Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn8g40771 Nelumbo nucifera HOM05D004264 ORTHO05D004680 4.1e-105 384.8 201 100.0
TAR623G1256 Trochodendron aralioides HOM05D004264 ORTHO05D004680 1.2e-67 260.4 201 62.2
Cfa017136 Carpinus fangiana HOM05D004264 ORTHO05D004680 3.0e-60 235.7 199 57.3
Dinv08428 Davidia involucrata HOM05D004264 ORTHO05D008966 3.0e-60 235.7 200 57.0
CiPaw.09G213400 Carya illinoinensis HOM05D004264 ORTHO05D004680 7.5e-59 231.1 197 57.9
Manes.09G110101 Manihot esculenta HOM05D004264 ORTHO05D004680 2.8e-58 229.2 200 56.0
TWI74G1571 Tripterygium wilfordii HOM05D004264 ORTHO05D004680 8.3e-58 227.6 200 57.0
Potri.016G122350 Populus trichocarpa HOM05D004264 ORTHO05D004680 1.6e-56 223.4 197 56.3
PSO801G0087 Papaver somniferum HOM05D004264 ORTHO05D004680 2.9e-55 219.2 198 56.1
PSO339G3729 Papaver somniferum HOM05D004264 ORTHO05D004680 1.5e-54 216.9 198 55.1
Hma1.2p1_0479F.1_g161540 Hydrangea macrophylla HOM05D004264 ORTHO05D004680 1.9e-54 216.5 197 52.3
Actinidia29078 Actinidia chinensis HOM05D004264 ORTHO05D004680 5.6e-54 214.9 196 53.6
ClCG04G006790 Citrullus lanatus HOM05D004264 ORTHO05D004680 7.3e-54 214.5 197 51.3
Thecc.05G009200 Theobroma cacao HOM05D004264 ORTHO05D004680 9.5e-54 214.2 197 53.8
CsaV3_4G026470 Cucumis sativus L. HOM05D004264 ORTHO05D004680 5.2e-52 208.4 197 50.8
Actinidia11558 Actinidia chinensis HOM05D004264 ORTHO05D004680 6.8e-52 208.0 201 52.2
Solyc04g072210.4 Solanum lycopersicum HOM05D004264 ORTHO05D004680 6.8e-52 208.0 201 51.2
Atru.chr8.2305 Acer truncatum HOM05D004264 ORTHO05D004680 8.9e-52 207.6 196 49.5
PGR004G2045 Punica granatum HOM05D004264 ORTHO05D004680 3.4e-51 205.7 200 51.0
Duzib093G0558 Durio zibethinus HOM05D004264 ORTHO05D004680 2.2e-50 203.0 197 51.8
Gohir.D01G219000 Gossypium hirsutum HOM05D004264 ORTHO05D004680 3.7e-50 202.2 197 51.3
Sed0006342 Sechium edule HOM05D004264 ORTHO05D004680 6.4e-50 201.4 195 47.2
COL.COLO4_14480 Corchorus olitorius HOM05D004264 ORTHO05D004680 8.3e-50 201.1 197 50.8
Duzib106G1969 Durio zibethinus HOM05D004264 ORTHO05D004680 3.2e-49 199.1 197 49.7
Glyma.18G205200 Glycine max HOM05D004264 ORTHO05D004680 4.1e-49 198.7 193 49.2
Glyma.07G154451 Glycine max HOM05D004264 ORTHO05D004680 9.2e-49 197.6 193 49.7
Hund14916 Selenicereus undatus HOM05D004264 ORTHO05D004680 1.3e-47 193.7 197 47.7
FAN05G3264 Fragaria x ananassa HOM05D004264 ORTHO05D004680 3.0e-47 192.6 201 46.3
FAN05G1725 Fragaria x ananassa HOM05D004264 ORTHO05D004680 3.9e-47 192.2 201 46.3
FAN05G1746 Fragaria x ananassa HOM05D004264 ORTHO05D004680 3.9e-47 192.2 201 46.3
Lsat_1_v5_gn_6_104820 Lactuca sativa HOM05D004264 ORTHO05D004680 3.9e-47 192.2 198 50.0
FAN09G4226 Fragaria x ananassa HOM05D004264 ORTHO05D004680 5.0e-47 191.8 197 46.2
CANSAT35G1133 Cannabis sativa HOM05D004264 ORTHO05D004680 1.1e-46 190.7 197 46.7
Gohir.A01G229100 Gossypium hirsutum HOM05D004264 ORTHO05D004680 1.5e-46 190.3 197 48.7
Gorai.002G265700 Gossypium raimondii HOM05D004264 ORTHO05D004680 3.3e-46 189.1 197 48.7
THA.LOC104816187 Tarenaya hassleriana HOM05D004264 ORTHO05D004680 4.3e-46 188.7 197 46.7
DCAR_015367 Daucus carota HOM05D004264 ORTHO05D004680 9.5e-46 187.6 201 48.8
MD12G1177600 Malus domestica HOM05D004264 ORTHO05D004680 3.6e-45 185.7 198 46.0
MD04G1163700 Malus domestica HOM05D004264 ORTHO05D004680 6.2e-45 184.9 199 46.2
Sp3g07270 Schrenkiella parvula HOM05D004264 ORTHO05D004680 6.2e-45 184.9 197 46.7
MBI10_g27417_MAGBIO Magnolia biondii HOM05D004264 ORTHO05D004680 8.0e-45 184.5 195 50.3
FAN02G3507 Fragaria x ananassa HOM05D004264 ORTHO05D004680 1.1e-44 184.1 197 44.7
VMungo1383G0816 Vigna mungo HOM05D004264 ORTHO05D004680 1.4e-44 183.7 200 45.5
AL3G19870 Arabidopsis lyrata HOM05D004264 ORTHO05D004680 5.2e-44 181.8 197 44.7
CARHR083200 Cardamine hirsuta HOM05D004264 ORTHO05D004680 1.2e-43 180.6 197 44.2
ECA233G6002 Erigeron canadensis HOM05D004264 ORTHO05D004680 1.5e-43 180.3 183 47.5
Lj3g0014192 Lotus japonicus HOM05D004264 ORTHO05D004680 2.0e-43 179.9 199 44.2
AT3G08880 Arabidopsis thaliana HOM05D004264 ORTHO05D004680 1.3e-42 177.2 197 43.7
Medtr1g100900 Medicago truncatula HOM05D004264 ORTHO05D004680 1.3e-42 177.2 200 46.5
Lalb_Chr01g0023271 Lupinus albus HOM05D004264 ORTHO05D004680 2.2e-42 176.4 203 44.8
THA.LOC104827057 Tarenaya hassleriana HOM05D004264 ORTHO05D004680 3.2e-41 172.6 198 42.4
Carub.0003s0799 Capsella rubella HOM05D004264 ORTHO05D004680 4.1e-41 172.2 197 44.2
Phvul.008G094300 Phaseolus vulgaris HOM05D004264 ORTHO05D004680 7.0e-41 171.4 214 43.5
Psat3g124240 Pisum sativum HOM05D004264 ORTHO05D004680 1.2e-40 170.6 199 44.2
AL6G10480 Arabidopsis lyrata HOM05D004264 ORTHO05D004680 9.5e-38 161.0 185 42.7
Carub.0006s0026 Capsella rubella HOM05D004264 ORTHO05D004680 5.2e-36 155.2 195 41.0
VMungo1383G0682 Vigna mungo HOM05D004264 ORTHO05D004680 9.9e-35 151.0 271 33.9
BcaC09g47997 Brassica carinata HOM05D004264 ORTHO05D004680 3.7e-34 149.1 198 36.9
SEGI_36861 Sequoiadendron giganteum HOM05D004264 ORTHO05D004680 6.4e-34 148.3 191 40.3
Sabra16G0118000 Salix brachista HOM05D004264 ORTHO05D004680 1.1e-33 147.5 194 45.9
Thhalv10021618m.g Eutrema salsugineum HOM05D004264 ORTHO05D004680 3.2e-33 146.0 197 36.5
BcaC09g48040 Brassica carinata HOM05D004264 ORTHO05D004680 7.8e-32 141.4 197 35.5
BNapus_Darmor_BZH_scaffold_167p00190 Brassica napus HOM05D004264 ORTHO05D004680 7.8e-32 141.4 197 35.5
BraA01t04327Z Brassica rapa HOM05D004264 ORTHO05D004680 6.6e-31 138.3 197 35.5
AT5G01570 Arabidopsis thaliana HOM05D004264 ORTHO05D004680 4.3e-30 135.6 183 38.3
Zm00001eb423320 Zea mays HOM05D004264 ORTHO05D004680 1.2e-29 134.0 159 44.7
Zm00001eb068100 Zea mays HOM05D004264 ORTHO05D004680 1.1e-28 131.0 189 35.4
MBI03_g10315_MAGBIO Magnolia biondii HOM05D004264 ORTHO05D004680 1.8e-28 130.2 181 40.3
Ah.12g058940 Amaranthus hybridus HOM05D004264 ORTHO05D004680 5.2e-28 128.6 197 35.5
AUR62030782 Chenopodium quinoa HOM05D004264 ORTHO05D004680 4.4e-27 125.6 201 36.3
GSVIVG01030301001 Vitis vinifera HOM05D004264 ORTHO05D004680 7.6e-27 124.8 107 55.1
Cc05_g01720 Coffea canephora HOM05D004264 ORTHO05D004680 1.7e-26 123.6 100 59.0
Sc09g0006620 Simmondsia chinensis HOM05D004264 ORTHO05D004680 3.8e-26 122.5 148 43.2
TAR209G0008 Trochodendron aralioides HOM05D004264 ORTHO05D004680 3.8e-26 122.5 108 58.3
Haze_21059 Corylus avellana HOM05D004264 ORTHO05D004680 4.9e-26 122.1 107 57.0
AUR62030512 Chenopodium quinoa HOM05D004264 ORTHO05D004680 6.4e-26 121.7 201 35.8
QL07p034201 Quercus lobata HOM05D004264 ORTHO05D004680 8.4e-26 121.3 107 53.3
Rhsim05G0223600 Rhododendron simsii HOM05D004264 ORTHO05D004680 4.2e-25 119.0 107 55.1
Rhsim05G0223700 Rhododendron simsii HOM05D004264 ORTHO05D004680 5.4e-25 118.6 94 57.4
BcaB04g18563 Brassica carinata HOM05D004264 ORTHO05D004680 1.6e-24 117.1 191 32.5
vmacro20314 Vaccinium macrocarpon HOM05D004264 ORTHO05D004680 2.1e-24 116.7 107 53.3
EL10Ac5g12510 Beta vulgaris HOM05D004264 ORTHO05D004680 1.0e-23 114.4 197 33.5
Peaxi162Scf00522g00315 Petunia axillaris HOM05D004264 ORTHO05D004680 1.7e-23 113.6 158 39.9
Prupe.6G283000 Prunus persica HOM05D004264 ORTHO05D004680 5.1e-23 112.1 107 52.3
Aa31LG1G23180 Aethionema arabicum HOM05D004264 ORTHO05D004680 1.5e-22 110.5 163 38.7
Aqoxy3G03064 Aquilegia oxysepala HOM05D004264 ORTHO05D004680 5.6e-22 108.6 90 56.7
Cpa.g.sc120.22 Carica papaya HOM05D004264 ORTHO05D004680 9.6e-22 107.8 113 49.6
Aqoxy3G03065 Aquilegia oxysepala HOM05D004264 ORTHO05D004680 1.2e-21 107.5 103 51.5
RcHm_v2.0_Chr3g0462181 Rosa chinensis HOM05D004264 ORTHO05D004680 1.2e-21 107.5 107 47.7
vmacro05226 Vaccinium macrocarpon HOM05D004264 ORTHO05D004680 1.6e-21 107.1 107 50.5
vmacro05245 Vaccinium macrocarpon HOM05D004264 ORTHO05D004680 1.6e-21 107.1 107 50.5
Ciclev10013172m.g Citrus clementina HOM05D004264 ORTHO05D004680 3.6e-21 105.9 107 46.7
FAN14G2539 Fragaria x ananassa HOM05D004264 ORTHO05D004680 6.9e-20 101.7 107 44.9
HanXRQChr02g0036811 Helianthus annuus HOM05D004264 ORTHO05D004680 2.0e-19 100.1 107 48.6
Gohir.D11G227700 Gossypium hirsutum HOM05D004264 ORTHO05D004680 2.6e-19 99.8 107 47.7
C03p43950 Brassica napus HOM05D004264 ORTHO05D004680 4.4e-19 99.0 182 34.6
FvH4_6g10920 Fragaria vesca HOM05D004264 ORTHO05D004680 4.4e-19 99.0 107 43.9
Gohir.D10G240300 Gossypium hirsutum HOM05D004264 ORTHO05D004680 9.9e-19 97.8 107 47.7
CSS0010779 Camellia sinensis var. sinensis HOM05D004264 ORTHO05D004680 1.3e-18 97.4 81 58.0
Gorai.011G276000 Gossypium raimondii HOM05D004264 ORTHO05D004680 1.3e-18 97.4 107 47.7
HanXRQChr13g0390241 Helianthus annuus HOM05D004264 ORTHO05D004680 1.3e-18 97.4 107 48.6
RcHm_v2.0_Chr3g0462171 Rosa chinensis HOM05D004264 ORTHO05D004680 1.3e-18 97.4 85 51.8
Eucgr.G00894 Eucalyptus grandis HOM05D004264 ORTHO05D004680 2.9e-18 96.3 107 47.7
unitig_88.g27662 Utricularia gibba HOM05D004264 ORTHO05D004680 3.8e-18 95.9 184 32.1
DCAR_018676 Daucus carota HOM05D004264 ORTHO05D004680 1.1e-17 94.4 107 43.9
Sopen04g028370 Solanum pennellii HOM05D004264 ORTHO05D004680 5.4e-17 92.0 107 43.9
FvH4_6g10921 Fragaria vesca HOM05D004264 ORTHO05D004680 9.3e-17 91.3 85 48.2
MELO3C026013.2 Cucumis melo HOM05D004264 ORTHO05D004680 3.5e-16 89.4 107 41.1
SEGI_24150 Sequoiadendron giganteum HOM05D004264 ORTHO05D004680 6.0e-16 88.6 85 49.4
Os04g0445400 Oryza sativa ssp. japonica HOM05D004264 ORTHO05D004680 7.8e-16 88.2 190 30.0
MSTRG.5553 Avicennia marina HOM05D004264 ORTHO05D004680 2.3e-15 86.7 100 47.0
HPP92_011366 Vanilla planifolia HOM05D004264 ORTHO05D004680 8.7e-15 84.7 107 43.9
Gorai.004G074900 Gossypium raimondii HOM05D004264 ORTHO05D004680 1.1e-14 84.3 127 41.7
PSO782G0806 Papaver somniferum HOM05D004264 ORTHO05D004680 1.1e-14 84.3 66 65.2
arahy.Tifrunner.gnm1.ann1.IC5F1T Arachis hypogaea HOM05D004264 ORTHO05D004680 1.5e-14 84.0 82 47.6
HanXRQChr13g0390251 Helianthus annuus HOM05D004264 ORTHO05D004680 1.9e-14 83.6 60 61.7
PGSC0003DMG400031135 Solanum tuberosum HOM05D004264 ORTHO05D004680 3.3e-14 82.8 59 61.0
unitig_0.g2545 Utricularia gibba HOM05D004264 ORTHO05D004680 3.3e-14 82.8 135 33.3
Haze_21060 Corylus avellana HOM05D004264 ORTHO05D004680 4.3e-14 82.4 127 36.2
arahy.Tifrunner.gnm1.ann1.G0I7HS Arachis hypogaea HOM05D004264 ORTHO05D004680 5.6e-14 82.0 82 46.3
CAN.G564.4 Capsicum annuum HOM05D004264 ORTHO05D004680 9.6e-14 81.3 165 31.5
TPR.G1155 Trifolium pratense HOM05D004264 ORTHO05D004680 1.3e-13 80.9 68 52.9
Cpa.g.sc82.40 Carica papaya HOM05D004264 ORTHO05D004680 2.1e-13 80.1 87 42.5
Oeu005191.1 Olea europaea HOM05D004264 ORTHO05D004680 2.8e-13 79.7 55 63.6
HanXRQChr02g0036821 Helianthus annuus HOM05D004264 ORTHO05D004680 3.6e-13 79.3 60 56.7
BcaB04g18568 Brassica carinata HOM05D004264 ORTHO05D004680 3.1e-12 76.3 133 33.1
BcaC01g04201 Brassica carinata HOM05D004264 ORTHO05D004680 3.1e-12 76.3 133 33.1
BolC1t05486H Brassica oleracea HOM05D004264 ORTHO05D004680 3.1e-12 76.3 108 38.0
Gohir.D01G029100 Gossypium hirsutum HOM05D004264 ORTHO05D004680 4.0e-12 75.9 100 42.0
Gohir.D04G142200 Gossypium hirsutum HOM05D004264 ORTHO05D004680 5.3e-12 75.5 100 42.0
Potri.012G107200 Populus trichocarpa HOM05D004264 ORTHO05D004680 5.3e-12 75.5 54 61.1
VMungo1215G3396 Vigna mungo HOM05D004264 ORTHO05D004680 2.0e-11 73.6 56 57.1
DCAR_018675 Daucus carota HOM05D004264 ORTHO05D004680 2.6e-11 73.2 56 58.9
Gohir.D12G051300 Gossypium hirsutum HOM05D004264 ORTHO05D004680 2.6e-11 73.2 100 41.0
Gorai.004G095600 Gossypium raimondii HOM05D004264 ORTHO05D004680 2.6e-11 73.2 117 39.3
Ca_07679_v3 Cicer arietinum L. HOM05D004264 ORTHO05D004680 4.5e-11 72.4 56 53.6
Migut.J00117 Erythranthe guttata HOM05D004264 ORTHO05D004680 1.4e-09 67.4 107 37.4
Gorai.011G076200 Gossypium raimondii HOM05D004264 ORTHO05D004680 9.3e-09 64.7 73 45.2
Oeu041877.1 Olea europaea HOM05D004264 ORTHO05D004680 9.3e-09 64.7 49 59.2
Oeu041878.1 Olea europaea HOM05D004264 ORTHO05D004680 9.3e-09 64.7 49 59.2
Migut.J00116 Erythranthe guttata HOM05D004264 ORTHO05D004680 1.2e-08 64.3 59 50.8
BcaNung00021 Brassica carinata HOM05D004264 ORTHO05D004680 6.0e-08 62.0 109 36.7
SMO364G0587 Selaginella moellendorffii HOM05D004264 ORTHO05D004680 7.9e-08 61.6 94 31.9
Migut.D01629 Erythranthe guttata HOM05D004264 ORTHO05D004680 1.8e-07 60.5 107 33.6
BcaB05g23097 Brassica carinata HOM05D004264 ORTHO05D004680 3.0e-07 59.7 108 36.1
C03p54850 Brassica napus HOM05D004264 ORTHO05D004680 3.0e-07 59.7 100 34.0
AagrBONN_evm.TU.Sc2ySwM_344.2603 Anthoceros agrestis HOM05D004264 ORTHO05D004680 3.9e-07 59.3 157 24.8
BraA03t12802Z Brassica rapa HOM05D004264 ORTHO05D004680 6.7e-07 58.5 102 32.4
BcaC04g20357 Brassica carinata HOM05D004264 ORTHO05D004680 8.7e-07 58.2 100 34.0
SEGI_29872 Sequoiadendron giganteum HOM05D004264 ORTHO05D004680 8.7e-07 58.2 101 32.7
A03p36330 Brassica napus HOM05D004264 ORTHO05D004680 1.1e-06 57.8 102 32.4
A03p61420 Brassica napus HOM05D004264 ORTHO05D004680 4.3e-06 55.8 100 33.0


User provided reference genes

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