Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn8g40140 Nelumbo nucifera HOM05D002727 ORTHO05D002856 5.8e-152 540.8 265 100.0
Nn8g40185 Nelumbo nucifera HOM05D002727 ORTHO05D002856 5.0e-111 404.8 260 76.9
Nn8g40139 Nelumbo nucifera HOM05D002727 ORTHO05D002856 2.2e-103 379.4 235 81.3
Nn8g40141 Nelumbo nucifera HOM05D002727 ORTHO05D002856 2.2e-103 379.4 211 88.2
Nn2g12179 Nelumbo nucifera HOM05D002727 ORTHO05D002856 1.6e-72 276.9 262 59.2
Nn8g39635 Nelumbo nucifera HOM05D002727 ORTHO05D002856 1.8e-68 263.5 212 63.2
Nn2g12178 Nelumbo nucifera HOM05D002727 ORTHO05D002856 3.7e-66 255.8 214 63.1
Nn8g39630 Nelumbo nucifera HOM05D002727 ORTHO05D002856 2.1e-64 250.0 214 61.7
Nn2g12182 Nelumbo nucifera HOM05D002727 ORTHO05D002856 1.1e-62 244.2 200 63.0
Rhsim01G0019500 Rhododendron simsii HOM05D002727 ORTHO05D002856 2.2e-42 176.8 209 49.3
Rhsim01G0020200 Rhododendron simsii HOM05D002727 ORTHO05D002856 1.9e-41 173.7 205 47.3
Dinv43298 Davidia involucrata HOM05D002727 ORTHO05D002856 2.7e-40 169.9 193 49.2
Dinv42803 Davidia involucrata HOM05D002727 ORTHO05D002856 2.3e-39 166.8 187 49.2
Prupe.1G100500 Prunus persica HOM05D002727 ORTHO05D002856 1.1e-38 164.5 194 50.5
Rhsim01G0018300 Rhododendron simsii HOM05D002727 ORTHO05D002856 1.9e-38 163.7 194 49.0
Aqoxy4G00886 Aquilegia oxysepala HOM05D002727 ORTHO05D002856 8.1e-37 158.3 191 48.7
Dinv42800 Davidia involucrata HOM05D002727 ORTHO05D002856 4.5e-35 152.5 138 55.8
Dinv43301 Davidia involucrata HOM05D002727 ORTHO05D002856 4.5e-35 152.5 138 55.8
MD03G1035100 Malus domestica HOM05D002727 ORTHO05D002856 7.6e-35 151.8 150 52.0
GSVIVG01023712001 Vitis vinifera HOM05D002727 ORTHO05D002856 1.7e-34 150.6 191 47.6
Aqoxy4G00561 Aquilegia oxysepala HOM05D002727 ORTHO05D002856 8.4e-34 148.3 202 42.6
MD03G1107500 Malus domestica HOM05D002727 ORTHO05D002856 1.9e-33 147.1 146 52.7
Rhsim01G0018600 Rhododendron simsii HOM05D002727 ORTHO05D002856 5.5e-33 145.6 213 40.8
Aqoxy4G00571 Aquilegia oxysepala HOM05D002727 ORTHO05D002856 2.7e-32 143.3 182 44.5
Aqoxy3G02264 Aquilegia oxysepala HOM05D002727 ORTHO05D002856 1.0e-31 141.4 170 48.8
Actinidia02639 Actinidia chinensis HOM05D002727 ORTHO05D002856 2.3e-31 140.2 164 51.8
MD15G1046300 Malus domestica HOM05D002727 ORTHO05D002856 6.2e-29 132.1 166 46.4
QL02p098200 Quercus lobata HOM05D002727 ORTHO05D002856 6.9e-28 128.6 138 48.6
Rhsim01G0020900 Rhododendron simsii HOM05D002727 ORTHO05D002856 1.5e-27 127.5 262 37.4
Prupe.1G100600 Prunus persica HOM05D002727 ORTHO05D002856 4.2e-25 119.4 191 41.9
TWI34G1383 Tripterygium wilfordii HOM05D002727 ORTHO05D002856 1.1e-22 111.3 203 40.4
TAR622G1289 Trochodendron aralioides HOM05D002727 ORTHO05D002856 9.4e-17 91.7 174 35.6
Rhsim01G0017200 Rhododendron simsii HOM05D002727 ORTHO05D002856 3.6e-16 89.7 127 40.2
Rhsim01G0018500 Rhododendron simsii HOM05D002727 ORTHO05D002856 3.6e-16 89.7 127 40.2
Potri.008G127500 Populus trichocarpa HOM05D002727 ORTHO05D002856 1.8e-15 87.4 170 35.9
ClCG01G006130 Citrullus lanatus HOM05D002727 ORTHO05D002856 3.9e-15 86.3 182 35.7
Atru.chr11.406 Acer truncatum HOM05D002727 ORTHO05D002856 5.1e-15 85.9 183 36.1
CDE04G0093 Ceratophyllum demersum HOM05D002727 ORTHO05D002856 5.1e-15 85.9 174 35.6
Eucgr.G02206 Eucalyptus grandis HOM05D002727 ORTHO05D002856 5.1e-15 85.9 233 28.8
DCAR_007283 Daucus carota HOM05D002727 ORTHO05D002856 6.7e-15 85.5 178 33.1
Eucgr.G02208 Eucalyptus grandis HOM05D002727 ORTHO05D002856 2.0e-14 84.0 150 34.0
Eucgr.G02210 Eucalyptus grandis HOM05D002727 ORTHO05D002856 3.3e-14 83.2 149 34.2
CANSAT64G1895 Cannabis sativa HOM05D002727 ORTHO05D002856 4.3e-14 82.8 136 37.5
Aqoxy1G00996 Aquilegia oxysepala HOM05D002727 ORTHO05D002856 5.7e-14 82.4 200 34.0
RcHm_v2.0_Chr2g0175581 Rosa chinensis HOM05D002727 ORTHO05D002856 5.7e-14 82.4 145 39.3
CiPaw.06G012900 Carya illinoinensis HOM05D002727 ORTHO05D002856 9.7e-14 81.6 145 37.9
MD13G1028200 Malus domestica HOM05D002727 ORTHO05D002856 1.3e-13 81.3 143 40.6
QL01p002288 Quercus lobata HOM05D002727 ORTHO05D002856 1.3e-13 81.3 163 36.2
TPR.G24442 Trifolium pratense HOM05D002727 ORTHO05D002856 1.7e-13 80.9 134 37.3
Glyma.10G265700 Glycine max HOM05D002727 ORTHO05D002856 2.2e-13 80.5 136 37.5
CANSAT01G3036 Cannabis sativa HOM05D002727 ORTHO05D002856 2.8e-13 80.1 138 42.0
CsaV3_5G028530 Cucumis sativus L. HOM05D002727 ORTHO05D002856 2.8e-13 80.1 173 33.5
QL01p002083 Quercus lobata HOM05D002727 ORTHO05D002856 3.7e-13 79.7 183 33.3
Duzib251G0433 Durio zibethinus HOM05D002727 ORTHO05D002856 6.3e-13 79.0 175 34.9
Psat6g221920 Pisum sativum HOM05D002727 ORTHO05D002856 6.3e-13 79.0 173 32.9
arahy.Tifrunner.gnm1.ann1.E5JI7C Arachis hypogaea HOM05D002727 ORTHO05D002856 8.2e-13 78.6 183 32.2
ClCG05G022230 Citrullus lanatus HOM05D002727 ORTHO05D002856 8.2e-13 78.6 184 35.9
Thecc.02G279300 Theobroma cacao HOM05D002727 ORTHO05D002856 8.2e-13 78.6 170 34.1
arahy.Tifrunner.gnm1.ann1.NZR7KS Arachis hypogaea HOM05D002727 ORTHO05D002856 1.1e-12 78.2 183 32.2
Nn3g16463 Nelumbo nucifera HOM05D002727 ORTHO05D002856 1.1e-12 78.2 176 31.8
Sabra08G0096300 Salix brachista HOM05D002727 ORTHO05D002856 1.1e-12 78.2 125 38.4
Hma1.2p1_0114F.1_g055280 Hydrangea macrophylla HOM05D002727 ORTHO05D002856 1.4e-12 77.8 165 35.2
Aqoxy2G00907 Aquilegia oxysepala HOM05D002727 ORTHO05D002856 1.8e-12 77.4 169 34.3
Phvul.007G037300 Phaseolus vulgaris HOM05D002727 ORTHO05D002856 1.8e-12 77.4 136 35.3
RcHm_v2.0_Chr4g0440841 Rosa chinensis HOM05D002727 ORTHO05D002856 1.8e-12 77.4 140 40.7
Ca_24568_v3 Cicer arietinum L. HOM05D002727 ORTHO05D002856 2.4e-12 77.0 152 34.2
FvH4_6g53540 Fragaria vesca HOM05D002727 ORTHO05D002856 2.4e-12 77.0 137 37.2
Glyma.20G124900 Glycine max HOM05D002727 ORTHO05D002856 2.4e-12 77.0 136 36.8
Psat2g129760 Pisum sativum HOM05D002727 ORTHO05D002856 2.4e-12 77.0 134 35.1
QL02p071341 Quercus lobata HOM05D002727 ORTHO05D002856 2.4e-12 77.0 136 36.8
Rhsim09G0100100 Rhododendron simsii HOM05D008460 ORTHO05D001602 3.1e-12 76.6 177 35.0
FvH4_4g32150 Fragaria vesca HOM05D002727 ORTHO05D002856 4.1e-12 76.3 139 41.0
FAN22G0940 Fragaria x ananassa HOM05D002727 ORTHO05D002856 4.1e-12 76.3 139 41.0
FAN05G4306 Fragaria x ananassa HOM05D002727 ORTHO05D002856 5.3e-12 75.9 136 36.8
Lalb_Chr17g0338701 Lupinus albus HOM05D002727 ORTHO05D002856 5.3e-12 75.9 189 34.9
Sed0008746 Sechium edule HOM05D002727 ORTHO05D002856 5.3e-12 75.9 183 36.1
Haze_11036 Corylus avellana HOM05D002727 ORTHO05D002856 6.9e-12 75.5 148 35.1
FAN12G1004 Fragaria x ananassa HOM05D002727 ORTHO05D002856 6.9e-12 75.5 139 40.3
MD16G1031100 Malus domestica HOM05D002727 ORTHO05D002856 6.9e-12 75.5 175 36.6
Cpa.g.sc199.5 Carica papaya HOM05D013024 ORTHO05D015548 9.1e-12 75.1 151 37.1
Cfa008577 Carpinus fangiana HOM05D002727 ORTHO05D002856 9.1e-12 75.1 148 35.1
Ca_11101_v3 Cicer arietinum L. HOM05D002727 ORTHO05D002856 9.1e-12 75.1 136 34.6
Ciclev10017720m.g Citrus clementina HOM05D002727 ORTHO05D002856 9.1e-12 75.1 175 32.6
FAN14G5438 Fragaria x ananassa HOM05D002727 ORTHO05D002856 9.1e-12 75.1 137 36.5
Sp7g01010 Schrenkiella parvula HOM05D002727 ORTHO05D002856 9.1e-12 75.1 165 32.1
VMungo0720G2475 Vigna mungo HOM05D002727 ORTHO05D002856 9.1e-12 75.1 176 33.0
CSS0022209 Camellia sinensis var. sinensis HOM05D002727 ORTHO05D002856 1.2e-11 74.7 151 32.5
Ciclev10017676m.g Citrus clementina HOM05D002727 ORTHO05D002856 1.2e-11 74.7 173 31.8
Medtr1g108470 Medicago truncatula HOM05D002727 ORTHO05D002856 1.2e-11 74.7 186 33.9
Prupe.1G322000 Prunus persica HOM05D002727 ORTHO05D002856 1.2e-11 74.7 184 37.0
Sed0024961 Sechium edule HOM05D002727 ORTHO05D002856 1.2e-11 74.7 181 32.0
Thecc.02G278300 Theobroma cacao HOM05D002727 ORTHO05D002856 1.2e-11 74.7 175 32.0
Lalb_Chr21g0308511 Lupinus albus HOM05D002727 ORTHO05D002856 1.5e-11 74.3 176 31.2
Peaxi162Scf00205g00023 Petunia axillaris HOM05D002727 ORTHO05D002856 2.0e-11 73.9 137 35.8
HanXRQChr08g0212641 Helianthus annuus HOM05D002727 ORTHO05D002856 2.6e-11 73.6 165 33.3
Thecc.09G156200 Theobroma cacao HOM05D013024 ORTHO05D015548 2.6e-11 73.6 159 30.8
Thecc.09G157300 Theobroma cacao HOM05D013024 ORTHO05D015548 3.4e-11 73.2 162 29.6
MELO3C005314.2 Cucumis melo HOM05D002727 ORTHO05D002856 4.5e-11 72.8 126 35.7
BraA04t17062Z Brassica rapa HOM05D002727 ORTHO05D002856 5.9e-11 72.4 172 31.4
Lj5g0017764 Lotus japonicus HOM05D002727 ORTHO05D002856 7.7e-11 72.0 186 33.9
ATR0012G059 Amborella trichopoda HOM05D002727 ORTHO05D002856 1.0e-10 71.6 150 36.0
A04p14000 Brassica napus HOM05D002727 ORTHO05D002856 1.0e-10 71.6 172 31.4
MELO3C012299.2 Cucumis melo HOM05D002727 ORTHO05D002856 1.0e-10 71.6 177 32.8
FAN14G2593 Fragaria x ananassa HOM05D002727 ORTHO05D002856 1.0e-10 71.6 144 34.7
MD13G1026900 Malus domestica HOM05D002727 ORTHO05D002856 1.0e-10 71.6 169 32.0
Cpa.g.sc65.122 Carica papaya HOM05D002727 ORTHO05D002856 1.3e-10 71.2 180 33.9
Actinidia15249 Actinidia chinensis HOM05D002727 ORTHO05D002856 1.7e-10 70.9 206 31.1
Actinidia36683 Actinidia chinensis HOM05D002727 ORTHO05D002856 1.7e-10 70.9 206 30.6
Cpa.g.sc171.13 Carica papaya HOM05D002727 ORTHO05D002856 1.7e-10 70.9 141 29.1
FAN03G1798 Fragaria x ananassa HOM05D002727 ORTHO05D002856 1.7e-10 70.9 199 29.6
Psat3g178240 Pisum sativum HOM05D002727 ORTHO05D002856 1.7e-10 70.9 200 30.0
Solyc05g008320.1 Solanum lycopersicum HOM05D002727 ORTHO05D002856 1.7e-10 70.9 243 28.8
Sopen05g004150 Solanum pennellii HOM05D002727 ORTHO05D002856 1.7e-10 70.9 243 28.8
C04p48030 Brassica napus HOM05D002727 ORTHO05D002856 2.2e-10 70.5 186 31.7
BolC4t26395H Brassica oleracea HOM05D002727 ORTHO05D002856 2.2e-10 70.5 186 31.7
CANSAT11G2620 Cannabis sativa HOM05D013024 ORTHO05D015548 2.2e-10 70.5 159 33.3
Sabra08G0096800 Salix brachista HOM05D002727 ORTHO05D002856 2.2e-10 70.5 182 32.4
BcaC02g08989 Brassica carinata HOM05D002727 ORTHO05D002856 2.9e-10 70.1 179 30.2
FAN07G1376 Fragaria x ananassa HOM05D002727 ORTHO05D002856 2.9e-10 70.1 139 38.8
PGR102G0802 Punica granatum HOM05D002727 ORTHO05D002856 2.9e-10 70.1 172 30.8
PGSC0003DMG400030506 Solanum tuberosum HOM05D002727 ORTHO05D002856 2.9e-10 70.1 137 34.3
THA.LOC104824571 Tarenaya hassleriana HOM05D002727 ORTHO05D002856 2.9e-10 70.1 170 31.2
Thecc.09G156700 Theobroma cacao HOM05D013024 ORTHO05D015548 2.9e-10 70.1 206 29.1
AT5G40940 Arabidopsis thaliana HOM05D002727 ORTHO05D002856 3.8e-10 69.7 165 30.9
Hma1.2p1_0951F.1_g240760 Hydrangea macrophylla HOM05D002727 ORTHO05D002856 3.8e-10 69.7 147 34.7
Hma1.2p1_2764F.1_g328145 Hydrangea macrophylla HOM05D002727 ORTHO05D002856 3.8e-10 69.7 147 34.7
Manes.09G062812 Manihot esculenta HOM05D013024 ORTHO05D015548 3.8e-10 69.7 138 33.3
Medtr5g044170 Medicago truncatula HOM05D002727 ORTHO05D002856 3.8e-10 69.7 135 34.1
TPR.G4843 Trifolium pratense HOM05D002727 ORTHO05D002856 3.8e-10 69.7 148 33.8
CANSAT21G1445 Cannabis sativa HOM05D013024 ORTHO05D015548 5.0e-10 69.3 149 30.9
CARHR213470 Cardamine hirsuta HOM05D002727 ORTHO05D002856 5.0e-10 69.3 165 30.3
CsaV3_5G034890 Cucumis sativus L. HOM05D002727 ORTHO05D002856 6.5e-10 68.9 179 31.3
FAN06G2836 Fragaria x ananassa HOM05D002727 ORTHO05D002856 6.5e-10 68.9 166 30.7
Ah.02g128090 Amaranthus hybridus HOM05D002727 ORTHO05D002856 8.5e-10 68.6 214 30.4
Lj2g0009169 Lotus japonicus HOM05D002727 ORTHO05D002856 8.5e-10 68.6 190 33.2
Nitab4.5_0006134g0020 Nicotiana tabacum HOM05D002727 ORTHO05D002856 1.4e-09 67.8 137 35.0
PGR119G0434 Punica granatum HOM05D002727 ORTHO05D002856 1.4e-09 67.8 105 38.1
Manes.17G075200 Manihot esculenta HOM05D002727 ORTHO05D002856 1.9e-09 67.4 174 32.2
unitig_26.g9074 Utricularia gibba HOM05D002727 ORTHO05D002856 1.9e-09 67.4 181 36.5
CiPaw.05G247600 Carya illinoinensis HOM05D002727 ORTHO05D002856 2.5e-09 67.0 176 30.7
DCAR_023615 Daucus carota HOM05D002727 ORTHO05D002856 2.5e-09 67.0 172 29.1
Thecc.09G156100 Theobroma cacao HOM05D013024 ORTHO05D015548 2.5e-09 67.0 168 29.8
Thecc.09G156800 Theobroma cacao HOM05D013024 ORTHO05D015548 2.5e-09 67.0 168 29.8
TWI56G0192 Tripterygium wilfordii HOM05D002727 ORTHO05D002856 2.5e-09 67.0 171 28.7
vmacro10627 Vaccinium macrocarpon HOM05D002727 ORTHO05D002856 2.5e-09 67.0 185 31.4
Atru.chr6.2573 Acer truncatum HOM05D002727 ORTHO05D002856 4.2e-09 66.2 141 30.5
AL7G48630 Arabidopsis lyrata HOM05D002727 ORTHO05D002856 4.2e-09 66.2 172 30.8
VMungo0720G0381 Vigna mungo HOM05D002727 ORTHO05D002856 4.2e-09 66.2 101 38.6
Aa31LG1G13580 Aethionema arabicum HOM05D002727 ORTHO05D002856 5.5e-09 65.9 166 30.7
Thhalv10028170m.g Eutrema salsugineum HOM05D002727 ORTHO05D002856 5.5e-09 65.9 179 30.7
Medtr4g084160 Medicago truncatula HOM05D002727 ORTHO05D002856 5.5e-09 65.9 133 36.8
Glyma.09G119800 Glycine max HOM05D002727 ORTHO05D002856 7.2e-09 65.5 142 33.1
Potri.008G128200 Populus trichocarpa HOM05D002727 ORTHO05D002856 7.2e-09 65.5 182 30.8
arahy.Tifrunner.gnm1.ann1.A4HJXM Arachis hypogaea HOM05D002727 ORTHO05D002856 1.2e-08 64.7 134 34.3
Haze_14633 Corylus avellana HOM05D013024 ORTHO05D015548 1.6e-08 64.3 184 31.0
Lsat_1_v5_gn_3_54560 Lactuca sativa HOM05D002727 ORTHO05D002856 1.6e-08 64.3 147 32.7
Thecc.09G156600 Theobroma cacao HOM05D013024 ORTHO05D015548 1.6e-08 64.3 168 29.2
Atru.chr11.374 Acer truncatum HOM05D002727 ORTHO05D002856 2.7e-08 63.5 129 37.2
ECA233G4969 Erigeron canadensis HOM05D002727 ORTHO05D002856 3.6e-08 63.2 169 32.5
BcaB06g27576 Brassica carinata HOM05D002727 ORTHO05D002856 4.7e-08 62.8 166 29.5
Dinv16190 Davidia involucrata HOM05D002727 ORTHO05D002856 4.7e-08 62.8 184 28.8
Manes.14G135600 Manihot esculenta HOM05D002727 ORTHO05D002856 4.7e-08 62.8 171 31.0
unitig_26.g9076 Utricularia gibba HOM05D002727 ORTHO05D002856 4.7e-08 62.8 182 33.5
arahy.Tifrunner.gnm1.ann1.L56H08 Arachis hypogaea HOM05D002727 ORTHO05D002856 6.1e-08 62.4 170 31.8
FvH4_6g20740 Fragaria vesca HOM05D002727 ORTHO05D002856 7.9e-08 62.0 129 34.1
FAN05G5197 Fragaria x ananassa HOM05D002727 ORTHO05D002856 7.9e-08 62.0 143 30.8
FAN02G0051 Fragaria x ananassa HOM05D002727 ORTHO05D002856 1.4e-07 61.2 144 31.9
FAN05G5380 Fragaria x ananassa HOM05D002727 ORTHO05D002856 1.4e-07 61.2 143 30.8
unitig_27.g25263 Utricularia gibba HOM05D002727 ORTHO05D002856 1.8e-07 60.8 195 30.3
Nn6g35116 Nelumbo nucifera HOM05D002727 ORTHO05D002856 3.0e-07 60.1 80 48.8
HanXRQChr15g0488631 Helianthus annuus HOM05D002727 ORTHO05D002856 5.1e-07 59.3 145 31.7
SGA_v2.0_scaffold170G38831 Striga asiatica HOM05D002727 ORTHO05D002856 5.1e-07 59.3 175 32.6
EL10Ac6g14255 Beta vulgaris HOM05D002727 ORTHO05D002856 6.7e-07 58.9 172 33.1
FAN06G1995 Fragaria x ananassa HOM05D002727 ORTHO05D002856 6.7e-07 58.9 151 29.8
FAN15G1981 Fragaria x ananassa HOM05D002727 ORTHO05D002856 6.7e-07 58.9 136 32.4
Lsat_1_v5_gn_8_43200 Lactuca sativa HOM05D002727 ORTHO05D002856 8.8e-07 58.5 152 30.9
Thecc.09G157200 Theobroma cacao HOM05D013024 ORTHO05D015548 8.8e-07 58.5 172 30.2
Cfa008587 Carpinus fangiana HOM05D002727 ORTHO05D002856 3.3e-06 56.6 132 34.1
Oeu044348.1 Olea europaea HOM05D002727 ORTHO05D002856 3.3e-06 56.6 170 29.4
Migut.E00413 Erythranthe guttata HOM05D002727 ORTHO05D002856 5.7e-06 55.8 141 32.6


User provided reference genes

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