Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn8g40262 Nelumbo nucifera HOM05D005355 ORTHO05D006591 1.2e-43 179.5 95 100.0
Nn5g28219 Nelumbo nucifera HOM05D005355 ORTHO05D006591 6.7e-34 147.1 76 100.0
Duzib116G0422 Durio zibethinus HOM05D005355 ORTHO05D006591 2.1e-19 99.0 60 80.0
Thecc.08G123400 Theobroma cacao HOM05D005355 ORTHO05D006591 2.7e-19 98.6 60 80.0
Gohir.A05G234400 Gossypium hirsutum HOM05D005355 ORTHO05D006591 4.7e-19 97.8 71 71.8
PSO170G1761 Papaver somniferum HOM05D005355 ORTHO05D006591 1.8e-18 95.9 78 62.8
PSO528G0270 Papaver somniferum HOM05D005355 ORTHO05D006591 1.8e-18 95.9 78 62.8
Gohir.D05G236700 Gossypium hirsutum HOM05D005355 ORTHO05D006591 2.3e-18 95.5 78 66.7
Gorai.009G245100 Gossypium raimondii HOM05D005355 ORTHO05D006591 2.3e-18 95.5 78 66.7
COL.COLO4_35946 Corchorus olitorius HOM05D005355 ORTHO05D006591 4.0e-18 94.7 73 65.8
Manes.18G076200 Manihot esculenta HOM05D005355 ORTHO05D006591 6.8e-18 94.0 77 66.2
Potri.005G176400 Populus trichocarpa HOM05D005355 ORTHO05D006591 6.8e-18 94.0 74 68.9
Sabra05G0133000 Salix brachista HOM05D005355 ORTHO05D006591 6.8e-18 94.0 85 62.4
Gohir.A06G043600 Gossypium hirsutum HOM05D005355 ORTHO05D006591 1.2e-17 93.2 77 67.5
Gohir.D06G044400 Gossypium hirsutum HOM05D005355 ORTHO05D006591 1.2e-17 93.2 77 67.5
Gorai.010G049600 Gossypium raimondii HOM05D005355 ORTHO05D006591 1.2e-17 93.2 77 67.5
TPR.G24014 Trifolium pratense HOM05D005355 ORTHO05D006591 1.2e-17 93.2 68 64.7
GSVIVG01008886001 Vitis vinifera HOM05D005355 ORTHO05D006591 1.5e-17 92.8 76 64.5
Glyma.04G250500 Glycine max HOM05D005355 ORTHO05D006591 2.6e-17 92.0 69 66.7
Ca_15194_v3 Cicer arietinum L. HOM05D005355 ORTHO05D006591 3.4e-17 91.7 67 67.2
Duzib093G2154 Durio zibethinus HOM05D005355 ORTHO05D006591 3.4e-17 91.7 79 63.3
TAR625G0673 Trochodendron aralioides HOM05D005355 ORTHO05D006591 4.4e-17 91.3 76 68.4
Psat5g132440 Pisum sativum HOM05D005355 ORTHO05D006591 5.7e-17 90.9 68 66.2
Lj1g0013612 Lotus japonicus HOM05D005355 ORTHO05D006591 7.5e-17 90.5 75 62.7
CSS0006134 Camellia sinensis var. sinensis HOM05D005355 ORTHO05D006591 9.8e-17 90.1 84 61.9
CSS0023513 Camellia sinensis var. sinensis HOM05D005355 ORTHO05D006591 9.8e-17 90.1 84 61.9
Potri.002G085000 Populus trichocarpa HOM05D005355 ORTHO05D006591 9.8e-17 90.1 76 61.8
ClCG08G005570 Citrullus lanatus HOM05D005355 ORTHO05D006591 1.3e-16 89.7 78 61.5
Sabra02G0066400 Salix brachista HOM05D005355 ORTHO05D006591 1.3e-16 89.7 76 61.8
Phvul.009G124200 Phaseolus vulgaris HOM05D005355 ORTHO05D006591 2.2e-16 89.0 68 67.6
Prupe.1G500200 Prunus persica HOM05D005355 ORTHO05D006591 2.8e-16 88.6 76 61.8
CiPaw.05G223300 Carya illinoinensis HOM05D005355 ORTHO05D006591 3.7e-16 88.2 75 61.3
Ciclev10000938m.g Citrus clementina HOM05D005355 ORTHO05D006591 3.7e-16 88.2 76 64.5
Lalb_Chr08g0241491 Lupinus albus HOM05D005355 ORTHO05D006591 4.8e-16 87.8 75 62.7
QL09p035410 Quercus lobata HOM05D005355 ORTHO05D006591 4.8e-16 87.8 75 62.7
Eucgr.F04357 Eucalyptus grandis HOM05D005355 ORTHO05D006591 6.3e-16 87.4 60 68.3
arahy.Tifrunner.gnm1.ann1.Y2U2DK Arachis hypogaea HOM05D005355 ORTHO05D006591 1.1e-15 86.7 80 61.2
MD15G1351600 Malus domestica HOM05D005355 ORTHO05D006591 1.1e-15 86.7 76 64.5
Glyma.06G112300 Glycine max HOM05D005355 ORTHO05D006591 1.4e-15 86.3 75 62.7
MBI06_g20714_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D006591 2.4e-15 85.5 66 62.1
arahy.Tifrunner.gnm1.ann1.SCI4MN Arachis hypogaea HOM05D005355 ORTHO05D006591 4.1e-15 84.7 80 60.0
PGR044G2411 Punica granatum HOM05D005355 ORTHO05D006591 5.4e-15 84.3 78 57.7
Cfa016002 Carpinus fangiana HOM05D005355 ORTHO05D006591 7.0e-15 84.0 50 80.0
DCAR_011615 Daucus carota HOM05D005355 ORTHO05D006591 7.0e-15 84.0 61 65.6
VMungo1309G2754 Vigna mungo HOM05D005355 ORTHO05D006591 7.0e-15 84.0 52 76.9
TWI56G0611 Tripterygium wilfordii HOM05D005355 ORTHO05D006591 1.6e-14 82.8 75 60.0
vmacro00824 Vaccinium macrocarpon HOM05D005355 ORTHO05D006591 1.6e-14 82.8 71 57.7
CiPaw.06G029200 Carya illinoinensis HOM05D005355 ORTHO05D006591 2.0e-14 82.4 76 61.8
Medtr3g072480 Medicago truncatula HOM05D005355 ORTHO05D006591 2.0e-14 82.4 72 58.3
CsaV3_2G014020 Cucumis sativus L. HOM05D005355 ORTHO05D006591 2.7e-14 82.0 78 57.7
CDE06G1231 Ceratophyllum demersum HOM05D005355 ORTHO05D006591 4.5e-14 81.3 60 65.0
Atru.chr13.1434 Acer truncatum HOM05D005355 ORTHO05D006591 5.9e-14 80.9 79 57.0
Nitab4.5_0001803g0110 Nicotiana tabacum HOM05D005355 ORTHO05D006591 5.9e-14 80.9 71 57.7
MD00G1157400 Malus domestica HOM05D005355 ORTHO05D006591 1.0e-13 80.1 76 60.5
Sc01g0001210 Simmondsia chinensis HOM05D005355 ORTHO05D006591 1.0e-13 80.1 59 64.4
MSTRG.326 Avicennia marina HOM05D005355 ORTHO05D006591 1.3e-13 79.7 56 71.4
CANSAT25G1794 Cannabis sativa HOM05D005355 ORTHO05D006591 1.3e-13 79.7 76 55.3
SGA_v2.0_scaffold122G33176 Striga asiatica HOM05D005355 ORTHO05D006591 2.3e-13 79.0 62 64.5
Migut.F01876 Erythranthe guttata HOM05D005355 ORTHO05D006591 3.8e-13 78.2 62 64.5
TWI12G0790 Tripterygium wilfordii HOM05D005355 ORTHO05D006591 6.5e-13 77.4 75 54.7
Os11g0544600 Oryza sativa ssp. japonica HOM05D005355 ORTHO05D006591 8.6e-13 77.0 56 64.3
RcHm_v2.0_Chr6g0295601 Rosa chinensis HOM05D005355 ORTHO05D006591 1.1e-12 76.6 75 54.7
MBI15_g42534_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D006591 1.5e-12 76.3 60 61.7
Hund27026 Selenicereus undatus HOM05D005355 ORTHO05D006591 1.5e-12 76.3 66 59.1
Nitab4.5_0001273g0010 Nicotiana tabacum HOM05D005355 ORTHO05D006591 1.9e-12 75.9 68 57.4
THA.LOC104817273 Tarenaya hassleriana HOM05D005355 ORTHO05D006591 1.9e-12 75.9 76 56.6
Zm00001eb113700 Zea mays HOM05D005355 ORTHO05D006591 1.9e-12 75.9 77 54.5
Cc00_g04310 Coffea canephora HOM05D005355 ORTHO05D006591 3.2e-12 75.1 68 51.5
FvH4_2g26711 Fragaria vesca HOM05D005355 ORTHO05D006591 3.2e-12 75.1 79 53.2
FAN24G2565 Fragaria x ananassa HOM05D005355 ORTHO05D006591 3.2e-12 75.1 79 53.2
Solyc11g012920.3 Solanum lycopersicum HOM05D005355 ORTHO05D006591 3.2e-12 75.1 66 56.1
Sopen11g007660 Solanum pennellii HOM05D005355 ORTHO05D006591 3.2e-12 75.1 66 56.1
Lj4A622G14 Lonicera japonica HOM05D005355 ORTHO05D006591 4.2e-12 74.7 74 55.4
FAN20G1264 Fragaria x ananassa HOM05D005355 ORTHO05D006591 5.5e-12 74.3 79 51.9
Aa31LG9G14260 Aethionema arabicum HOM05D005355 ORTHO05D006591 7.2e-12 73.9 60 61.7
AUR62019052 Chenopodium quinoa HOM05D005355 ORTHO05D006591 7.2e-12 73.9 60 63.3
FAN15G2971 Fragaria x ananassa HOM05D005355 ORTHO05D006591 7.2e-12 73.9 92 48.9
Lsat_1_v5_gn_5_101461 Lactuca sativa HOM05D005355 ORTHO05D006591 7.2e-12 73.9 63 54.0
RhsimUnG0093800 Rhododendron simsii HOM05D005355 ORTHO05D006591 7.2e-12 73.9 96 50.0
CAN.G127.21 Capsicum annuum HOM05D005355 ORTHO05D006591 9.5e-12 73.6 67 53.7
ECA238G0419 Erigeron canadensis HOM05D005355 ORTHO05D006591 9.5e-12 73.6 58 58.6
MBI15_g20159_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D006591 1.2e-11 73.2 65 56.9
MBI15_g19197_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D006591 1.6e-11 72.8 64 57.8
Thhalv10029139m.g Eutrema salsugineum HOM05D005355 ORTHO05D006591 2.1e-11 72.4 75 54.7
ATR0104G007 Amborella trichopoda HOM05D005355 ORTHO05D006591 2.8e-11 72.0 60 58.3
Carub.0006s2687 Capsella rubella HOM05D005355 ORTHO05D006591 2.8e-11 72.0 71 52.1
FAN27G0453 Fragaria x ananassa HOM05D005355 ORTHO05D006591 2.8e-11 72.0 79 50.6
MBI15_g24178_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D006591 2.8e-11 72.0 62 58.1
Oeu062052.1 Olea europaea HOM05D005355 ORTHO05D006591 3.6e-11 71.6 59 61.0
Sp6g09690 Schrenkiella parvula HOM05D005355 ORTHO05D006591 4.7e-11 71.2 61 59.0
HanXRQChr04g0109451 Helianthus annuus HOM05D005355 ORTHO05D006591 6.1e-11 70.9 64 50.0
MBI15_g20157_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D010248 6.1e-11 70.9 64 56.2
EL10Ac1g01045 Beta vulgaris HOM05D005355 ORTHO05D006591 8.0e-11 70.5 63 60.3
CARHR036040 Cardamine hirsuta HOM05D005355 ORTHO05D006591 8.0e-11 70.5 80 47.5
Aqoxy6G00187 Aquilegia oxysepala HOM05D005355 ORTHO05D006591 1.0e-10 70.1 74 55.4
AT4G08310 Arabidopsis thaliana HOM05D005355 ORTHO05D006591 1.0e-10 70.1 67 53.7
arahy.Tifrunner.gnm1.ann1.V8LFJN Arachis hypogaea HOM05D005355 ORTHO05D006591 2.3e-10 68.9 60 56.7
Dinv27329 Davidia involucrata HOM05D005355 ORTHO05D006591 4.0e-10 68.2 78 55.1
Sp1g33640 Schrenkiella parvula HOM05D005355 ORTHO05D006591 4.0e-10 68.2 61 55.7
Cpa.g.sc36.52 Carica papaya HOM05D005355 ORTHO05D006591 1.2e-09 66.6 72 48.6
AL6G42080 Arabidopsis lyrata HOM05D005355 ORTHO05D006591 2.0e-09 65.9 65 53.8
BcaB07g33934 Brassica carinata HOM05D005355 ORTHO05D006591 2.6e-09 65.5 80 46.2
C06p00770 Brassica napus HOM05D005355 ORTHO05D006591 2.6e-09 65.5 61 52.5
BolC6t35219H Brassica oleracea HOM05D005355 ORTHO05D006591 2.6e-09 65.5 61 52.5
Thhalv10011453m.g Eutrema salsugineum HOM05D005355 ORTHO05D006591 3.4e-09 65.1 84 48.8
HPP92_011157 Vanilla planifolia HOM05D005355 ORTHO05D006591 7.5e-09 63.9 39 76.9
CARHR259390 Cardamine hirsuta HOM05D005355 ORTHO05D006591 9.8e-09 63.5 66 51.5
A10p07350 Brassica napus HOM05D005355 ORTHO05D006591 1.7e-08 62.8 84 44.0
BraSC36t46079Z Brassica rapa HOM05D005355 ORTHO05D006591 1.7e-08 62.8 84 44.0
AL1G52440 Arabidopsis lyrata HOM05D005355 ORTHO05D006591 2.2e-08 62.4 83 47.0
Pp3c21_16190 Physcomitrium patens HOM05D005355 ORTHO05D006591 3.7e-08 61.6 74 48.6
CDE06G1640 Ceratophyllum demersum HOM05D005355 ORTHO05D006591 8.3e-08 60.5 63 49.2
arahy.Tifrunner.gnm1.ann1.F65TCR Arachis hypogaea HOM05D005355 ORTHO05D006591 3.1e-07 58.5 36 75.0
Cpa.g.sc36.50 Carica papaya HOM05D005355 ORTHO05D006591 5.4e-07 57.8 74 39.2
Nitab4.5_0001803g0130 Nicotiana tabacum HOM05D005355 ORTHO05D006591 5.4e-07 57.8 75 44.0
unitig_52.g17510 Utricularia gibba HOM05D005355 ORTHO05D006467 7.0e-07 57.4 67 44.8
Mapoly0004s0202 Marchantia polymorpha HOM05D005355 ORTHO05D006591 9.2e-07 57.0 64 46.9
SMO367G1068 Selaginella moellendorffii HOM05D005355 ORTHO05D006591 1.2e-06 56.6 83 39.8
BcaC08g42867 Brassica carinata HOM05D005355 ORTHO05D006591 3.5e-06 55.1 73 42.5
Haze_00460 Corylus avellana HOM05D005355 ORTHO05D006591 4.5e-06 54.7 57 45.6
AT1G44780 Arabidopsis thaliana HOM05D005355 ORTHO05D006591 5.9e-06 54.3 73 39.7
SMO230G0121 Selaginella moellendorffii HOM05D005355 ORTHO05D006591 7.8e-06 53.9 83 38.6


User provided reference genes

Program Settings