Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn8g40464 Nelumbo nucifera HOM05D006510 ORTHO05D008171 0.0e+00 1705.6 871 100.0
TAR636G1540 Trochodendron aralioides HOM05D006510 ORTHO05D008171 0.0e+00 1222.6 872 73.4
QL08p042146 Quercus lobata HOM05D006510 ORTHO05D008171 0.0e+00 1129.8 875 67.3
Thecc.01G152700 Theobroma cacao HOM05D006510 ORTHO05D008171 0.0e+00 1109.7 876 66.8
MBI16_g39629_MAGBIO Magnolia biondii HOM05D006510 ORTHO05D008171 0.0e+00 1109.0 873 66.7
Cfa021921 Carpinus fangiana HOM05D006510 ORTHO05D008171 0.0e+00 1107.0 875 66.3
COL.COLO4_33599 Corchorus olitorius HOM05D006510 ORTHO05D008171 0.0e+00 1102.4 876 66.3
Duzib147G0397 Durio zibethinus HOM05D006510 ORTHO05D008171 0.0e+00 1092.0 876 66.2
PSO782G3259 Papaver somniferum HOM05D006510 ORTHO05D008171 0.0e+00 1089.3 869 66.1
Aqoxy5G02856 Aquilegia oxysepala HOM05D006510 ORTHO05D008171 0.0e+00 1086.2 876 64.7
Hma1.2p1_0178F.1_g078710 Hydrangea macrophylla HOM05D006510 ORTHO05D008171 0.0e+00 1076.2 879 65.2
CSS0034147 Camellia sinensis var. sinensis HOM05D006510 ORTHO05D008171 0.0e+00 1075.8 877 65.0
CSS0039339 Camellia sinensis var. sinensis HOM05D006510 ORTHO05D008171 0.0e+00 1075.5 877 64.9
CiPaw.03G194300 Carya illinoinensis HOM05D006510 ORTHO05D008171 2.4e-311 1072.0 877 64.4
GSVIVG01020726001 Vitis vinifera HOM05D006510 ORTHO05D008171 3.5e-310 1068.1 875 65.1
Glyma.12G129300 Glycine max HOM05D006510 ORTHO05D008171 7.7e-310 1067.0 872 64.9
Potri.014G142900 Populus trichocarpa HOM05D006510 ORTHO05D008171 1.3e-309 1066.2 878 64.7
Rhsim04G0074900 Rhododendron simsii HOM05D006510 ORTHO05D008171 6.5e-309 1063.9 878 63.7
arahy.Tifrunner.gnm1.ann1.J1H900 Arachis hypogaea HOM05D006510 ORTHO05D008171 4.2e-308 1061.2 878 64.2
Glyma.06G276100 Glycine max HOM05D006510 ORTHO05D008171 2.7e-307 1058.5 876 64.7
Atru.chr6.2773 Acer truncatum HOM05D006510 ORTHO05D008171 1.0e-306 1056.6 872 64.9
arahy.Tifrunner.gnm1.ann1.JGR80D Arachis hypogaea HOM05D006510 ORTHO05D008171 1.4e-306 1056.2 878 64.0
Lalb_Chr24g0400131 Lupinus albus HOM05D006510 ORTHO05D008171 2.3e-306 1055.4 876 64.7
TWI38G0436 Tripterygium wilfordii HOM05D006510 ORTHO05D008171 2.3e-306 1055.4 876 64.6
Lj3g0027149 Lotus japonicus HOM05D006510 ORTHO05D008171 3.0e-306 1055.0 877 64.5
Phvul.011G128400 Phaseolus vulgaris HOM05D006510 ORTHO05D008171 1.1e-305 1053.1 872 64.6
TPR.G13821 Trifolium pratense HOM05D006510 ORTHO05D008171 7.4e-305 1050.4 876 63.7
Prupe.3G115700 Prunus persica HOM05D006510 ORTHO05D008171 9.7e-305 1050.0 879 64.3
Ciclev10014241m.g Citrus clementina HOM05D006510 ORTHO05D008171 1.3e-304 1049.7 877 63.5
Haze_13408 Corylus avellana HOM05D006510 ORTHO05D008171 1.3e-304 1049.7 843 65.4
PSO478G4451 Papaver somniferum HOM05D006510 ORTHO05D008171 1.7e-304 1049.3 870 64.7
FAN14G1437 Fragaria x ananassa HOM05D006510 ORTHO05D008171 1.2e-302 1043.1 881 64.4
FvH4_6g27600 Fragaria vesca HOM05D006510 ORTHO05D008171 1.6e-302 1042.7 881 64.4
FAN05G5099 Fragaria x ananassa HOM05D006510 ORTHO05D008171 1.6e-302 1042.7 878 64.9
FAN02G4134 Fragaria x ananassa HOM05D006510 ORTHO05D008171 1.0e-301 1040.0 878 64.5
Gohir.A09G003200 Gossypium hirsutum HOM05D006510 ORTHO05D008171 3.8e-301 1038.1 879 63.6
TPR.G16532 Trifolium pratense HOM05D006510 ORTHO05D008171 6.5e-301 1037.3 873 63.0
Gorai.006G003700 Gossypium raimondii HOM05D006510 ORTHO05D008171 2.5e-300 1035.4 879 63.3
RcHm_v2.0_Chr2g0130091 Rosa chinensis HOM05D006510 ORTHO05D008171 5.5e-300 1034.2 878 63.7
MD11G1004500 Malus domestica HOM05D006510 ORTHO05D008171 6.7e-298 1027.3 882 63.7
PGR142G2695 Punica granatum HOM05D006510 ORTHO05D008171 2.6e-297 1025.4 875 61.0
Actinidia03942 Actinidia chinensis HOM05D006510 ORTHO05D008171 1.1e-295 1020.0 835 64.1
CANSAT78G1126 Cannabis sativa HOM05D006510 ORTHO05D008171 1.1e-295 1020.0 880 61.8
Eucgr.K01140 Eucalyptus grandis HOM05D006510 ORTHO05D008171 4.1e-295 1018.1 872 60.9
Lj8C100T15 Lonicera japonica HOM05D006510 ORTHO05D008171 2.0e-294 1015.8 899 61.3
DCAR_013276 Daucus carota HOM05D006510 ORTHO05D008171 5.0e-293 1011.1 883 62.5
Sabra14G0108000 Salix brachista HOM05D006510 ORTHO05D008171 1.1e-292 1010.0 879 62.7
Psat7g163800 Pisum sativum HOM05D006510 ORTHO05D008171 1.5e-292 1009.6 875 62.1
Ca_18866_v3 Cicer arietinum L. HOM05D006510 ORTHO05D008171 4.2e-292 1008.1 875 61.8
MELO3C002806.2 Cucumis melo HOM05D006510 ORTHO05D008171 5.5e-292 1007.7 877 61.8
CAN.G1716.4 Capsicum annuum HOM05D006510 ORTHO05D008171 4.7e-291 1004.6 870 62.3
CsaV3_1G037360 Cucumis sativus L. HOM05D006510 ORTHO05D008171 1.0e-290 1003.4 877 62.0
Manes.07G057100 Manihot esculenta HOM05D006510 ORTHO05D008171 3.0e-290 1001.9 879 61.2
ClCG07G002720 Citrullus lanatus HOM05D006510 ORTHO05D008171 5.2e-290 1001.1 883 61.9
PGSC0003DMG400015368 Solanum tuberosum HOM05D006510 ORTHO05D008171 5.4e-287 991.1 872 61.7
Medtr4g080110 Medicago truncatula HOM05D006510 ORTHO05D008171 2.7e-286 988.8 878 60.1
Migut.M00272 Erythranthe guttata HOM05D006510 ORTHO05D008171 2.9e-285 985.3 879 60.8
Sopen12g005700 Solanum pennellii HOM05D006510 ORTHO05D008171 2.9e-285 985.3 874 61.9
Solyc12g013950.2 Solanum lycopersicum HOM05D006510 ORTHO05D008171 8.6e-285 983.8 873 62.0
Peaxi162Scf00229g01116 Petunia axillaris HOM05D006510 ORTHO05D008171 5.5e-284 981.1 860 62.0
Cc05_g08450 Coffea canephora HOM05D006510 ORTHO05D008171 1.2e-283 979.9 874 60.4
Nitab4.5_0002027g0190 Nicotiana tabacum HOM05D006510 ORTHO05D008171 2.3e-282 975.7 859 61.7
Gohir.D09G003000 Gossypium hirsutum HOM05D006510 ORTHO05D008171 2.0e-281 972.6 879 60.6
THA.LOC104823853 Tarenaya hassleriana HOM05D006510 ORTHO05D008171 4.5e-278 961.4 882 58.7
Sed0011358 Sechium edule HOM05D006510 ORTHO05D008171 2.3e-277 959.1 878 59.6
Thhalv10016247m.g Eutrema salsugineum HOM05D006510 ORTHO05D008171 2.5e-276 955.7 881 58.1
CARHR137800 Cardamine hirsuta HOM05D006510 ORTHO05D008171 6.1e-275 951.0 882 57.6
AT2G42700 Arabidopsis thaliana HOM05D006510 ORTHO05D008171 1.8e-274 949.5 880 57.5
Sp4g24850 Schrenkiella parvula HOM05D006510 ORTHO05D008171 8.9e-274 947.2 881 57.8
ECA248G1772 Erigeron canadensis HOM05D006510 ORTHO05D008171 3.4e-273 945.3 875 58.2
AL4G41260 Arabidopsis lyrata HOM05D006510 ORTHO05D008171 4.4e-273 944.9 880 57.2
Carub.0004s2514 Capsella rubella HOM05D006510 ORTHO05D008171 4.4e-273 944.9 881 57.1
Aa31LG1G24480 Aethionema arabicum HOM05D006510 ORTHO05D008171 7.8e-270 934.1 926 55.5
C04p03920 Brassica napus HOM05D006510 ORTHO05D008171 8.6e-269 930.6 882 56.7
Nitab4.5_0006142g0020 Nicotiana tabacum HOM05D006510 ORTHO05D008171 2.3e-266 922.5 859 59.3
BraA05t19323Z Brassica rapa HOM05D006510 ORTHO05D008171 8.9e-266 920.6 882 56.3
EL10Ac9g20963 Beta vulgaris HOM05D006510 ORTHO05D008171 1.5e-265 919.8 865 57.8
A05p03350 Brassica napus HOM05D006510 ORTHO05D008171 5.8e-265 917.9 880 56.5
ATR0796G261 Amborella trichopoda HOM05D006510 ORTHO05D008171 2.7e-262 909.1 861 58.5
Oeu001793.2 Olea europaea HOM05D006510 ORTHO05D008171 2.3e-261 906.0 811 60.3
AUR62041733 Chenopodium quinoa HOM05D006510 ORTHO05D008171 2.8e-259 899.0 865 56.3
VMungo1127G1883 Vigna mungo HOM05D006510 ORTHO05D008171 4.0e-258 895.2 761 63.1
Hma1.2p1_0178F.1_g078700 Hydrangea macrophylla HOM05D006510 ORTHO05D008171 1.3e-256 890.2 835 59.3
CDE04G2642 Ceratophyllum demersum HOM05D006510 ORTHO05D008171 7.1e-255 884.4 882 54.9
Os11g0169100 Oryza sativa ssp. japonica HOM05D006510 ORTHO05D008171 2.7e-254 882.5 879 55.6
Sc12g0003550 Simmondsia chinensis HOM05D006510 ORTHO05D008171 1.1e-252 877.1 815 58.7
BolC4t22028H Brassica oleracea HOM05D006510 ORTHO05D008171 6.8e-250 867.8 840 55.7
unitig_46.g18272 Utricularia gibba HOM05D006510 ORTHO05D008171 7.1e-247 857.8 877 52.8
AUR62029599 Chenopodium quinoa HOM05D006510 ORTHO05D008171 1.3e-245 853.6 857 54.5
FAN09G2536 Fragaria x ananassa HOM05D006510 ORTHO05D008171 6.6e-245 851.3 764 62.4
Lsat_1_v5_gn_4_64481 Lactuca sativa HOM05D006510 ORTHO05D008171 1.5e-244 850.1 877 53.2
Ah.01g004980 Amaranthus hybridus HOM05D006510 ORTHO05D008171 1.6e-243 846.7 830 55.5
HPP92_014652 Vanilla planifolia HOM05D006510 ORTHO05D008171 3.4e-241 839.0 873 55.3
SGA_v2.0_scaffold9G04837 Striga asiatica HOM05D006510 ORTHO05D008171 1.9e-239 833.2 873 53.6
arahy.Tifrunner.gnm1.ann1.H5IL2E Arachis hypogaea HOM05D006510 ORTHO05D008171 8.4e-224 781.2 648 64.0
vmacro09212 Vaccinium macrocarpon HOM05D006510 ORTHO05D008171 5.1e-213 745.3 818 51.8
Dinv07684 Davidia involucrata HOM05D006510 ORTHO05D008171 3.2e-207 726.1 690 59.0
Zm00001eb297610 Zea mays HOM05D006510 ORTHO05D008171 3.3e-204 716.1 761 52.6
TAR629G2876 Trochodendron aralioides HOM05D006510 ORTHO05D008171 3.0e-189 666.4 522 69.3
SEGI_27047 Sequoiadendron giganteum HOM05D006510 ORTHO05D008171 2.2e-179 633.6 727 50.2
SalBow7G4578 Salvia bowleyana HOM05D006510 ORTHO05D008171 2.5e-143 513.8 431 61.7
Pp3c9_21860 Physcomitrium patens HOM05D006510 ORTHO05D008171 1.6e-142 511.1 881 37.1
Mapoly0047s0091 Marchantia polymorpha HOM05D006510 ORTHO05D008171 8.9e-141 505.4 854 37.5
SMO164G0050 Selaginella moellendorffii HOM05D006510 ORTHO05D008171 2.8e-134 483.8 860 37.8
CBR_g35046 Chara braunii HOM05D006510 ORTHO05D008171 8.4e-99 365.9 991 31.3
Cpa.g.sc52.162 Carica papaya HOM05D006510 ORTHO05D008171 5.0e-91 340.1 327 56.9
Cpa.g.sc52.161 Carica papaya HOM05D006510 ORTHO05D008171 6.6e-51 206.8 180 61.1
Dinv07685 Davidia involucrata HOM05D006510 ORTHO05D008171 2.6e-31 141.7 100 72.0
TAR629G0105 Trochodendron aralioides HOM05D006510 ORTHO05D008171 7.1e-29 133.7 151 51.7
Cre11.g479200 Chlamydomonas reinhardtii HOM05D006510 ORTHO05D008171 1.3e-22 112.8 608 21.9
Cpa.g.c45723 Carica papaya HOM05D006510 ORTHO05D008171 1.6e-20 105.9 63 79.4
VMungo1127G1894 Vigna mungo HOM05D006510 ORTHO05D008171 6.6e-19 100.5 65 72.3
Hund07777 Selenicereus undatus HOM05D006510 ORTHO05D008171 2.1e-17 95.5 67 70.1
unitig_46.g18270 Utricularia gibba HOM05D006510 ORTHO05D008171 5.8e-15 87.4 65 63.1
MCO09G591 Micromonas commoda HOM05D006510 ORTHO05D008171 7.6e-15 87.0 587 22.8
HanXRQChr09g0251831 Helianthus annuus HOM05D006510 ORTHO05D008171 9.9e-15 86.7 57 73.7
Solyc01g011190.1 Solanum lycopersicum HOM05D006510 ORTHO05D008171 1.3e-11 76.3 57 68.4
Solyc01g011180.1 Solanum lycopersicum HOM05D006510 ORTHO05D008171 3.0e-11 75.1 57 68.4
BcaB01g03423 Brassica carinata HOM05D001990 ORTHO05D002033 1.6e-09 69.3 105 42.9
SEGI_32298 Sequoiadendron giganteum HOM05D006510 ORTHO05D008171 1.8e-08 65.9 51 56.9
BraA03t11594Z Brassica rapa HOM05D006510 ORTHO05D008171 3.1e-08 65.1 99 45.5
arahy.Tifrunner.gnm1.ann1.JPYC3C Arachis hypogaea HOM05D006510 ORTHO05D008171 1.2e-07 63.2 42 66.7
Lsat_1_v5_gn_4_67501 Lactuca sativa HOM05D001373 ORTHO05D001330 1.3e-06 59.7 41 65.9


User provided reference genes

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