTHO05D007086 1.5e-81 307.4 208 73.6
Lalb_Chr11g0069761 Lupinus albus HOM05D005390 ORTHO05D007086 1.9e-81 307.0 206 73.3
Actinidia19375 Actinidia chinensis HOM05D005390 ORTHO05D007086 2.5e-81 306.6 209 71.8
CAN.G1046.1 Capsicum annuum HOM05D005390 ORTHO05D007086 2.5e-81 306.6 206 70.9
AL8G40290 Arabidopsis lyrata HOM05D005390 ORTHO05D007086 4.3e-81 305.8 205 69.3
Glyma.04G191600 Glycine max HOM05D005390 ORTHO05D007086 4.3e-81 305.8 266 60.5
Lsat_1_v5_gn_4_78320 Lactuca sativa HOM05D005390 ORTHO05D007086 7.3e-81 305.1 212 70.3
Sp2g26330 Schrenkiella parvula HOM05D005390 ORTHO05D007086 7.3e-81 305.1 208 68.8
Sed0027546 Sechium edule HOM05D005390 ORTHO05D007086 9.6e-81 304.7 215 67.4
Nitab4.5_0014349g0010 Nicotiana tabacum HOM05D005390 ORTHO05D007086 1.6e-80 303.9 206 70.4
Oeu053506.1 Olea europaea HOM05D005390 ORTHO05D007086 1.6e-80 303.9 209 72.7
Aa31LG1G18770 Aethionema arabicum HOM05D005390 ORTHO05D007086 2.1e-80 303.5 247 60.7
ClCG03G003390 Citrullus lanatus HOM05D005390 ORTHO05D007086 3.6e-80 302.8 215 68.4
Carub.0008s2396 Capsella rubella HOM05D005390 ORTHO05D007086 4.8e-80 302.4 205 68.3
AUR62001260 Chenopodium quinoa HOM05D005390 ORTHO05D007086 4.8e-80 302.4 216 72.2
Oeu011587.1 Olea europaea HOM05D005390 ORTHO05D007086 4.8e-80 302.4 206 72.8
Glyma.06G174300 Glycine max HOM05D005390 ORTHO05D007086 6.2e-80 302.0 247 62.8
MELO3C002325.2 Cucumis melo HOM05D005390 ORTHO05D007086 1.1e-79 301.2 209 68.9
AUR62025748 Chenopodium quinoa HOM05D005390 ORTHO05D007086 1.4e-79 300.8 216 71.8
CsaV3_1G009190 Cucumis sativus L. HOM05D005390 ORTHO05D007086 1.4e-79 300.8 215 67.4
THA.LOC104818200 Tarenaya hassleriana HOM05D005390 ORTHO05D007086 6.9e-79 298.5 216 66.7
Eucgr.B00166 Eucalyptus grandis HOM05D005390 ORTHO05D007086 1.5e-78 297.4 215 67.4
Phvul.009G170000 Phaseolus vulgaris HOM05D005390 ORTHO05D007086 1.5e-78 297.4 247 62.3
EL10Ac7g18053 Beta vulgaris HOM05D005390 ORTHO05D007086 2.0e-78 297.0 205 71.2
Psat5g139480 Pisum sativum HOM05D005390 ORTHO05D007086 2.0e-78 297.0 260 60.0
Ciclev10019194m.g Citrus clementina HOM05D005390 ORTHO05D007086 5.8e-78 295.4 214 68.7
arahy.Tifrunner.gnm1.ann1.V8X883 Arachis hypogaea HOM05D005390 ORTHO05D007086 7.6e-78 295.0 209 67.9
PGR083G1300 Punica granatum HOM05D005390 ORTHO05D007086 1.7e-77 293.9 209 65.6
Medtr3g075240 Medicago truncatula HOM05D005390 ORTHO05D007086 2.2e-77 293.5 215 67.4
Lj1g0026120 Lotus japonicus HOM05D005390 ORTHO05D007086 2.9e-77 293.1 266 58.3
arahy.Tifrunner.gnm1.ann1.EKVH9G Arachis hypogaea HOM05D005390 ORTHO05D007086 3.8e-77 292.7 215 67.0
VMungo1309G2389 Vigna mungo HOM05D005390 ORTHO05D007086 6.4e-77 292.0 281 56.2
Ca_16101_v3 Cicer arietinum L. HOM05D005390 ORTHO05D007086 8.4e-77 291.6 267 59.2
Ca_30077_v3 Cicer arietinum L. HOM05D005390 ORTHO05D007086 8.4e-77 291.6 267 59.2
FAN08G1670 Fragaria x ananassa HOM05D005390 ORTHO05D007086 8.4e-77 291.6 218 67.9
SGA_v2.0_scaffold25G10792 Striga asiatica HOM05D005390 ORTHO05D007086 4.2e-76 289.3 200 68.5
MSTRG.11518 Avicennia marina HOM05D005390 ORTHO05D007086 5.1e-74 282.3 206 67.5
TPR.G38664 Trifolium pratense HOM05D005390 ORTHO05D007086 5.1e-74 282.3 292 52.4
Hund05621 Selenicereus undatus HOM05D005390 ORTHO05D007086 1.1e-73 281.2 204 68.6
SEGI_06673 Sequoiadendron giganteum HOM05D005390 ORTHO05D007086 1.3e-72 277.7 206 67.0
AT5G63200 Arabidopsis thaliana HOM05D005390 ORTHO05D007086 2.8e-72 276.6 188 69.7
Zm00001eb144210 Zea mays HOM05D005390 ORTHO05D007086 9.0e-71 271.6 222 59.9
Cpa.g.sc4.44 Carica papaya HOM05D005390 ORTHO05D007086 1.2e-70 271.2 183 69.9
unitig_22.g5443 Utricularia gibba HOM05D005390 ORTHO05D007086 1.1e-68 264.6 206 62.1
C09p09230 Brassica napus HOM05D005390 ORTHO05D007086 2.4e-68 263.5 171 71.3
BolC9t53836H Brassica oleracea HOM05D005390 ORTHO05D007086 2.4e-68 263.5 171 71.3
BraA09t36469Z Brassica rapa HOM05D005390 ORTHO05D007086 7.1e-68 261.9 182 67.6
A09p08180 Brassica napus HOM05D005390 ORTHO05D007086 1.0e-66 258.1 182 67.0
HPP92_001962 Vanilla planifolia HOM05D005390 ORTHO05D007086 6.7e-66 255.4 241 53.5
Nn6g32370 Nelumbo nucifera HOM05D005390 ORTHO05D007086 6.2e-64 248.8 169 75.7
Nn7g37481 Nelumbo nucifera HOM05D005390 ORTHO05D007086 4.0e-63 246.1 517 37.1
SMO356G0210 Selaginella moellendorffii HOM05D005390 ORTHO05D007086 4.0e-63 246.1 198 60.1
SalBow5G1843 Salvia bowleyana HOM05D005390 ORTHO05D007086 5.3e-63 245.7 235 54.9
Mapoly0013s0178 Marchantia polymorpha HOM05D005390 ORTHO05D007086 9.0e-63 245.0 215 56.3
Os01g0906600 Oryza sativa ssp. japonica HOM05D005390 ORTHO05D007086 4.5e-62 242.7 205 57.1
AagrBONN_evm.TU.Sc2ySwM_228.344 Anthoceros agrestis HOM05D005390 ORTHO05D007086 8.4e-61 238.4 207 57.0
Nn8g40618 Nelumbo nucifera HOM05D005390 ORTHO05D007086 1.8e-58 230.7 125 90.4
CSS0013940 Camellia sinensis var. sinensis HOM05D005390 ORTHO05D007086 1.3e-56 224.6 151 73.5
FvH4_5g07030 Fragaria vesca HOM05D005390 ORTHO05D007086 1.4e-55 221.1 151 70.9
Sc22g0003910 Simmondsia chinensis HOM05D005390 ORTHO05D007086 1.2e-51 208.0 142 72.5
Nn1g03252 Nelumbo nucifera HOM05D005390 ORTHO05D007086 3.2e-44 183.3 93 96.8
Nn1g06247 Nelumbo nucifera HOM05D005390 ORTHO05D007086 2.2e-40 170.6 97 87.6
Nn5g26726 Nelumbo nucifera HOM05D005390 ORTHO05D007086 2.7e-35 153.7 80 95.0
CiPaw.12G034500 Carya illinoinensis HOM05D005390 ORTHO05D007086 8.2e-32 142.1 97 74.2
Nn2g14552 Nelumbo nucifera HOM05D005390 ORTHO05D028071 3.7e-24 116.7 86 66.3
CAN.G1302.1 Capsicum annuum HOM05D005390 ORTHO05D002902 5.0e-21 106.3 71 63.4
Migut.O00224 Erythranthe guttata HOM05D005390 ORTHO05D007086 3.2e-20 103.6 158 43.0
CAN.G534.23 Capsicum annuum HOM05D005390 ORTHO05D007086 7.2e-20 102.4 71 62.0
RcHm_v2.0_Chr5g0027621 Rosa chinensis HOM05D005390 ORTHO05D007086 1.0e-18 98.6 78 62.8
Nn4g26176 Nelumbo nucifera HOM05D000321 ORTHO05D000204 1.4e-18 98.2 66 75.8
CSS0032502 Camellia sinensis var. sinensis HOM05D005390 ORTHO05D007086 4.0e-18 96.7 76 65.8
CSS0049807 Camellia sinensis var. sinensis HOM05D005390 ORTHO05D007086 4.0e-18 96.7 76 65.8
CARHR277060 Cardamine hirsuta HOM05D005390 ORTHO05D007086 8.8e-18 95.5 64 65.6
CsaV3_3G015420 Cucumis sativus L. HOM05D005390 ORTHO05D007086 1.3e-16 91.7 66 68.2
Nn5g29268 Nelumbo nucifera HOM05D005734 ORTHO05D006990 2.8e-16 90.5 71 64.8
CiPaw.12G034400 Carya illinoinensis HOM05D005390 ORTHO05D007086 3.7e-16 90.1 64 70.3
TAR381G0053 Trochodendron aralioides HOM05D000018 ORTHO05D001172 1.1e-15 88.6 122 41.8
Hma1.2p1_2683F.1_g326880 Hydrangea macrophylla HOM05D005390 ORTHO05D007086 3.1e-15 87.0 64 64.1
Nn7g36895 Nelumbo nucifera HOM05D004500 ORTHO05D005775 5.4e-15 86.3 74 60.8
Nn2g13380 Nelumbo nucifera HOM05D007483 ORTHO05D009133 3.5e-14 83.6 90 48.9
Nn1g05960 Nelumbo nucifera HOM05D000513 ORTHO05D011790 7.7e-14 82.4 72 55.6
CAN.G755.13 Capsicum annuum HOM05D005390 ORTHO05D007086 8.6e-13 79.0 87 51.7
A06p18430 Brassica napus HOM05D005390 ORTHO05D028071 7.2e-12 75.9 46 69.6
Nn2g12662 Nelumbo nucifera HOM05D000513 ORTHO05D011790 9.5e-12 75.5 68 54.4
Nn3g21973 Nelumbo nucifera HOM05D000513 ORTHO05D011790 1.6e-11 74.7 65 55.4
Nn8g41189 Nelumbo nucifera HOM05D000513 ORTHO05D011790 2.1e-11 74.3 70 54.3
A09p53940 Brassica napus HOM05D005390 ORTHO05D028071 2.8e-11 73.9 46 67.4
BraA09t40810Z Brassica rapa HOM05D005390 ORTHO05D028071 2.8e-11 73.9 46 67.4
Nn3g19134 Nelumbo nucifera HOM05D000071 ORTHO05D000029 2.3e-10 70.9 60 60.0
Nn1g01041 Nelumbo nucifera HOM05D000513 ORTHO05D011790 3.0e-10 70.5 119 37.8
Nn1g02654 Nelumbo nucifera HOM05D000513 ORTHO05D009133 1.5e-09 68.2 70 51.4
Nn1g06414 Nelumbo nucifera HOM05D000513 ORTHO05D011790 2.0e-09 67.8 70 50.0
Nn5g27400 Nelumbo nucifera HOM05D000513 ORTHO05D009133 2.0e-06 57.8 209 28.7


User provided reference genes

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