Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn8g40194 Nelumbo nucifera HOM05D006471 ORTHO05D008157 3.2e-167 591.7 295 100.0
Nn2g12513 Nelumbo nucifera HOM05D006471 ORTHO05D008157 5.0e-120 434.9 272 76.8
TAR628G0373 Trochodendron aralioides HOM05D006471 ORTHO05D008157 1.2e-116 423.7 272 75.4
Actinidia04343 Actinidia chinensis HOM05D006471 ORTHO05D008157 2.6e-108 396.0 272 71.0
CSS0032634 Camellia sinensis var. sinensis HOM05D006471 ORTHO05D008157 6.4e-107 391.3 272 70.2
Aqoxy2G01235 Aquilegia oxysepala HOM05D006471 ORTHO05D008157 8.3e-107 391.0 272 69.1
CSS0035224 Camellia sinensis var. sinensis HOM05D006471 ORTHO05D008157 1.1e-106 390.6 272 69.9
Hma1.2p1_0044F.1_g026290 Hydrangea macrophylla HOM05D006471 ORTHO05D008157 5.0e-104 381.7 273 68.5
Dinv17647 Davidia involucrata HOM05D000200 ORTHO05D001546 8.6e-104 380.9 276 67.8
PSO782G0560 Papaver somniferum HOM05D006471 ORTHO05D008157 1.1e-103 380.6 275 67.6
CiPaw.05G172000 Carya illinoinensis HOM05D006471 ORTHO05D008157 1.5e-103 380.2 271 68.3
Aqoxy2G00030 Aquilegia oxysepala HOM05D006471 ORTHO05D008157 5.6e-103 378.3 272 67.3
Cfa008776 Carpinus fangiana HOM05D006471 ORTHO05D008157 5.6e-103 378.3 271 67.9
PGSC0003DMG400011512 Solanum tuberosum HOM05D006471 ORTHO05D008157 7.3e-103 377.9 271 67.2
Solyc04g008990.3 Solanum lycopersicum HOM05D006471 ORTHO05D008157 9.5e-103 377.5 271 66.8
Sopen04g004170 Solanum pennellii HOM05D006471 ORTHO05D008157 9.5e-103 377.5 271 66.4
vmacro16923 Vaccinium macrocarpon HOM05D006471 ORTHO05D008157 1.2e-102 377.1 270 68.5
GSVIVG01034416001 Vitis vinifera HOM05D006471 ORTHO05D008157 1.2e-102 377.1 269 68.4
Haze_11788 Corylus avellana HOM05D006471 ORTHO05D008157 2.1e-102 376.3 271 67.5
AUR62032950 Chenopodium quinoa HOM05D006471 ORTHO05D008157 2.8e-102 375.9 271 65.7
PSO170G1614 Papaver somniferum HOM05D006471 ORTHO05D008157 1.4e-101 373.6 275 66.9
Cfa014781 Carpinus fangiana HOM05D006857 ORTHO05D008679 5.2e-101 371.7 252 69.8
Sabra07G0063800 Salix brachista HOM05D006471 ORTHO05D008157 1.2e-100 370.5 273 68.9
Ah.16g106450 Amaranthus hybridus HOM05D000154 ORTHO05D000092 1.5e-100 370.2 272 65.4
RcHm_v2.0_Chr4g0446941 Rosa chinensis HOM05D006471 ORTHO05D008157 1.5e-100 370.2 278 66.2
Potri.007G075500 Populus trichocarpa HOM05D006471 ORTHO05D008157 2.6e-100 369.4 274 67.2
FvH4_4g37140 Fragaria vesca HOM05D006471 ORTHO05D008157 3.4e-100 369.0 276 66.3
Rhsim12G0193800 Rhododendron simsii HOM05D006471 ORTHO05D008157 3.4e-100 369.0 273 65.2
MSTRG.428 Avicennia marina HOM05D006471 ORTHO05D008157 1.7e-99 366.7 272 64.7
Duzib248G0471 Durio zibethinus HOM05D000200 ORTHO05D001546 2.9e-99 365.9 274 66.8
EL10Ac9g22981 Beta vulgaris HOM05D006471 ORTHO05D008157 3.7e-99 365.5 272 66.2
Manes.04G162800 Manihot esculenta HOM05D006471 ORTHO05D008157 3.7e-99 365.5 276 66.3
Nitab4.5_0005997g0050 Nicotiana tabacum HOM05D006471 ORTHO05D008157 4.9e-99 365.2 254 69.3
Peaxi162Scf00681g00221 Petunia axillaris HOM05D006471 ORTHO05D008157 4.9e-99 365.2 273 65.6
AUR62017731 Chenopodium quinoa HOM05D006471 ORTHO05D008157 6.4e-99 364.8 272 63.6
Thecc.02G154800 Theobroma cacao HOM05D006471 ORTHO05D008157 8.3e-99 364.4 273 66.3
TWI77G0721 Tripterygium wilfordii HOM05D006471 ORTHO05D008157 1.1e-98 364.0 274 66.1
Sc10g0006980 Simmondsia chinensis HOM05D006471 ORTHO05D008157 1.4e-98 363.6 272 66.2
TWI74G1585 Tripterygium wilfordii HOM05D006471 ORTHO05D008157 1.4e-98 363.6 273 66.3
CAN.G274.15 Capsicum annuum HOM05D006471 ORTHO05D008157 2.4e-98 362.8 271 64.9
Lj3A846G60 Lonicera japonica HOM05D006471 ORTHO05D008157 2.4e-98 362.8 269 65.4
DCAR_002605 Daucus carota HOM05D000200 ORTHO05D001546 4.1e-98 362.1 269 66.5
Gorai.012G135400 Gossypium raimondii HOM05D006471 ORTHO05D008157 5.4e-98 361.7 274 65.0
CANSAT78G1799 Cannabis sativa HOM05D006471 ORTHO05D008157 7.0e-98 361.3 272 64.3
Nitab4.5_0004979g0070 Nicotiana tabacum HOM05D006471 ORTHO05D008157 7.0e-98 361.3 252 68.3
Migut.L00869 Erythranthe guttata HOM05D006471 ORTHO05D008157 2.1e-97 359.8 255 69.0
Gohir.D04G148900 Gossypium hirsutum HOM05D006471 ORTHO05D008157 2.1e-97 359.8 274 64.6
Atru.chr11.1240 Acer truncatum HOM05D006471 ORTHO05D008157 2.7e-97 359.4 274 65.0
Gohir.A04G109424 Gossypium hirsutum HOM05D006471 ORTHO05D008157 3.5e-97 359.0 274 64.6
HanXRQChr03g0076951 Helianthus annuus HOM05D006471 ORTHO05D008157 3.5e-97 359.0 271 63.5
MD16G1004200 Malus domestica HOM05D006471 ORTHO05D008157 3.5e-97 359.0 278 65.5
SGA_v2.0_scaffold92G28263 Striga asiatica HOM05D006471 ORTHO05D008157 6.0e-97 358.2 281 63.3
COL.COLO4_33107 Corchorus olitorius HOM05D006471 ORTHO05D008157 7.8e-97 357.8 274 64.2
Eucgr.G02586 Eucalyptus grandis HOM05D006471 ORTHO05D008157 2.3e-96 356.3 271 64.2
Medtr1g114560 Medicago truncatula HOM05D006471 ORTHO05D008157 2.3e-96 356.3 252 68.7
Glyma.10G286400 Glycine max HOM05D006471 ORTHO05D008157 3.9e-96 355.5 252 67.9
CsaV3_5G029010 Cucumis sativus L. HOM05D006471 ORTHO05D008157 5.1e-96 355.1 254 66.9
MBI06_g44273_MAGBIO Magnolia biondii HOM05D006471 ORTHO05D008157 5.1e-96 355.1 275 66.2
Ca_11258_v3 Cicer arietinum L. HOM05D000200 ORTHO05D001546 6.6e-96 354.8 252 67.5
Lj5g0013377 Lotus japonicus HOM05D006471 ORTHO05D008157 6.6e-96 354.8 272 64.7
Ciclev10031833m.g Citrus clementina HOM05D006471 ORTHO05D008157 8.6e-96 354.4 273 64.1
Aa31LG3G18230 Aethionema arabicum HOM05D006471 ORTHO05D005636 1.1e-95 354.0 272 63.6
TPR.G4059 Trifolium pratense HOM05D006471 ORTHO05D008157 1.1e-95 354.0 252 66.7
SalBow2G1748 Salvia bowleyana HOM05D006471 ORTHO05D008157 1.5e-95 353.6 273 63.7
Carub.0006s0724 Capsella rubella HOM05D006471 ORTHO05D008157 1.9e-95 353.2 277 63.9
Lsat_1_v5_gn_0_15460 Lactuca sativa HOM05D006471 ORTHO05D008157 2.5e-95 352.8 274 63.9
MSTRG.8091 Avicennia marina HOM05D006471 ORTHO05D008157 3.3e-95 352.4 270 64.1
Thhalv10013886m.g Eutrema salsugineum HOM05D006471 ORTHO05D008157 3.3e-95 352.4 276 63.4
CARHR204730 Cardamine hirsuta HOM05D006471 ORTHO05D008157 1.2e-94 350.5 274 63.5
Psat6g234000 Pisum sativum HOM05D006471 ORTHO05D008157 1.6e-94 350.1 252 66.7
VMungo0720G2382 Vigna mungo HOM05D006471 ORTHO05D008157 1.6e-94 350.1 252 67.1
Phvul.007G014500 Phaseolus vulgaris HOM05D006471 ORTHO05D008157 2.1e-94 349.7 252 67.1
Sp6g34600 Schrenkiella parvula HOM05D006471 ORTHO05D008157 2.1e-94 349.7 274 63.1
CDE02G4670 Ceratophyllum demersum HOM05D006471 ORTHO05D008157 3.6e-94 349.0 276 62.0
Lalb_Chr06g0163931 Lupinus albus HOM05D006471 ORTHO05D008157 4.7e-94 348.6 252 67.5
Cpa.g.sc60.91 Carica papaya HOM05D006471 ORTHO05D008157 6.2e-94 348.2 254 68.1
arahy.Tifrunner.gnm1.ann1.EW69V8 Arachis hypogaea HOM05D006471 ORTHO05D008157 8.1e-94 347.8 252 65.9
Duzib132G0448 Durio zibethinus HOM05D006471 ORTHO05D008157 8.1e-94 347.8 254 66.9
BcaB01g05607 Brassica carinata HOM05D006471 ORTHO05D008157 2.3e-93 346.3 270 63.7
BcaB01g05611 Brassica carinata HOM05D006471 ORTHO05D008157 3.1e-93 345.9 265 64.9
A03p03780 Brassica napus HOM05D006471 ORTHO05D008157 3.1e-93 345.9 271 63.8
BraA03t09725Z Brassica rapa HOM05D006471 ORTHO05D008157 3.1e-93 345.9 271 63.8
AL6G18780 Arabidopsis lyrata HOM05D006471 ORTHO05D008157 4.4e-92 342.0 271 62.7
C03p04260 Brassica napus HOM05D006471 ORTHO05D008157 5.8e-92 341.7 271 63.5
BolC3t12958H Brassica oleracea HOM05D006471 ORTHO05D008157 5.8e-92 341.7 271 63.5
ClCG02G014150 Citrullus lanatus HOM05D006471 ORTHO05D008157 7.5e-92 341.3 309 56.0
PGR142G1667 Punica granatum HOM05D006471 ORTHO05D008157 9.9e-92 340.9 254 66.9
ATR0665G473 Amborella trichopoda HOM05D006471 ORTHO05D008157 1.3e-91 340.5 273 64.8
SGA_v2.0_scaffold580G53041 Striga asiatica HOM05D006471 ORTHO05D004488 2.9e-91 339.3 279 61.6
AT5G08340 Arabidopsis thaliana HOM05D006471 ORTHO05D008157 1.1e-90 337.4 274 62.0
SGA_v2.0_scaffold42G16129 Striga asiatica HOM05D006471 ORTHO05D008157 1.1e-90 337.4 323 56.3
AL6G34590 Arabidopsis lyrata HOM05D006471 ORTHO05D008157 1.4e-90 337.0 275 59.3
Sed0003381 Sechium edule HOM05D006471 ORTHO05D008157 3.2e-90 335.9 254 63.8
AT5G23330 Arabidopsis thaliana HOM05D006471 ORTHO05D008157 4.1e-90 335.5 273 60.4
THA.LOC104800739 Tarenaya hassleriana HOM05D006471 ORTHO05D008157 7.1e-90 334.7 272 60.3
SGA_v2.0_scaffold1G00551 Striga asiatica HOM05D006471 ORTHO05D008157 1.3e-88 330.5 267 62.5
CARHR190210 Cardamine hirsuta HOM05D006471 ORTHO05D008157 3.0e-88 329.3 274 59.5
unitig_749.g13340 Utricularia gibba HOM05D006471 ORTHO05D008157 3.0e-88 329.3 272 60.7
FAN17G0671 Fragaria x ananassa HOM05D006471 ORTHO05D008157 6.6e-88 328.2 257 64.6
Os03g0801700 Oryza sativa ssp. japonica HOM05D006471 ORTHO05D008157 4.3e-87 325.5 269 62.1
FAN07G1501 Fragaria x ananassa HOM05D002605 ORTHO05D002842 3.6e-86 322.4 236 67.4
THA.LOC104818378 Tarenaya hassleriana HOM05D006471 ORTHO05D008157 4.7e-86 322.0 255 61.2
Zm00001eb061200 Zea mays HOM05D006471 ORTHO05D008157 8.1e-86 321.2 273 61.5
MELO3C011756.2 Cucumis melo HOM05D006471 ORTHO05D008157 3.1e-85 319.3 365 49.0
ECA240G3241 Erigeron canadensis HOM05D006471 ORTHO05D008157 3.1e-85 319.3 229 64.6
arahy.Tifrunner.gnm1.ann1.V4ETXF Arachis hypogaea HOM05D006471 ORTHO05D008157 1.3e-83 313.9 342 49.4
Cc00_g09970 Coffea canephora HOM05D006471 ORTHO05D008157 1.3e-83 313.9 271 60.5
Prupe.1G349200 Prunus persica HOM05D006471 ORTHO05D008157 3.2e-82 309.3 235 65.1
Oeu006329.1 Olea europaea HOM05D006471 ORTHO05D008157 4.2e-82 308.9 270 58.9
QL08p056974 Quercus lobata HOM05D006471 ORTHO05D008157 4.2e-82 308.9 224 67.4
HPP92_017784 Vanilla planifolia HOM05D006471 ORTHO05D008157 3.5e-81 305.8 258 59.7
SEGI_40912 Sequoiadendron giganteum HOM05D006471 ORTHO05D008157 3.1e-77 292.7 284 55.6
Pp3c5_28930 Physcomitrium patens HOM05D006471 ORTHO05D008157 9.0e-69 264.6 231 58.9
Carub.0006s2111 Capsella rubella HOM05D006471 ORTHO05D008157 4.9e-67 258.8 232 55.6
MD13G1003200 Malus domestica HOM05D006471 ORTHO05D008157 4.2e-66 255.8 150 78.0
Mapoly0019s0104 Marchantia polymorpha HOM05D006471 ORTHO05D008157 1.5e-63 247.3 250 53.2
Pp3c14_5150 Physcomitrium patens HOM05D006471 ORTHO05D008157 7.4e-63 245.0 273 48.7
SMO141G0020 Selaginella moellendorffii HOM05D006471 ORTHO05D008157 1.2e-60 237.7 190 58.9
Glyma.20G102800 Glycine max HOM05D006471 ORTHO05D008157 4.8e-46 189.1 241 44.8
AagrBONN_evm.TU.Sc2ySwM_362.1554 Anthoceros agrestis HOM05D006471 ORTHO05D008157 2.9e-43 179.9 138 60.9
FAN12G2193 Fragaria x ananassa HOM05D006471 ORTHO05D008157 5.1e-40 169.1 136 63.2
MCO07G267 Micromonas commoda HOM05D006471 ORTHO05D008157 4.1e-37 159.5 188 46.8
Sc06g0004050 Simmondsia chinensis HOM05D006471 ORTHO05D008157 1.3e-35 154.5 145 57.9
Cre13.g607600 Chlamydomonas reinhardtii HOM05D006471 ORTHO05D008157 2.3e-24 117.1 323 30.3
QL08p056966 Quercus lobata HOM05D006471 ORTHO05D008157 3.6e-17 93.2 52 82.7
Carub.0006s2110 Capsella rubella HOM05D006471 ORTHO05D008157 8.8e-16 88.6 48 81.2
BolC9t53696H Brassica oleracea HOM05D006471 ORTHO05D008157 5.9e-12 75.9 83 47.0
arahy.Tifrunner.gnm1.ann1.SQAN1F Arachis hypogaea HOM05D006471 ORTHO05D008157 5.0e-11 72.8 46 71.7
SEGI_34336 Sequoiadendron giganteum HOM05D006471 ORTHO05D008157 2.0e-07 60.8 71 49.3


User provided reference genes

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