Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn8g40820 Nelumbo nucifera HOM05D006349 ORTHO05D008205 6.8e-49 197.2 114 100.0
Nn4g23038 Nelumbo nucifera HOM05D006349 ORTHO05D008205 3.5e-21 105.1 121 59.5
MBI19_g30284_MAGBIO Magnolia biondii HOM05D006349 ORTHO05D008205 6.9e-17 90.9 118 55.1
QL10p015567 Quercus lobata HOM05D006349 ORTHO05D008205 2.0e-16 89.4 117 54.7
ATR1120G128 Amborella trichopoda HOM05D006349 ORTHO05D008205 7.6e-16 87.4 116 54.3
Potri.012G070600 Populus trichocarpa HOM05D006349 ORTHO05D008205 7.6e-16 87.4 111 57.7
GSVIVG01008063001 Vitis vinifera HOM05D006349 ORTHO05D008205 9.9e-16 87.0 123 52.0
Glyma.06G190300 Glycine max HOM05D006349 ORTHO05D008205 1.3e-15 86.7 118 51.7
CDE07G1088 Ceratophyllum demersum HOM05D006349 ORTHO05D008205 2.2e-15 85.9 121 49.6
Lsat_1_v5_gn_4_107320 Lactuca sativa HOM05D006349 ORTHO05D008205 2.9e-15 85.5 121 52.9
Glyma.04G174400 Glycine max HOM05D006349 ORTHO05D008205 3.8e-15 85.1 118 51.7
arahy.Tifrunner.gnm1.ann1.FR12T1 Arachis hypogaea HOM05D006349 ORTHO05D008205 4.9e-15 84.7 119 52.1
COL.COLO4_05705 Corchorus olitorius HOM05D006349 ORTHO05D008205 4.9e-15 84.7 123 53.7
Gohir.A13G008300 Gossypium hirsutum HOM05D006349 ORTHO05D008205 4.9e-15 84.7 125 51.2
Gohir.D13G009000 Gossypium hirsutum HOM05D006349 ORTHO05D008205 4.9e-15 84.7 125 51.2
Gorai.013G009800 Gossypium raimondii HOM05D006349 ORTHO05D008205 4.9e-15 84.7 125 51.2
Hund02668 Selenicereus undatus HOM05D006349 ORTHO05D008205 8.4e-15 84.0 119 50.4
arahy.Tifrunner.gnm1.ann1.GD5F3R Arachis hypogaea HOM05D006349 ORTHO05D008205 1.1e-14 83.6 119 51.3
Phvul.009G190100 Phaseolus vulgaris HOM05D006349 ORTHO05D008205 1.1e-14 83.6 118 52.5
Aqoxy3G03265 Aquilegia oxysepala HOM05D006349 ORTHO05D008205 1.4e-14 83.2 117 52.1
Duzib068G1139 Durio zibethinus HOM05D006349 ORTHO05D008205 1.4e-14 83.2 123 52.8
Solyc03g113240.3 Solanum lycopersicum HOM05D006349 ORTHO05D008205 1.4e-14 83.2 112 53.6
Sopen03g032300 Solanum pennellii HOM05D006349 ORTHO05D008205 1.4e-14 83.2 112 53.6
PGSC0003DMG400025345 Solanum tuberosum HOM05D006349 ORTHO05D008205 1.4e-14 83.2 112 53.6
PGR083G1017 Punica granatum HOM05D006349 ORTHO05D008205 1.9e-14 82.8 121 52.1
Nitab4.5_0000785g0220 Nicotiana tabacum HOM05D006349 ORTHO05D008205 2.4e-14 82.4 123 50.4
Sc12g0006210 Simmondsia chinensis HOM05D006349 ORTHO05D008205 3.2e-14 82.0 122 51.6
Eucgr.B00425 Eucalyptus grandis HOM05D006349 ORTHO05D008205 4.2e-14 81.6 119 52.1
Potri.015G065100 Populus trichocarpa HOM05D006349 ORTHO05D008205 5.4e-14 81.3 111 55.9
Hma1.2p1_0104F.1_g050210 Hydrangea macrophylla HOM05D006349 ORTHO05D008205 7.1e-14 80.9 123 47.2
Manes.06G096400 Manihot esculenta HOM05D006349 ORTHO05D008205 7.1e-14 80.9 114 52.6
Nitab4.5_0004605g0070 Nicotiana tabacum HOM05D006349 ORTHO05D008205 7.1e-14 80.9 123 49.6
CAN.G999.48 Capsicum annuum HOM05D006349 ORTHO05D008205 1.2e-13 80.1 121 47.9
Dinv38665 Davidia involucrata HOM05D006349 ORTHO05D008205 1.2e-13 80.1 108 54.6
CANSAT80G2583 Cannabis sativa HOM05D006349 ORTHO05D008205 2.1e-13 79.3 111 54.1
HPP92_022919 Vanilla planifolia HOM05D006349 ORTHO05D008205 2.1e-13 79.3 119 49.6
HPP92_022931 Vanilla planifolia HOM05D006349 ORTHO05D008205 2.1e-13 79.3 119 49.6
Cfa018991 Carpinus fangiana HOM05D006349 ORTHO05D008205 3.5e-13 78.6 117 50.4
HanXRQChr09g0271121 Helianthus annuus HOM05D006349 ORTHO05D008205 3.5e-13 78.6 117 50.4
Zm00001eb160550 Zea mays HOM05D006349 ORTHO05D008205 3.5e-13 78.6 125 48.8
Haze_07380 Corylus avellana HOM05D006349 ORTHO05D008205 4.6e-13 78.2 115 51.3
Lalb_Chr08g0235931 Lupinus albus HOM05D006349 ORTHO05D008205 4.6e-13 78.2 116 49.1
CiPaw.11G038000 Carya illinoinensis HOM05D006349 ORTHO05D008205 7.9e-13 77.4 116 50.9
Sabra15G0090500 Salix brachista HOM05D006349 ORTHO05D008205 7.9e-13 77.4 111 54.1
Peaxi162Scf00009g00321 Petunia axillaris HOM05D006349 ORTHO05D008205 1.0e-12 77.0 123 48.0
Ciclev10022359m.g Citrus clementina HOM05D006349 ORTHO05D008205 1.3e-12 76.6 121 48.8
Psat7g112120 Pisum sativum HOM05D006349 ORTHO05D008205 1.3e-12 76.6 125 48.8
TPR.G11993 Trifolium pratense HOM05D006349 ORTHO05D008205 1.3e-12 76.6 111 51.4
EL10Ac5g10944 Beta vulgaris HOM05D006349 ORTHO05D008205 1.8e-12 76.3 112 50.9
Oeu006473.1 Olea europaea HOM05D006349 ORTHO05D008205 1.8e-12 76.3 108 52.8
PSO781G0309 Papaver somniferum HOM05D006349 ORTHO05D008205 1.8e-12 76.3 125 47.2
Atru.chr9.2318 Acer truncatum HOM05D006349 ORTHO05D008205 2.3e-12 75.9 120 48.3
ECA232G0565 Erigeron canadensis HOM05D006349 ORTHO05D008205 3.9e-12 75.1 121 47.9
ClCG01G014390 Citrullus lanatus HOM05D006349 ORTHO05D008205 5.1e-12 74.7 111 51.4
Cpa.g.sc17.203 Carica papaya HOM05D006349 ORTHO05D008205 6.7e-12 74.3 111 51.4
CsaV3_1G007920 Cucumis sativus L. HOM05D006349 ORTHO05D008205 6.7e-12 74.3 121 49.6
TWI81G0140 Tripterygium wilfordii HOM05D006349 ORTHO05D008205 6.7e-12 74.3 123 49.6
MELO3C002208.2 Cucumis melo HOM05D006349 ORTHO05D008205 1.5e-11 73.2 119 48.7
MD14G1194200 Malus domestica HOM05D006349 ORTHO05D008205 1.5e-11 73.2 118 49.2
TAR622G0703 Trochodendron aralioides HOM05D006349 ORTHO05D008205 1.5e-11 73.2 121 48.8
MD06G1188100 Malus domestica HOM05D006349 ORTHO05D008205 1.9e-11 72.8 111 51.4
Pp3c25_12400 Physcomitrium patens HOM05D006349 ORTHO05D008205 1.9e-11 72.8 107 51.4
Lj1g0000266 Lotus japonicus HOM05D006349 ORTHO05D008205 3.3e-11 72.0 118 45.8
DCAR_015995 Daucus carota HOM05D006349 ORTHO05D008205 4.3e-11 71.6 126 48.4
AL2G34620 Arabidopsis lyrata HOM05D006349 ORTHO05D008205 5.6e-11 71.2 111 49.5
AT1G74730 Arabidopsis thaliana HOM05D006349 ORTHO05D008205 5.6e-11 71.2 111 50.5
Carub.0002s2152 Capsella rubella HOM05D006349 ORTHO05D008205 5.6e-11 71.2 111 49.5
A07p40410 Brassica napus HOM05D006349 ORTHO05D008205 7.4e-11 70.9 111 50.5
AUR62021741 Chenopodium quinoa HOM05D006349 ORTHO05D008205 7.4e-11 70.9 119 47.1
Medtr4g089080 Medicago truncatula HOM05D006349 ORTHO05D008205 9.6e-11 70.5 110 49.1
Os01g0585300 Oryza sativa ssp. japonica HOM05D006349 ORTHO05D008205 9.6e-11 70.5 112 49.1
CDE04G3639 Ceratophyllum demersum HOM05D006349 ORTHO05D008205 1.3e-10 70.1 121 44.6
Ca_25734_v3 Cicer arietinum L. HOM05D006349 ORTHO05D008205 1.3e-10 70.1 111 48.6
Sp5g29850 Schrenkiella parvula HOM05D006349 ORTHO05D008205 1.3e-10 70.1 111 49.5
SGA_v2.0_scaffold7G04081 Striga asiatica HOM05D006349 ORTHO05D008205 1.3e-10 70.1 112 49.1
BcaC08g46899 Brassica carinata HOM05D006349 ORTHO05D008205 1.6e-10 69.7 111 49.5
C06p48760 Brassica napus HOM05D006349 ORTHO05D008205 1.6e-10 69.7 111 49.5
BolC6t39912H Brassica oleracea HOM05D006349 ORTHO05D008205 1.6e-10 69.7 111 49.5
BraA07t31583Z Brassica rapa HOM05D006349 ORTHO05D008205 1.6e-10 69.7 111 49.5
MSTRG.4410 Avicennia marina HOM05D006349 ORTHO05D008205 2.1e-10 69.3 121 46.3
SalBow7G1566 Salvia bowleyana HOM05D006349 ORTHO05D008205 2.1e-10 69.3 110 49.1
RcHm_v2.0_Chr7g0180591 Rosa chinensis HOM05D006349 ORTHO05D008205 2.8e-10 68.9 111 49.5
vmacro19434 Vaccinium macrocarpon HOM05D006349 ORTHO05D008205 2.8e-10 68.9 108 49.1
Ah.02g113210 Amaranthus hybridus HOM05D006349 ORTHO05D008205 3.6e-10 68.6 99 51.5
Migut.D01854 Erythranthe guttata HOM05D006349 ORTHO05D008205 4.8e-10 68.2 112 47.3
Sed0016194 Sechium edule HOM05D006349 ORTHO05D008205 4.8e-10 68.2 125 46.4
BcaC03g15525 Brassica carinata HOM05D006349 ORTHO05D008205 6.2e-10 67.8 111 48.6
C02p32090 Brassica napus HOM05D006349 ORTHO05D008205 6.2e-10 67.8 111 48.6
BolC2t09244H Brassica oleracea HOM05D006349 ORTHO05D008205 6.2e-10 67.8 111 48.6
BraA02t06992Z Brassica rapa HOM05D006349 ORTHO05D008205 6.2e-10 67.8 111 48.6
CARHR068050 Cardamine hirsuta HOM05D006349 ORTHO05D008205 8.1e-10 67.4 111 47.7
Cc04_g15550 Coffea canephora HOM05D006349 ORTHO05D008205 1.1e-09 67.0 112 47.3
BcaC08g46920 Brassica carinata HOM05D006349 ORTHO05D008205 1.4e-09 66.6 108 50.0
FvH4_5g15500 Fragaria vesca HOM05D006349 ORTHO05D008205 1.8e-09 66.2 111 48.6
FAN13G0390 Fragaria x ananassa HOM05D006349 ORTHO05D008205 1.8e-09 66.2 111 48.6
FAN18G4547 Fragaria x ananassa HOM05D006349 ORTHO05D008205 1.8e-09 66.2 111 48.6
BcaB05g24870 Brassica carinata HOM05D003553 ORTHO05D005072 2.4e-09 65.9 101 50.5
unitig_46.g18468 Utricularia gibba HOM05D006349 ORTHO05D008205 3.1e-09 65.5 105 46.7
Lj9P459T48 Lonicera japonica HOM05D006349 ORTHO05D008205 4.0e-09 65.1 103 49.5
Pp3c20_23180 Physcomitrium patens HOM05D006349 ORTHO05D008205 4.0e-09 65.1 117 46.2
Thecc.03G079100 Theobroma cacao HOM05D006349 ORTHO05D008205 4.0e-09 65.1 117 45.3
CSS0001294 Camellia sinensis var. sinensis HOM05D006349 ORTHO05D008205 1.2e-08 63.5 103 47.6
Actinidia37657 Actinidia chinensis HOM05D006349 ORTHO05D008205 1.5e-08 63.2 105 47.6
FAN04G0897 Fragaria x ananassa HOM05D006349 ORTHO05D008205 4.5e-08 61.6 111 45.9
SEGI_24937 Sequoiadendron giganteum HOM05D006349 ORTHO05D008205 4.5e-08 61.6 74 48.6
AUR62008355 Chenopodium quinoa HOM05D006349 ORTHO05D008205 1.3e-07 60.1 104 47.1
Actinidia04919 Actinidia chinensis HOM05D006349 ORTHO05D008205 1.7e-07 59.7 74 47.3


User provided reference genes

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