Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn8g40376 Nelumbo nucifera HOM05D002403 ORTHO05D002724 4.0e-33 144.1 67 100.0
Nn1g06878 Nelumbo nucifera HOM05D002403 ORTHO05D002724 3.0e-12 74.7 39 87.2
GSVIVG01028360001 Vitis vinifera HOM05D002403 ORTHO05D002724 8.7e-12 73.2 39 84.6
Prupe.8G221200 Prunus persica HOM05D002403 ORTHO05D002724 1.5e-11 72.4 39 82.1
CSS0030452 Camellia sinensis var. sinensis HOM05D002403 ORTHO05D002724 1.9e-11 72.0 39 82.1
FvH4_2g21190 Fragaria vesca HOM05D002403 ORTHO05D002724 1.9e-11 72.0 39 82.1
FAN15G0458 Fragaria x ananassa HOM05D002403 ORTHO05D002724 1.9e-11 72.0 39 82.1
FAN24G0682 Fragaria x ananassa HOM05D002403 ORTHO05D002724 1.9e-11 72.0 39 82.1
Lj1C69G13 Lonicera japonica HOM05D002403 ORTHO05D002724 4.3e-11 70.9 39 79.5
MD05G1194500 Malus domestica HOM05D002403 ORTHO05D002724 4.3e-11 70.9 39 79.5
Ca_09669_v3 Cicer arietinum L. HOM05D002403 ORTHO05D002724 7.4e-11 70.1 39 79.5
Medtr1g069750 Medicago truncatula HOM05D002403 ORTHO05D002724 7.4e-11 70.1 39 79.5
Psat6g061360 Pisum sativum HOM05D002403 ORTHO05D002724 7.4e-11 70.1 39 79.5
FAN20G1305 Fragaria x ananassa HOM05D002403 ORTHO05D002724 9.6e-11 69.7 39 79.5
DCAR_018496 Daucus carota HOM05D002403 ORTHO05D002724 1.3e-10 69.3 39 76.9
TAR633G1685 Trochodendron aralioides HOM05D002403 ORTHO05D002724 1.6e-10 68.9 39 82.1
HPP92_022059 Vanilla planifolia HOM05D002403 ORTHO05D002724 1.6e-10 68.9 39 79.5
Hma1.2p1_0273F.1_g109530 Hydrangea macrophylla HOM05D002403 ORTHO05D002724 2.8e-10 68.2 39 79.5
TAR362G0736 Trochodendron aralioides HOM05D002403 ORTHO05D002724 2.8e-10 68.2 39 76.9
arahy.Tifrunner.gnm1.ann1.2ZBI42 Arachis hypogaea HOM05D002403 ORTHO05D002724 3.7e-10 67.8 39 82.1
arahy.Tifrunner.gnm1.ann1.TJ54L4 Arachis hypogaea HOM05D002403 ORTHO05D002724 3.7e-10 67.8 39 82.1
TPR.G35709 Trifolium pratense HOM05D002403 ORTHO05D002724 3.7e-10 67.8 39 82.1
Migut.D00441 Erythranthe guttata HOM05D002403 ORTHO05D002724 4.8e-10 67.4 39 79.5
RcHm_v2.0_Chr6g0287691 Rosa chinensis HOM05D002403 ORTHO05D002724 4.8e-10 67.4 39 79.5
vmacro14813 Vaccinium macrocarpon HOM05D002403 ORTHO05D002724 4.8e-10 67.4 39 79.5
Lj2A1148T50 Lonicera japonica HOM05D002403 ORTHO05D002724 6.2e-10 67.0 39 76.9
Rhsim01G0262300 Rhododendron simsii HOM05D002403 ORTHO05D002724 6.2e-10 67.0 39 76.9
AUR62038687 Chenopodium quinoa HOM05D002403 ORTHO05D002724 8.2e-10 66.6 39 79.5
Phvul.007G191500 Phaseolus vulgaris HOM05D002403 ORTHO05D002724 8.2e-10 66.6 39 79.5
VMungo0720G2686 Vigna mungo HOM05D002403 ORTHO05D002724 8.2e-10 66.6 39 79.5
Solyc09g066470.4 Solanum lycopersicum HOM05D002403 ORTHO05D002724 1.1e-09 66.2 39 76.9
Sopen09g028200 Solanum pennellii HOM05D002403 ORTHO05D002724 1.1e-09 66.2 39 76.9
Actinidia25802 Actinidia chinensis HOM05D002403 ORTHO05D002724 1.4e-09 65.9 39 79.5
Nitab4.5_0007062g0020 Nicotiana tabacum HOM05D002403 ORTHO05D002724 1.4e-09 65.9 39 76.9
Nitab4.5_0020128g0010 Nicotiana tabacum HOM05D002403 ORTHO05D002724 1.4e-09 65.9 39 76.9
Peaxi162Scf00624g00033 Petunia axillaris HOM05D002403 ORTHO05D002724 1.4e-09 65.9 39 76.9
PGSC0003DMG400010314 Solanum tuberosum HOM05D002403 ORTHO05D002724 1.4e-09 65.9 39 76.9
AUR62018199 Chenopodium quinoa HOM05D002403 ORTHO05D002724 1.8e-09 65.5 39 76.9
Zm00001eb191710 Zea mays HOM05D002403 ORTHO05D002724 1.8e-09 65.5 39 79.5
SalBow4G3143 Salvia bowleyana HOM05D002403 ORTHO05D002724 2.4e-09 65.1 38 78.9
Sed0003162 Sechium edule HOM05D002403 ORTHO05D002724 2.4e-09 65.1 38 78.9
Dinv34640 Davidia involucrata HOM05D002403 ORTHO05D002724 3.1e-09 64.7 39 76.9
Glyma.13G124700 Glycine max HOM05D002403 ORTHO05D002724 3.1e-09 64.7 39 76.9
Lj5g0004195 Lotus japonicus HOM05D002403 ORTHO05D002724 3.1e-09 64.7 39 79.5
Os02g0810300 Oryza sativa ssp. japonica HOM05D002403 ORTHO05D002724 3.1e-09 64.7 39 79.5
Thecc.01G255600 Theobroma cacao HOM05D002403 ORTHO05D002724 3.1e-09 64.7 39 79.5
Thecc.10G138500 Theobroma cacao HOM05D002403 ORTHO05D002724 3.1e-09 64.7 39 79.5
Ah.12g062690 Amaranthus hybridus HOM05D002403 ORTHO05D002724 4.0e-09 64.3 38 76.3
Cc01_g18170 Coffea canephora HOM05D002403 ORTHO05D002724 4.0e-09 64.3 39 76.9
COL.COLO4_04020 Corchorus olitorius HOM05D002403 ORTHO05D002724 4.0e-09 64.3 39 79.5
ECA236G4625 Erigeron canadensis HOM05D002403 ORTHO05D002724 4.0e-09 64.3 39 74.4
Gohir.A07G213820 Gossypium hirsutum HOM05D002403 ORTHO05D002724 4.0e-09 64.3 39 79.5
HanXRQChr06g0172431 Helianthus annuus HOM05D002403 ORTHO05D002724 4.0e-09 64.3 39 74.4
TWI12G1304 Tripterygium wilfordii HOM05D002403 ORTHO05D002724 4.0e-09 64.3 39 79.5
EL10Ac2g03149 Beta vulgaris HOM05D002403 ORTHO05D002724 5.3e-09 63.9 39 76.9
CiPaw.03G266500 Carya illinoinensis HOM05D002403 ORTHO05D002724 5.3e-09 63.9 39 76.9
Lalb_Chr02g0152581 Lupinus albus HOM05D002403 ORTHO05D002724 5.3e-09 63.9 38 78.9
Manes.12G033800 Manihot esculenta HOM05D002403 ORTHO05D002724 5.3e-09 63.9 39 76.9
Aqoxy5G00207 Aquilegia oxysepala HOM05D002403 ORTHO05D002724 6.9e-09 63.5 39 76.9
Gorai.001G254500 Gossypium raimondii HOM05D002403 ORTHO05D002724 6.9e-09 63.5 57 61.4
MBI07_g16901_MAGBIO Magnolia biondii HOM05D002403 ORTHO05D002724 6.9e-09 63.5 39 76.9
Potri.005G226600 Populus trichocarpa HOM05D002403 ORTHO05D002724 6.9e-09 63.5 39 74.4
QL09p039674 Quercus lobata HOM05D002403 ORTHO05D002724 6.9e-09 63.5 39 76.9
Ciclev10021439m.g Citrus clementina HOM05D002403 ORTHO05D002724 9.0e-09 63.2 39 74.4
Duzib138G1702 Durio zibethinus HOM05D002403 ORTHO05D002724 9.0e-09 63.2 39 76.9
CDE04G0386 Ceratophyllum demersum HOM05D002403 ORTHO05D002724 1.2e-08 62.8 39 76.9
Gohir.D07G220200 Gossypium hirsutum HOM05D002403 ORTHO05D002724 1.2e-08 62.8 39 76.9
PSO210G5663 Papaver somniferum HOM05D002403 ORTHO05D002724 1.5e-08 62.4 39 74.4
PSO210G6376 Papaver somniferum HOM05D002403 ORTHO05D002724 1.5e-08 62.4 39 74.4
Potri.002G036300 Populus trichocarpa HOM05D002403 ORTHO05D002724 1.5e-08 62.4 39 71.8
Sabra02G0029500 Salix brachista HOM05D002403 ORTHO05D002724 1.5e-08 62.4 39 71.8
SGA_v2.0_scaffold1G00625 Striga asiatica HOM05D002403 ORTHO05D002724 1.5e-08 62.4 39 74.4
MSTRG.17499 Avicennia marina HOM05D002403 ORTHO05D002724 2.0e-08 62.0 39 69.2
CANSAT01G3046 Cannabis sativa HOM05D002403 ORTHO05D002724 2.0e-08 62.0 39 71.8
CAN.G1070.10 Capsicum annuum HOM05D002403 ORTHO05D002724 2.0e-08 62.0 39 71.8
ClCG09G008310 Citrullus lanatus HOM05D002403 ORTHO05D002724 2.0e-08 62.0 38 76.3
Haze_24652 Corylus avellana HOM05D002403 ORTHO05D002724 2.0e-08 62.0 39 74.4
Sc15g0006950 Simmondsia chinensis HOM05D002403 ORTHO05D002724 2.6e-08 61.6 38 73.7
Atru.chr5.1732 Acer truncatum HOM05D002403 ORTHO05D002724 4.5e-08 60.8 39 71.8
Cpa.g.sc165.17 Carica papaya HOM05D002403 ORTHO05D002724 5.8e-08 60.5 39 69.2
MELO3C021130.2 Cucumis melo HOM05D002403 ORTHO05D002724 5.8e-08 60.5 38 73.7
Lsat_1_v5_gn_8_92521 Lactuca sativa HOM05D002403 ORTHO05D002724 5.8e-08 60.5 39 71.8
Sp2g08935 Schrenkiella parvula HOM05D002403 ORTHO05D002724 5.8e-08 60.5 39 69.2
unitig_578.g16426 Utricularia gibba HOM05D001001 ORTHO05D000808 7.6e-08 60.1 39 74.4
ATR0736G131 Amborella trichopoda HOM05D002403 ORTHO05D002724 1.0e-07 59.7 39 69.2
CsaV3_7G026750 Cucumis sativus L. HOM05D002403 ORTHO05D002724 1.0e-07 59.7 38 73.7
THA.LOC104801149 Tarenaya hassleriana HOM05D002403 ORTHO05D002724 1.3e-07 59.3 39 69.2
Eucgr.A00692 Eucalyptus grandis HOM05D002403 ORTHO05D002724 1.7e-07 58.9 39 69.2
PGR031G2560 Punica granatum HOM05D002403 ORTHO05D002724 1.7e-07 58.9 39 69.2
Mapoly0067s0085 Marchantia polymorpha HOM05D002403 ORTHO05D002724 2.2e-07 58.5 39 69.2
Aa31LG5G3160 Aethionema arabicum HOM05D002403 ORTHO05D002724 2.9e-07 58.2 39 69.2
C08p00830 Brassica napus HOM05D002403 ORTHO05D002724 2.9e-07 58.2 39 69.2
Thhalv10003252m.g Eutrema salsugineum HOM05D002403 ORTHO05D002724 2.9e-07 58.2 39 69.2
Aa31LG1G9090 Aethionema arabicum HOM05D002403 ORTHO05D002724 3.8e-07 57.8 39 66.7
AL1G13490 Arabidopsis lyrata HOM05D002403 ORTHO05D002724 3.8e-07 57.8 39 66.7
AT1G03905 Arabidopsis thaliana HOM05D002403 ORTHO05D002724 3.8e-07 57.8 39 66.7
A08p37160 Brassica napus HOM05D002403 ORTHO05D002724 3.8e-07 57.8 39 66.7
BolC8t46882H Brassica oleracea HOM05D002403 ORTHO05D002724 3.8e-07 57.8 39 66.7
BraA08t35615Z Brassica rapa HOM05D002403 ORTHO05D002724 3.8e-07 57.8 39 66.7
Carub.0001s0305 Capsella rubella HOM05D002403 ORTHO05D002724 3.8e-07 57.8 39 66.7
CARHR179160 Cardamine hirsuta HOM05D002403 ORTHO05D002724 3.8e-07 57.8 39 69.2
Thhalv10008378m.g Eutrema salsugineum HOM05D002403 ORTHO05D002724 3.8e-07 57.8 39 66.7
BcaB07g30970 Brassica carinata HOM05D002403 ORTHO05D002724 4.9e-07 57.4 39 66.7
BcaC04g21864 Brassica carinata HOM05D002403 ORTHO05D002724 4.9e-07 57.4 39 66.7
A09p20880 Brassica napus HOM05D002403 ORTHO05D002724 4.9e-07 57.4 39 66.7
C09p26410 Brassica napus HOM05D002403 ORTHO05D002724 4.9e-07 57.4 39 66.7
BolC9t55543H Brassica oleracea HOM05D002403 ORTHO05D002724 4.9e-07 57.4 39 66.7
BraA09t37689Z Brassica rapa HOM05D002403 ORTHO05D002724 4.9e-07 57.4 39 66.7
CARHR003230 Cardamine hirsuta HOM05D002403 ORTHO05D002724 4.9e-07 57.4 39 64.1
Sp1g02760 Schrenkiella parvula HOM05D002403 ORTHO05D002724 4.9e-07 57.4 39 66.7
Actinidia09535 Actinidia chinensis HOM05D002403 ORTHO05D002724 8.4e-07 56.6 35 74.3
AL8G15930 Arabidopsis lyrata HOM05D002403 ORTHO05D002724 1.1e-06 56.2 39 66.7
AT5G44110 Arabidopsis thaliana HOM05D002403 ORTHO05D002724 1.1e-06 56.2 39 66.7
Carub.0008s0442 Capsella rubella HOM05D002403 ORTHO05D002724 1.4e-06 55.8 39 66.7
CBR_g30515 Chara braunii HOM05D002403 ORTHO05D002724 7.1e-06 53.5 39 64.1


User provided reference genes

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