Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn8g40276 Nelumbo nucifera HOM05D004487 ORTHO05D005483 4.7e-132 474.6 241 100.0
Nn2g14563 Nelumbo nucifera HOM05D004487 ORTHO05D005483 4.0e-115 418.3 241 89.6
TAR625G1215 Trochodendron aralioides HOM05D004487 ORTHO05D005483 1.9e-88 329.7 242 71.1
GSVIVG01022203001 Vitis vinifera HOM05D004487 ORTHO05D005483 7.8e-79 297.7 242 65.3
QL06p033465 Quercus lobata HOM05D004487 ORTHO05D005483 1.1e-75 287.3 239 62.8
Haze_05964 Corylus avellana HOM05D004487 ORTHO05D005483 6.4e-73 278.1 268 57.1
Nitab4.5_0007717g0020 Nicotiana tabacum HOM05D004487 ORTHO05D005483 6.4e-73 278.1 238 62.6
vmacro18624 Vaccinium macrocarpon HOM05D004487 ORTHO05D005483 6.4e-73 278.1 239 63.2
Nitab4.5_0001495g0020 Nicotiana tabacum HOM05D004487 ORTHO05D005483 1.9e-72 276.6 238 62.6
Atru.chr3.204 Acer truncatum HOM05D004487 ORTHO05D005483 4.2e-72 275.4 204 68.6
Rhsim05G0180000 Rhododendron simsii HOM05D004487 ORTHO05D005483 9.3e-72 274.2 234 60.3
Ciclev10026392m.g Citrus clementina HOM05D004487 ORTHO05D005483 1.7e-70 270.0 239 60.3
vmacro21317 Vaccinium macrocarpon HOM05D004487 ORTHO05D005483 1.7e-70 270.0 230 62.2
CsaV3_6G045820 Cucumis sativus L. HOM05D004487 ORTHO05D005483 3.0e-70 269.2 241 60.2
CiPaw.04G093900 Carya illinoinensis HOM05D004487 ORTHO05D005483 3.9e-70 268.9 243 60.5
CsaV3_5G036000 Cucumis sativus L. HOM05D004487 ORTHO05D005483 6.6e-70 268.1 246 58.9
MELO3C007790.2 Cucumis melo HOM05D004487 ORTHO05D005483 1.1e-69 267.3 241 59.8
CSS0025780 Camellia sinensis var. sinensis HOM05D004487 ORTHO05D005483 5.6e-69 265.0 244 59.8
Peaxi162Scf00171g00006 Petunia axillaris HOM05D004487 ORTHO05D005483 5.6e-69 265.0 247 57.1
CAN.G861.28 Capsicum annuum HOM05D004487 ORTHO05D005483 1.3e-68 263.8 229 59.0
Duzib147G1438 Durio zibethinus HOM05D004487 ORTHO05D005483 1.3e-68 263.8 203 65.5
Prupe.8G078400 Prunus persica HOM05D004487 ORTHO05D005483 1.6e-68 263.5 213 64.8
Sopen03g029710 Solanum pennellii HOM05D004487 ORTHO05D005483 2.1e-68 263.1 237 60.8
Thecc.01G110300 Theobroma cacao HOM05D004487 ORTHO05D005483 2.8e-68 262.7 203 64.5
MD01G1016500 Malus domestica HOM05D004487 ORTHO05D005483 4.8e-68 261.9 242 58.7
Solyc03g019910.3 Solanum lycopersicum HOM05D004487 ORTHO05D005483 8.1e-68 261.2 214 64.0
CANSAT01G2370 Cannabis sativa HOM05D004487 ORTHO05D005483 1.1e-67 260.8 251 59.4
PGSC0003DMG400015213 Solanum tuberosum HOM05D004487 ORTHO05D005483 1.4e-67 260.4 237 60.8
ClCG01G019130 Citrullus lanatus HOM05D004487 ORTHO05D005483 3.1e-67 259.2 236 58.9
MBI04_g31212_MAGBIO Magnolia biondii HOM05D004487 ORTHO05D005483 3.1e-67 259.2 226 61.5
MSTRG.14740 Avicennia marina HOM05D004487 ORTHO05D005483 4.0e-67 258.8 241 56.4
MD15G1334800 Malus domestica HOM05D004487 ORTHO05D005483 6.9e-67 258.1 242 56.2
PGR004G1100 Punica granatum HOM05D004487 ORTHO05D005483 1.5e-66 256.9 241 57.3
COL.COLO4_11036 Corchorus olitorius HOM05D004487 ORTHO05D005483 7.6e-66 254.6 203 62.1
Oeu040918.3 Olea europaea HOM05D004487 ORTHO05D005483 7.6e-66 254.6 292 49.7
Gohir.A11G053300 Gossypium hirsutum HOM05D004487 ORTHO05D005483 1.3e-65 253.8 242 55.4
Gorai.007G062000 Gossypium raimondii HOM05D004487 ORTHO05D005483 2.9e-65 252.7 248 54.8
Gohir.D11G056800 Gossypium hirsutum HOM05D004487 ORTHO05D005483 4.9e-65 251.9 242 55.4
Lalb_Chr11g0075201 Lupinus albus HOM05D004487 ORTHO05D005483 1.4e-64 250.4 236 56.8
Manes.12G140400 Manihot esculenta HOM05D004487 ORTHO05D005483 1.9e-64 250.0 243 58.4
Prupe.6G176600 Prunus persica HOM05D004487 ORTHO05D005483 4.2e-64 248.8 242 57.4
FvH4_1g21950 Fragaria vesca HOM05D004487 ORTHO05D005483 9.3e-64 247.7 215 60.0
DCAR_014253 Daucus carota HOM05D004487 ORTHO05D005483 1.2e-63 247.3 234 54.7
TAR626G1474 Trochodendron aralioides HOM05D004487 ORTHO05D005483 1.2e-63 247.3 242 58.3
RcHm_v2.0_Chr2g0115971 Rosa chinensis HOM05D004487 ORTHO05D005483 2.1e-63 246.5 215 60.0
MELO3C012399.2 Cucumis melo HOM05D004487 ORTHO05D005483 3.5e-63 245.7 262 53.4
TWI74G0090 Tripterygium wilfordii HOM05D004487 ORTHO05D005483 4.6e-63 245.4 243 53.5
AUR62005250 Chenopodium quinoa HOM05D004487 ORTHO05D005483 3.0e-62 242.7 206 58.3
Migut.H01422 Erythranthe guttata HOM05D004487 ORTHO05D005483 2.5e-61 239.6 241 53.1
FvH4_1g25670 Fragaria vesca HOM05D004487 ORTHO05D005483 2.5e-61 239.6 235 55.3
Cc02_g15410 Coffea canephora HOM05D004487 ORTHO05D005483 4.3e-61 238.8 241 53.9
FAN28G1272 Fragaria x ananassa HOM05D004487 ORTHO05D005483 7.4e-61 238.0 209 58.9
FAN28G1914 Fragaria x ananassa HOM05D004487 ORTHO05D005483 7.4e-61 238.0 209 58.9
FAN19G1427 Fragaria x ananassa HOM05D004487 ORTHO05D005483 9.6e-61 237.7 210 58.1
FAN23G0375 Fragaria x ananassa HOM05D004487 ORTHO05D005483 9.6e-61 237.7 210 58.1
Lj3g0008934 Lotus japonicus HOM05D004487 ORTHO05D005483 9.6e-61 237.7 219 56.2
EL10Ac4g09863 Beta vulgaris HOM05D004487 ORTHO05D005483 1.3e-60 237.3 234 52.6
Potri.007G085100 Populus trichocarpa HOM05D004487 ORTHO05D005483 2.1e-60 236.5 243 57.2
AUR62000713 Chenopodium quinoa HOM05D004487 ORTHO05D005483 2.8e-60 236.1 206 57.8
Eucgr.I00528 Eucalyptus grandis HOM05D004487 ORTHO05D005483 2.8e-60 236.1 243 53.5
Nitab4.5_0000477g0120 Nicotiana tabacum HOM05D004487 ORTHO05D005483 2.8e-60 236.1 244 54.9
FAN26G2580 Fragaria x ananassa HOM05D004487 ORTHO05D005483 6.2e-60 235.0 236 54.2
Lsat_1_v5_gn_2_120680 Lactuca sativa HOM05D004487 ORTHO05D005483 3.1e-59 232.6 255 51.0
Ca_23004_v3 Cicer arietinum L. HOM05D004487 ORTHO05D005483 4.0e-59 232.3 246 53.3
HanXRQChr14g0458831 Helianthus annuus HOM05D004487 ORTHO05D005483 4.0e-59 232.3 234 52.1
FAN19G3081 Fragaria x ananassa HOM05D004487 ORTHO05D005483 1.2e-58 230.7 229 54.1
ECA238G1615 Erigeron canadensis HOM05D004487 ORTHO05D005483 1.5e-58 230.3 201 57.7
ClCG05G021300 Citrullus lanatus HOM05D004487 ORTHO05D005483 7.6e-58 228.0 241 52.7
arahy.Tifrunner.gnm1.ann1.0Q3DRY Arachis hypogaea HOM05D004487 ORTHO05D005483 9.9e-58 227.6 219 53.9
arahy.Tifrunner.gnm1.ann1.NRP8RH Arachis hypogaea HOM05D004487 ORTHO05D005483 1.3e-57 227.3 203 57.1
Aa31LG6G15640 Aethionema arabicum HOM05D004487 ORTHO05D005483 1.7e-57 226.9 239 54.0
Gohir.1Z049552 Gossypium hirsutum HOM05D004487 ORTHO05D005483 2.9e-57 226.1 182 60.4
Hma1.2p1_0486F.1_g163280 Hydrangea macrophylla HOM05D004487 ORTHO05D005483 4.9e-57 225.3 215 54.9
Sabra07G0070400 Salix brachista HOM05D004487 ORTHO05D005483 8.4e-57 224.6 243 55.6
arahy.Tifrunner.gnm1.ann1.Z7G166 Arachis hypogaea HOM05D004487 ORTHO05D005483 1.9e-56 223.4 202 56.4
TPR.G33715 Trifolium pratense HOM05D004487 ORTHO05D005483 7.1e-56 221.5 246 51.2
arahy.Tifrunner.gnm1.ann1.10QJ8K Arachis hypogaea HOM05D004487 ORTHO05D005483 1.2e-55 220.7 201 56.2
Ca_25628_v3 Cicer arietinum L. HOM05D004487 ORTHO05D005483 2.1e-55 219.9 215 53.5
Ah.04g161200 Amaranthus hybridus HOM05D004487 ORTHO05D005483 2.7e-55 219.5 237 49.4
Glyma.15G199500 Glycine max HOM05D004487 ORTHO05D005483 1.0e-54 217.6 236 50.0
Phvul.009G211400 Phaseolus vulgaris HOM05D004487 ORTHO05D005483 2.3e-54 216.5 200 56.5
Sc16g0008840 Simmondsia chinensis HOM05D004487 ORTHO05D005483 1.1e-53 214.2 235 50.2
Aqoxy2G03854 Aquilegia oxysepala HOM05D004487 ORTHO05D005483 1.9e-53 213.4 219 58.4
Lj2A942G27 Lonicera japonica HOM05D004487 ORTHO05D005483 5.6e-53 211.8 284 50.0
Glyma.09G092600 Glycine max HOM05D004487 ORTHO05D005483 7.4e-53 211.5 243 51.4
unitig_22.g6757 Utricularia gibba HOM05D004487 ORTHO05D005483 7.4e-53 211.5 196 55.6
arahy.Tifrunner.gnm1.ann1.7417N6 Arachis hypogaea HOM05D004487 ORTHO05D005483 9.6e-53 211.1 203 53.7
arahy.Tifrunner.gnm1.ann1.S1NDRU Arachis hypogaea HOM05D004487 ORTHO05D005483 1.3e-52 210.7 203 54.2
Actinidia08329 Actinidia chinensis HOM05D004487 ORTHO05D005483 2.8e-52 209.5 154 68.8
SGA_v2.0_scaffold106G30591 Striga asiatica HOM05D004487 ORTHO05D005483 2.4e-51 206.5 234 52.6
arahy.Tifrunner.gnm1.ann1.32WU9K Arachis hypogaea HOM05D004487 ORTHO05D005483 5.3e-51 205.3 206 52.9
Nitab4.5_0007222g0010 Nicotiana tabacum HOM05D004487 ORTHO05D005483 5.8e-50 201.8 244 50.4
AL7G11780 Arabidopsis lyrata HOM05D004487 ORTHO05D005483 1.7e-49 200.3 232 49.6
Potri.005G082500 Populus trichocarpa HOM05D004487 ORTHO05D005483 3.8e-49 199.1 240 50.8
Carub.0007s0150 Capsella rubella HOM05D004487 ORTHO05D005483 8.4e-49 198.0 199 53.8
Psat2g176760 Pisum sativum HOM05D004487 ORTHO05D005483 1.4e-48 197.2 242 47.1
Sp7g04740 Schrenkiella parvula HOM05D004487 ORTHO05D005483 3.2e-48 196.1 194 54.1
Thhalv10027902m.g Eutrema salsugineum HOM05D004487 ORTHO05D005483 4.2e-48 195.7 239 46.9
arahy.Tifrunner.gnm1.ann1.Y72RXW Arachis hypogaea HOM05D004487 ORTHO05D005483 5.5e-48 195.3 203 51.7
Dinv13358 Davidia involucrata HOM05D004487 ORTHO05D005483 2.7e-47 193.0 174 58.6
Lj2A929T16 Lonicera japonica HOM05D004487 ORTHO05D005483 1.3e-46 190.7 244 50.4
Dinv05687 Davidia involucrata HOM05D004487 ORTHO05D005483 3.3e-45 186.0 172 57.6
VMungo1309G0247 Vigna mungo HOM05D004487 ORTHO05D005483 3.3e-45 186.0 244 45.1
arahy.Tifrunner.gnm1.ann1.9RVJ5A Arachis hypogaea HOM05D004487 ORTHO05D005483 5.7e-45 185.3 230 45.2
CARHR215520 Cardamine hirsuta HOM05D004487 ORTHO05D005483 9.6e-45 184.5 199 50.3
C04p44290 Brassica napus HOM05D004487 ORTHO05D005483 1.1e-43 181.0 200 50.5
ATR0210G008 Amborella trichopoda HOM05D004487 ORTHO05D005483 5.3e-43 178.7 242 44.6
Os08g0290400 Oryza sativa ssp. japonica HOM05D004487 ORTHO05D005483 4.5e-42 175.6 203 47.8
BcaB06g27071 Brassica carinata HOM05D004487 ORTHO05D005483 5.9e-42 175.3 201 49.8
BcaC02g09572 Brassica carinata HOM05D004487 ORTHO05D005483 7.6e-42 174.9 202 49.5
AT4G39630 Arabidopsis thaliana HOM05D004487 ORTHO05D005483 1.7e-41 173.7 232 44.0
THA.LOC104807718 Tarenaya hassleriana HOM05D004487 ORTHO05D005483 1.7e-41 173.7 240 45.4
A04p10610 Brassica napus HOM05D004487 ORTHO05D005483 8.5e-41 171.4 234 45.3
BolC4t26003H Brassica oleracea HOM05D004487 ORTHO05D005483 8.5e-41 171.4 212 47.2
BraA04t16724Z Brassica rapa HOM05D004487 ORTHO05D005483 4.2e-40 169.1 211 46.4
Actinidia33369 Actinidia chinensis HOM05D004487 ORTHO05D005483 5.5e-40 168.7 171 56.1
arahy.Tifrunner.gnm1.ann1.L7ETT7 Arachis hypogaea HOM05D004487 ORTHO05D005483 9.3e-40 167.9 173 49.7
Lj4A903G12 Lonicera japonica HOM05D004487 ORTHO05D005483 9.3e-40 167.9 188 54.8
arahy.Tifrunner.gnm1.ann1.I45DC0 Arachis hypogaea HOM05D004487 ORTHO05D005483 2.7e-39 166.4 217 44.2
HPP92_005242 Vanilla planifolia HOM05D004487 ORTHO05D005483 1.8e-38 163.7 202 47.0
CDE04G3174 Ceratophyllum demersum HOM05D004487 ORTHO05D005483 3.0e-38 162.9 197 47.2
HanXRQChr07g0202331 Helianthus annuus HOM05D004487 ORTHO05D005483 6.7e-38 161.8 168 49.4
Hma1.2p1_0375F.1_g138570 Hydrangea macrophylla HOM05D004487 ORTHO05D005483 8.7e-38 161.4 121 63.6
SHI54251 Sapria himalayana HOM05D004487 ORTHO05D005483 1.5e-37 160.6 243 44.4
TPR.G36682 Trifolium pratense HOM05D005330 ORTHO05D006489 1.5e-37 160.6 238 42.0
Sabra05G0067500 Salix brachista HOM05D004487 ORTHO05D005483 7.4e-37 158.3 198 48.5
CARHR247100 Cardamine hirsuta HOM05D004487 ORTHO05D005483 1.6e-36 157.1 194 49.0
SEGI_02201 Sequoiadendron giganteum HOM05D004487 ORTHO05D005483 2.4e-35 153.3 213 41.8
Sed0026038 Sechium edule HOM05D004487 ORTHO05D005483 9.0e-35 151.4 145 55.2
Zm00001eb192330 Zea mays HOM05D004487 ORTHO05D005483 3.4e-34 149.4 200 44.5
Lj6g0018564 Lotus japonicus HOM05D004487 ORTHO05D005483 2.2e-33 146.7 109 65.1
CSS0002847 Camellia sinensis var. sinensis HOM05D004487 ORTHO05D005483 1.0e-30 137.9 101 72.3
arahy.Tifrunner.gnm1.ann1.ZIF87W Arachis hypogaea HOM05D004487 ORTHO05D005483 1.4e-30 137.5 186 42.5
Sp7g36260 Schrenkiella parvula HOM05D004487 ORTHO05D005483 6.7e-30 135.2 198 44.4
arahy.Tifrunner.gnm1.ann1.4M30AQ Arachis hypogaea HOM05D004487 ORTHO05D005483 2.6e-29 133.3 172 45.3
CDE04G3300 Ceratophyllum demersum HOM05D004487 ORTHO05D005483 1.5e-26 124.0 213 37.6
TWI53G0384 Tripterygium wilfordii HOM05D004487 ORTHO05D005483 4.5e-26 122.5 241 36.1
CDE06G2627 Ceratophyllum demersum HOM05D004487 ORTHO05D005483 1.7e-25 120.6 196 38.8
FAN26G0673 Fragaria x ananassa HOM05D004487 ORTHO05D005483 1.1e-24 117.9 145 46.9
Psat4g139880 Pisum sativum HOM05D004487 ORTHO05D005483 7.4e-21 105.1 159 40.9
Psat4g139920 Pisum sativum HOM05D004487 ORTHO05D005483 3.7e-20 102.8 159 40.3
ATR0730G218 Amborella trichopoda HOM05D004487 ORTHO05D005483 1.9e-16 90.5 147 38.8
arahy.Tifrunner.gnm1.ann1.PFH739 Arachis hypogaea HOM05D004487 ORTHO05D005483 1.9e-16 90.5 93 46.2
arahy.Tifrunner.gnm1.ann1.3C43J1 Arachis hypogaea HOM05D004487 ORTHO05D005483 5.5e-16 89.0 88 51.1
arahy.Tifrunner.gnm1.ann1.02EUR6 Arachis hypogaea HOM05D004487 ORTHO05D005483 1.2e-15 87.8 132 37.9
arahy.Tifrunner.gnm1.ann1.PL6VNF Arachis hypogaea HOM05D004487 ORTHO05D005483 2.7e-15 86.7 93 45.2
Oeu043116.1 Olea europaea HOM05D004487 ORTHO05D005483 4.7e-15 85.9 158 34.2
arahy.Tifrunner.gnm1.ann1.RJV3W7 Arachis hypogaea HOM05D004487 ORTHO05D005483 6.1e-15 85.5 88 48.9
Lalb_Chr12g0203581 Lupinus albus HOM05D004487 ORTHO05D005483 8.0e-15 85.1 233 31.3
arahy.Tifrunner.gnm1.ann1.94164M Arachis hypogaea HOM05D004487 ORTHO05D005483 1.4e-11 74.3 65 55.4
arahy.Tifrunner.gnm1.ann1.FJ4QJG Arachis hypogaea HOM05D004487 ORTHO05D005483 2.4e-11 73.6 65 55.4
BcaNung00884 Brassica carinata HOM05D004487 ORTHO05D032747 5.3e-11 72.4 70 55.7
SGA_v2.0_scaffold83G26423 Striga asiatica HOM05D004487 ORTHO05D005483 5.3e-11 72.4 92 44.6
CSS0015836 Camellia sinensis var. sinensis HOM05D004487 ORTHO05D005483 1.2e-10 71.2 39 89.7
CSS0022213 Camellia sinensis var. sinensis HOM05D004487 ORTHO05D005483 1.2e-10 71.2 39 89.7
arahy.Tifrunner.gnm1.ann1.E9WDF1 Arachis hypogaea HOM05D004487 ORTHO05D005483 7.2e-08 62.0 96 41.7
AagrBONN_evm.TU.Sc2ySwM_368.3272 Anthoceros agrestis HOM05D019097 ORTHO05D019635 2.7e-07 60.1 228 26.3
Mapoly0076s0033 Marchantia polymorpha HOM05D019097 ORTHO05D019635 4.7e-07 59.3 222 26.6
AagrBONN_evm.TU.Sc2ySwM_368.3295 Anthoceros agrestis HOM05D019097 ORTHO05D019635 1.8e-06 57.4 232 24.6
arahy.Tifrunner.gnm1.ann1.X4R883 Arachis hypogaea HOM05D004487 ORTHO05D005483 5.2e-06 55.8 51 47.1


User provided reference genes

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