Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn8g40643 Nelumbo nucifera HOM05D004803 ORTHO05D005653 3.3e-13 77.0 37 100.0
Nn8g40644 Nelumbo nucifera HOM05D004803 ORTHO05D005653 1.2e-10 68.6 37 89.2
ECA240G2554 Erigeron canadensis HOM05D004803 ORTHO05D005653 2.6e-10 67.4 37 83.8
Glyma.05G221400 Glycine max HOM05D004803 ORTHO05D005653 4.5e-10 66.6 35 85.7
Glyma.08G027900 Glycine max HOM05D004803 ORTHO05D005653 5.9e-10 66.2 35 82.9
Aqoxy7G02691 Aquilegia oxysepala HOM05D004803 ORTHO05D005653 1.0e-09 65.5 37 83.8
FAN17G0329 Fragaria x ananassa HOM05D004803 ORTHO05D005653 1.0e-09 65.5 35 85.7
SalBow5G1850 Salvia bowleyana HOM05D004803 ORTHO05D005653 1.0e-09 65.5 35 85.7
Lsat_1_v5_gn_7_59621 Lactuca sativa HOM05D004803 ORTHO05D005653 1.3e-09 65.1 35 85.7
Lsat_1_v5_gn_7_59641 Lactuca sativa HOM05D004803 ORTHO05D005653 1.3e-09 65.1 35 85.7
CSS0040541 Camellia sinensis var. sinensis HOM05D004803 ORTHO05D005653 1.7e-09 64.7 35 85.7
Migut.B00847 Erythranthe guttata HOM05D004803 ORTHO05D005653 1.7e-09 64.7 35 85.7
MBI13_g31565_MAGBIO Magnolia biondii HOM05D004803 ORTHO05D005653 1.7e-09 64.7 35 82.9
Prupe.1G065700 Prunus persica HOM05D004803 ORTHO05D005653 1.7e-09 64.7 35 80.0
vmacro20779 Vaccinium macrocarpon HOM05D004803 ORTHO05D005653 1.7e-09 64.7 35 85.7
CAN.G54.3 Capsicum annuum HOM05D004803 ORTHO05D005653 2.2e-09 64.3 34 88.2
ClCG06G014040 Citrullus lanatus HOM05D004803 ORTHO05D005653 2.2e-09 64.3 35 85.7
MELO3C019213.2 Cucumis melo HOM05D004803 ORTHO05D005653 2.2e-09 64.3 35 85.7
Hma1.2p1_0284F.1_g113820 Hydrangea macrophylla HOM05D004803 ORTHO05D005653 2.2e-09 64.3 35 85.7
Hma1.2p1_0418F.1_g149310 Hydrangea macrophylla HOM05D004803 ORTHO05D005653 2.2e-09 64.3 34 88.2
MD13G1234800 Malus domestica HOM05D004803 ORTHO05D005653 2.2e-09 64.3 35 82.9
MD16G1239600 Malus domestica HOM05D004803 ORTHO05D005653 2.2e-09 64.3 35 82.9
Nitab4.5_0000413g0050 Nicotiana tabacum HOM05D004803 ORTHO05D005653 2.2e-09 64.3 34 88.2
Nitab4.5_0005014g0030 Nicotiana tabacum HOM05D004803 ORTHO05D005653 2.2e-09 64.3 34 88.2
Peaxi162Scf00320g00053 Petunia axillaris HOM05D004803 ORTHO05D005653 2.2e-09 64.3 34 88.2
Sed0007901 Sechium edule HOM05D004803 ORTHO05D005653 2.2e-09 64.3 35 85.7
Solyc07g015970.3 Solanum lycopersicum HOM05D004803 ORTHO05D005653 2.2e-09 64.3 34 88.2
TAR636G2654 Trochodendron aralioides HOM05D004803 ORTHO05D005653 2.2e-09 64.3 35 85.7
CiPaw.15G155100 Carya illinoinensis HOM05D004803 ORTHO05D005653 2.9e-09 63.9 35 82.9
CsaV3_2G035410 Cucumis sativus L. HOM05D004803 ORTHO05D005653 2.9e-09 63.9 35 82.9
FvH4_4g06260 Fragaria vesca HOM05D004803 ORTHO05D005653 2.9e-09 63.9 35 80.0
FAN12G1038 Fragaria x ananassa HOM05D004803 ORTHO05D005653 2.9e-09 63.9 35 80.0
FAN22G0315 Fragaria x ananassa HOM05D004803 ORTHO05D005653 2.9e-09 63.9 35 80.0
Manes.12G104200 Manihot esculenta HOM05D004803 ORTHO05D005653 2.9e-09 63.9 35 85.7
Sopen07g005800 Solanum pennellii HOM05D004803 ORTHO05D005653 2.9e-09 63.9 34 85.3
Sopen07g005820 Solanum pennellii HOM05D004803 ORTHO05D005653 2.9e-09 63.9 34 85.3
FAN07G1450 Fragaria x ananassa HOM05D004803 ORTHO05D005653 3.8e-09 63.5 35 80.0
Lalb_Chr16g0390871 Lupinus albus HOM05D004803 ORTHO05D005653 3.8e-09 63.5 35 82.9
Nitab4.5_0004188g0060 Nicotiana tabacum HOM05D004803 ORTHO05D005653 3.8e-09 63.5 34 85.3
Nitab4.5_0005411g0060 Nicotiana tabacum HOM05D004803 ORTHO05D005653 3.8e-09 63.5 34 85.3
RcHm_v2.0_Chr4g0397981 Rosa chinensis HOM05D004803 ORTHO05D005653 3.8e-09 63.5 35 77.1
Solyc05g047390.1 Solanum lycopersicum HOM05D004803 ORTHO05D005653 3.8e-09 63.5 34 85.3
Sopen05g027700 Solanum pennellii HOM05D004803 ORTHO05D005653 3.8e-09 63.5 34 85.3
PGSC0003DMG400021021 Solanum tuberosum HOM05D004803 ORTHO05D005653 3.8e-09 63.5 34 85.3
PGSC0003DMG402013687 Solanum tuberosum HOM05D004803 ORTHO05D005653 3.8e-09 63.5 34 85.3
Cfa020735 Carpinus fangiana HOM05D004803 ORTHO05D005653 5.0e-09 63.2 35 82.9
Gohir.A13G115000 Gossypium hirsutum HOM05D004803 ORTHO05D005653 5.0e-09 63.2 35 82.9
Gohir.D13G117900 Gossypium hirsutum HOM05D004803 ORTHO05D005653 5.0e-09 63.2 35 82.9
Gorai.013G132400 Gossypium raimondii HOM05D004803 ORTHO05D005653 5.0e-09 63.2 35 82.9
Manes.13G122700 Manihot esculenta HOM05D004803 ORTHO05D005653 5.0e-09 63.2 35 82.9
Potri.006G077500 Populus trichocarpa HOM05D004803 ORTHO05D005653 5.0e-09 63.2 36 77.8
Carub.0002s0057 Capsella rubella HOM05D004803 ORTHO05D005653 6.5e-09 62.8 35 80.0
AUR62001322 Chenopodium quinoa HOM05D004803 ORTHO05D005653 6.5e-09 62.8 37 75.7
AUR62025705 Chenopodium quinoa HOM05D004803 ORTHO05D005653 6.5e-09 62.8 37 75.7
Eucgr.H00014 Eucalyptus grandis HOM05D004803 ORTHO05D005653 6.5e-09 62.8 36 77.8
HanXRQChr14g0437441 Helianthus annuus HOM05D004803 ORTHO05D005653 6.5e-09 62.8 35 77.1
Potri.018G146602 Populus trichocarpa HOM05D004803 ORTHO05D005653 6.5e-09 62.8 36 77.8
QL11p009265 Quercus lobata HOM05D004803 ORTHO05D005653 6.5e-09 62.8 35 80.0
TWI14G1226 Tripterygium wilfordii HOM05D004803 ORTHO05D005653 6.5e-09 62.8 35 82.9
Atru.chr7.977 Acer truncatum HOM05D004803 ORTHO05D005653 8.5e-09 62.4 35 82.9
Cpa.g.sc116.72 Carica papaya HOM05D004803 ORTHO05D005653 8.5e-09 62.4 35 80.0
Ciclev10003057m.g Citrus clementina HOM05D004803 ORTHO05D005653 8.5e-09 62.4 35 82.9
MBI11_g11974_MAGBIO Magnolia biondii HOM05D004803 ORTHO05D005653 8.5e-09 62.4 37 75.7
Thecc.07G084900 Theobroma cacao HOM05D004803 ORTHO05D005653 8.5e-09 62.4 35 80.0
Nitab4.5_0010123g0030 Nicotiana tabacum HOM05D004803 ORTHO05D005653 1.1e-08 62.0 34 85.3
Phvul.002G303100 Phaseolus vulgaris HOM05D004803 ORTHO05D005653 1.1e-08 62.0 35 80.0
TPR.G25472 Trifolium pratense HOM05D004803 ORTHO05D005653 1.1e-08 62.0 35 80.0
HPP92_006365 Vanilla planifolia HOM05D004803 ORTHO05D005653 1.1e-08 62.0 35 74.3
COL.COLO4_24021 Corchorus olitorius HOM05D004803 ORTHO05D005653 1.4e-08 61.6 35 80.0
TWI39G0014 Tripterygium wilfordii HOM05D004803 ORTHO05D005653 1.4e-08 61.6 35 82.9
Duzib106G0817 Durio zibethinus HOM05D004803 ORTHO05D005653 2.5e-08 60.8 35 80.0
Medtr3g462060 Medicago truncatula HOM05D004803 ORTHO05D005653 2.5e-08 60.8 35 77.1
Ca_17414_v3 Cicer arietinum L. HOM05D004803 ORTHO05D005653 3.2e-08 60.5 35 71.4
Ciclev10023194m.g Citrus clementina HOM05D004803 ORTHO05D005653 3.2e-08 60.5 35 74.3
Duzib128G1472 Durio zibethinus HOM05D004803 ORTHO05D005653 3.2e-08 60.5 35 77.1
PGR083G2338 Punica granatum HOM05D004803 ORTHO05D005653 3.2e-08 60.5 35 77.1
Medtr2g067370 Medicago truncatula HOM05D004803 ORTHO05D005653 4.2e-08 60.1 35 74.3
Os01g0732000 Oryza sativa ssp. japonica HOM05D004803 ORTHO05D005653 4.2e-08 60.1 37 73.0
CANSAT80G0011 Cannabis sativa HOM05D004803 ORTHO05D005653 5.5e-08 59.7 35 77.1
Pp3c14_20040 Physcomitrium patens HOM05D004803 ORTHO05D005653 5.5e-08 59.7 35 71.4
Zm00001eb358730 Zea mays HOM05D004803 ORTHO05D005653 5.5e-08 59.7 35 74.3
Medtr3g055500 Medicago truncatula HOM05D004803 ORTHO05D005653 7.2e-08 59.3 35 74.3
Potri.018G145502 Populus trichocarpa HOM05D004803 ORTHO05D005653 7.2e-08 59.3 36 72.2
CARHR046710 Cardamine hirsuta HOM05D004803 ORTHO05D005653 9.4e-08 58.9 35 74.3
Thhalv10023788m.g Eutrema salsugineum HOM05D004803 ORTHO05D005653 9.4e-08 58.9 35 74.3
Ah.08g217890 Amaranthus hybridus HOM05D004803 ORTHO05D005653 1.2e-07 58.5 37 70.3
AT5G41685 Arabidopsis thaliana HOM05D004803 ORTHO05D005653 1.2e-07 58.5 35 71.4
BcaC08g44541 Brassica carinata HOM05D004803 ORTHO05D005653 1.2e-07 58.5 35 74.3
Carub.0007s3380 Capsella rubella HOM05D004803 ORTHO05D005653 1.2e-07 58.5 35 74.3
CARHR272970 Cardamine hirsuta HOM05D004803 ORTHO05D005653 1.2e-07 58.5 35 74.3
Thhalv10028124m.g Eutrema salsugineum HOM05D004803 ORTHO05D005653 1.2e-07 58.5 35 74.3
Mapoly0024s0138 Marchantia polymorpha HOM05D004803 ORTHO05D005653 1.2e-07 58.5 37 70.3
Pp3c17_18760 Physcomitrium patens HOM05D004803 ORTHO05D005653 1.2e-07 58.5 35 68.6
THA.LOC104823604 Tarenaya hassleriana HOM05D004803 ORTHO05D005653 1.2e-07 58.5 35 74.3
BcaB06g27645 Brassica carinata HOM05D004803 ORTHO05D005653 1.6e-07 58.2 35 71.4
BcaC02g08933 Brassica carinata HOM05D004803 ORTHO05D005653 1.6e-07 58.2 35 71.4
A04p14790 Brassica napus HOM05D004803 ORTHO05D005653 1.6e-07 58.2 35 71.4
A04p14850 Brassica napus HOM05D004803 ORTHO05D005653 1.6e-07 58.2 35 71.4
A04p18870 Brassica napus HOM05D004803 ORTHO05D005653 1.6e-07 58.2 35 71.4
C04p48720 Brassica napus HOM05D004803 ORTHO05D005653 1.6e-07 58.2 35 71.4
C04p48770 Brassica napus HOM05D004803 ORTHO05D005653 1.6e-07 58.2 35 71.4
C04p48830 Brassica napus HOM05D004803 ORTHO05D005653 1.6e-07 58.2 35 71.4
BolC4t26463H Brassica oleracea HOM05D004803 ORTHO05D005653 1.6e-07 58.2 35 71.4
BolC4t26468H Brassica oleracea HOM05D004803 ORTHO05D005653 1.6e-07 58.2 35 71.4
BraA04t17117Z Brassica rapa HOM05D004803 ORTHO05D005653 1.6e-07 58.2 35 71.4
BraA04t17123Z Brassica rapa HOM05D004803 ORTHO05D005653 1.6e-07 58.2 35 71.4
MD15G1094200 Malus domestica HOM05D004803 ORTHO05D005653 1.6e-07 58.2 35 74.3
Sp7g00380 Schrenkiella parvula HOM05D004803 ORTHO05D005653 1.6e-07 58.2 35 71.4
Aa31LG9G390 Aethionema arabicum HOM05D004803 ORTHO05D005653 2.1e-07 57.8 35 68.6
BcaB07g31446 Brassica carinata HOM05D004803 ORTHO05D005653 2.1e-07 57.8 35 68.6
unitig_899.g15187 Utricularia gibba HOM05D004803 ORTHO05D005653 2.1e-07 57.8 35 68.6
Aa31LG2G1260 Aethionema arabicum HOM05D004803 ORTHO05D005653 2.7e-07 57.4 35 68.6
AL2G10780 Arabidopsis lyrata HOM05D004803 ORTHO05D005653 2.7e-07 57.4 35 71.4
AL7G47670 Arabidopsis lyrata HOM05D004803 ORTHO05D005653 2.7e-07 57.4 35 74.3
Cc00_g00470 Coffea canephora HOM05D004803 ORTHO05D005653 2.7e-07 57.4 35 68.6
DCAR_019792 Daucus carota HOM05D004803 ORTHO05D005653 2.7e-07 57.4 35 62.9
Lsat_1_v5_gn_7_59661 Lactuca sativa HOM05D004803 ORTHO05D005653 2.7e-07 57.4 35 77.1
Sc12g0011260 Simmondsia chinensis HOM05D004803 ORTHO05D005653 2.7e-07 57.4 37 62.2
BcaB02g07882 Brassica carinata HOM05D004803 ORTHO05D005653 3.6e-07 57.0 35 68.6
THA.LOC104817698 Tarenaya hassleriana HOM05D004803 ORTHO05D005653 3.6e-07 57.0 35 71.4
Sp7g21690 Schrenkiella parvula HOM05D004803 ORTHO05D005653 4.7e-07 56.6 35 65.7
CARHR231140 Cardamine hirsuta HOM05D004803 ORTHO05D005653 6.1e-07 56.2 35 65.7
PSO063G0965 Papaver somniferum HOM05D004803 ORTHO05D005653 6.1e-07 56.2 35 68.6
Psat7g021680 Pisum sativum HOM05D004803 ORTHO05D005653 7.9e-07 55.8 35 62.9
Aa31LG6G6980 Aethionema arabicum HOM05D004803 ORTHO05D005653 1.4e-06 55.1 35 65.7
AT1G64220 Arabidopsis thaliana HOM05D004803 ORTHO05D005653 1.4e-06 55.1 35 68.6
BcaB07g31518 Brassica carinata HOM05D004803 ORTHO05D005653 1.8e-06 54.7 35 65.7
Os01g0626300 Oryza sativa ssp. japonica HOM05D004803 ORTHO05D005653 1.8e-06 54.7 35 62.9
Os05g0583400 Oryza sativa ssp. japonica HOM05D004803 ORTHO05D005653 2.3e-06 54.3 37 64.9
Medtr3g061970 Medicago truncatula HOM05D004803 ORTHO05D005653 3.0e-06 53.9 35 68.6
CBR_g29720 Chara braunii HOM05D004803 ORTHO05D005653 8.8e-06 52.4 35 60.0


User provided reference genes

Program Settings