Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn8g40377 Nelumbo nucifera HOM05D008002 ORTHO05D010148 2.8e-111 405.2 195 100.0
Nn2g12628 Nelumbo nucifera HOM05D008002 ORTHO05D010148 1.8e-94 349.4 196 87.2
TAR376G1088 Trochodendron aralioides HOM05D008002 ORTHO05D010148 2.3e-65 252.7 197 65.0
Hund00100 Selenicereus undatus HOM05D008002 ORTHO05D010148 2.3e-57 226.1 200 59.5
MD05G1143100 Malus domestica HOM05D008002 ORTHO05D010148 4.0e-57 225.3 208 60.1
MD10G1142900 Malus domestica HOM05D008002 ORTHO05D010148 5.8e-56 221.5 212 59.0
QL11p056798 Quercus lobata HOM05D000114 ORTHO05D009898 2.4e-54 216.1 221 54.8
PSO541G1248 Papaver somniferum HOM05D008002 ORTHO05D010148 2.0e-53 213.0 212 53.8
GSVIVG01023858001 Vitis vinifera HOM05D008002 ORTHO05D010148 5.0e-52 208.4 205 55.1
Thecc.02G147800 Theobroma cacao HOM05D008002 ORTHO05D010148 8.6e-52 207.6 209 54.1
FAN15G1289 Fragaria x ananassa HOM05D008002 ORTHO05D010148 1.1e-51 207.2 211 55.5
RcHm_v2.0_Chr6g0281201 Rosa chinensis HOM05D008002 ORTHO05D010148 1.1e-51 207.2 211 55.9
Eucgr.I01542 Eucalyptus grandis HOM05D008002 ORTHO05D010148 1.5e-51 206.8 212 54.7
FvH4_2g17020 Fragaria vesca HOM05D008002 ORTHO05D010148 1.5e-51 206.8 211 55.0
FAN24G1487 Fragaria x ananassa HOM05D008002 ORTHO05D010148 1.5e-51 206.8 211 55.0
FAN27G2383 Fragaria x ananassa HOM05D008002 ORTHO05D010148 2.5e-51 206.1 211 55.5
Actinidia20583 Actinidia chinensis HOM05D008002 ORTHO05D010148 9.5e-51 204.1 197 56.3
Duzib132G1147 Durio zibethinus HOM05D008002 ORTHO05D010148 2.8e-50 202.6 212 51.4
Actinidia17988 Actinidia chinensis HOM05D008002 ORTHO05D010148 3.6e-50 202.2 198 55.6
Gorai.012G138300 Gossypium raimondii HOM05D008002 ORTHO05D010148 3.6e-50 202.2 210 52.9
CANSAT25G0111 Cannabis sativa HOM05D008002 ORTHO05D010148 6.2e-50 201.4 206 52.9
Duzib248G0441 Durio zibethinus HOM05D008002 ORTHO05D010148 8.1e-50 201.1 212 52.4
Prupe.8G181900 Prunus persica HOM05D008002 ORTHO05D010148 8.1e-50 201.1 209 56.5
Gohir.A04G111300 Gossypium hirsutum HOM05D008002 ORTHO05D010148 1.4e-49 200.3 210 52.4
CiPaw.05G094700 Carya illinoinensis HOM05D008002 ORTHO05D010148 3.1e-49 199.1 188 55.3
CsaV3_7G002100 Cucumis sativus L. HOM05D008002 ORTHO05D010148 5.2e-49 198.4 210 51.9
Gohir.D04G151600 Gossypium hirsutum HOM05D008002 ORTHO05D010148 6.8e-49 198.0 210 51.9
Sc08g0002060 Simmondsia chinensis HOM05D008002 ORTHO05D010148 6.8e-49 198.0 206 54.9
Haze_01959 Corylus avellana HOM05D008002 ORTHO05D010148 8.9e-49 197.6 199 54.8
Dinv14183 Davidia involucrata HOM05D008002 ORTHO05D010148 1.5e-48 196.8 201 53.7
MELO3C015697.2 Cucumis melo HOM05D008002 ORTHO05D010148 3.4e-48 195.7 211 50.7
Gohir.D02G193300 Gossypium hirsutum HOM05D008002 ORTHO05D010148 3.4e-48 195.7 212 53.8
Gohir.A03G170200 Gossypium hirsutum HOM05D008002 ORTHO05D010148 7.5e-48 194.5 212 52.8
Potri.004G208200 Populus trichocarpa HOM05D008002 ORTHO05D010148 1.7e-47 193.4 202 53.5
Gorai.005G216100 Gossypium raimondii HOM05D008002 ORTHO05D010148 2.2e-47 193.0 212 52.4
Sabra04G0140100 Salix brachista HOM05D008002 ORTHO05D010148 6.4e-47 191.4 201 54.7
TWI75G0824 Tripterygium wilfordii HOM05D008002 ORTHO05D010148 1.1e-46 190.7 221 47.5
Potri.009G169400 Populus trichocarpa HOM05D008002 ORTHO05D010148 1.2e-45 187.2 203 51.7
Atru.chr5.3576 Acer truncatum HOM05D008002 ORTHO05D010148 1.6e-45 186.8 198 51.5
Aqoxy6G02976 Aquilegia oxysepala HOM05D008002 ORTHO05D010148 2.7e-45 186.0 237 45.6
Gohir.D13G057750 Gossypium hirsutum HOM05D008002 ORTHO05D010148 4.6e-45 185.3 215 52.1
Gorai.013G065000 Gossypium raimondii HOM05D008002 ORTHO05D010148 2.3e-44 183.0 215 51.6
Rhsim11G0198500 Rhododendron simsii HOM05D008002 ORTHO05D010148 6.6e-44 181.4 190 50.0
Cfa005392 Carpinus fangiana HOM05D008002 ORTHO05D010148 1.1e-43 180.6 187 51.9
Sed0014792 Sechium edule HOM05D008002 ORTHO05D010148 1.9e-43 179.9 210 49.5
PGR142G3621 Punica granatum HOM05D008002 ORTHO05D010148 3.3e-43 179.1 213 51.6
COL.COLO4_03847 Corchorus olitorius HOM05D008002 ORTHO05D010148 5.6e-43 178.3 218 46.8
Haze_01969 Corylus avellana HOM05D008002 ORTHO05D010148 5.6e-43 178.3 180 53.9
CiPaw.06G114200 Carya illinoinensis HOM05D008002 ORTHO05D010148 8.9e-41 171.0 199 48.2
Thhalv10027398m.g Eutrema salsugineum HOM05D008002 ORTHO05D010148 5.8e-40 168.3 194 47.4
Oeu006116.1 Olea europaea HOM05D008002 ORTHO05D010148 1.1e-38 164.1 212 43.9
AT4G38213 Arabidopsis thaliana HOM05D008002 ORTHO05D010148 1.4e-38 163.7 196 49.0
Eucgr.H05000 Eucalyptus grandis HOM05D008002 ORTHO05D010148 1.4e-38 163.7 198 44.4
Lsat_1_v5_gn_3_48401 Lactuca sativa HOM05D008002 ORTHO05D010148 5.4e-38 161.8 153 54.2
Sp7g37530 Schrenkiella parvula HOM05D008002 ORTHO05D010148 1.6e-37 160.2 187 47.1
Ciclev10029829m.g Citrus clementina HOM05D008002 ORTHO05D010148 2.7e-37 159.5 196 47.4
Carub.0007s0013 Capsella rubella HOM05D008002 ORTHO05D010148 8.6e-36 154.5 192 43.8
PSO675G9248 Papaver somniferum HOM05D008002 ORTHO05D010148 1.5e-35 153.7 209 45.9
SEGI_35818 Sequoiadendron giganteum HOM05D008002 ORTHO05D010148 2.5e-35 152.9 193 45.1
CDE10G0514 Ceratophyllum demersum HOM05D008002 ORTHO05D010148 1.6e-34 150.2 175 49.7
ClCG02G003270 Citrullus lanatus HOM05D008002 ORTHO05D010148 1.6e-34 150.2 116 62.9
Zm00001eb035270 Zea mays HOM05D008002 ORTHO05D010148 2.1e-34 149.8 166 48.2
CSS0003373 Camellia sinensis var. sinensis HOM05D008002 ORTHO05D010148 1.4e-30 137.1 117 59.8
MBI17_g13390_MAGBIO Magnolia biondii HOM05D008002 ORTHO05D010148 5.4e-30 135.2 106 62.3
MBI01_g17256_MAGBIO Magnolia biondii HOM05D008002 ORTHO05D010148 1.7e-28 130.2 89 70.8
Os08g0512100 Oryza sativa ssp. japonica HOM05D008002 ORTHO05D010148 5.1e-28 128.6 179 41.3
AL7G10120 Arabidopsis lyrata HOM05D008002 ORTHO05D010148 1.1e-27 127.5 174 44.3
TAR628G1479 Trochodendron aralioides HOM05D008002 ORTHO05D010148 1.6e-26 123.6 97 62.9
HPP92_007470 Vanilla planifolia HOM05D008002 ORTHO05D010148 3.6e-26 122.5 162 42.0
HanXRQChr15g0490081 Helianthus annuus HOM05D008002 ORTHO05D010148 1.4e-25 120.6 116 50.9
MBI03_g24838_MAGBIO Magnolia biondii HOM05D008002 ORTHO05D010148 2.6e-24 116.3 96 60.4
MBI12_g13710_MAGBIO Magnolia biondii HOM05D002560 ORTHO05D022477 3.4e-24 115.9 97 58.8
CARHR293990 Cardamine hirsuta HOM05D008002 ORTHO05D010148 5.8e-24 115.2 166 41.0
HanXRQChr15g0479771 Helianthus annuus HOM05D008002 ORTHO05D010148 1.1e-22 110.9 115 50.4
MBI18_g48147_MAGBIO Magnolia biondii HOM05D002560 ORTHO05D022477 1.4e-22 110.5 97 57.7
ATR0763G180 Amborella trichopoda HOM05D008002 ORTHO05D010148 6.7e-20 101.7 112 51.8
CDE10G0941 Ceratophyllum demersum HOM05D008002 ORTHO05D010148 1.6e-18 97.1 95 55.8
Gohir.A13G064166 Gossypium hirsutum HOM05D008002 ORTHO05D010148 4.6e-13 79.0 82 52.4
CSS0029866 Camellia sinensis var. sinensis HOM05D008403 ORTHO05D010317 1.0e-07 61.2 73 43.8


User provided reference genes

Program Settings