Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn8g40122 Nelumbo nucifera HOM05D004228 ORTHO05D005137 0.0e+00 1570.8 773 100.0
TAR626G1406 Trochodendron aralioides HOM05D004228 ORTHO05D005137 0.0e+00 1305.4 756 83.7
Dinv21435 Davidia involucrata HOM05D004228 ORTHO05D005137 0.0e+00 1241.1 766 79.1
GSVIVG01016092001 Vitis vinifera HOM05D004228 ORTHO05D005137 0.0e+00 1235.3 766 78.1
CSS0026873 Camellia sinensis var. sinensis HOM05D004228 ORTHO05D005137 0.0e+00 1232.2 756 77.6
RcHm_v2.0_Chr2g0132121 Rosa chinensis HOM05D004228 ORTHO05D005137 0.0e+00 1230.3 766 77.4
Prupe.3G104700 Prunus persica HOM05D004228 ORTHO05D005137 0.0e+00 1226.5 769 76.6
Aqoxy7G02340 Aquilegia oxysepala HOM05D004228 ORTHO05D005137 0.0e+00 1224.2 756 77.5
CiPaw.02G164000 Carya illinoinensis HOM05D004228 ORTHO05D005137 0.0e+00 1217.6 750 77.5
FvH4_6g28160 Fragaria vesca HOM05D004228 ORTHO05D005137 0.0e+00 1214.1 751 77.6
FAN14G1073 Fragaria x ananassa HOM05D004228 ORTHO05D005137 0.0e+00 1212.6 752 77.4
FAN09G0969 Fragaria x ananassa HOM05D004228 ORTHO05D005137 0.0e+00 1212.2 752 77.4
Actinidia25487 Actinidia chinensis HOM05D004228 ORTHO05D005137 0.0e+00 1202.6 751 77.1
Potri.003G185600 Populus trichocarpa HOM05D004228 ORTHO05D005137 0.0e+00 1197.6 752 76.9
Potri.003G185951 Populus trichocarpa HOM05D004228 ORTHO05D005137 0.0e+00 1196.8 752 76.9
Rhsim08G0202500 Rhododendron simsii HOM05D004228 ORTHO05D005137 0.0e+00 1195.3 791 73.5
Thecc.06G048200 Theobroma cacao HOM05D004228 ORTHO05D005137 0.0e+00 1194.5 752 75.7
Potri.003G185776 Populus trichocarpa HOM05D004228 ORTHO05D005137 0.0e+00 1193.7 752 76.6
PSO170G5168 Papaver somniferum HOM05D004228 ORTHO05D005137 0.0e+00 1192.6 750 77.5
Solyc08g075390.4 Solanum lycopersicum HOM05D004228 ORTHO05D005137 0.0e+00 1192.2 768 75.3
Atru.chr1.2817 Acer truncatum HOM05D004228 ORTHO05D005137 0.0e+00 1186.4 756 75.9
Sopen08g024020 Solanum pennellii HOM05D004228 ORTHO05D005137 0.0e+00 1184.1 753 76.1
Lj6g0018144 Lotus japonicus HOM05D004228 ORTHO05D005137 0.0e+00 1183.3 752 76.5
CANSAT64G2586 Cannabis sativa HOM05D004228 ORTHO05D005137 0.0e+00 1181.8 776 73.8
Duzib160G0712 Durio zibethinus HOM05D004228 ORTHO05D005137 0.0e+00 1181.8 751 75.4
Ciclev10024933m.g Citrus clementina HOM05D004228 ORTHO05D005137 0.0e+00 1181.0 751 75.1
Cc08_g05800 Coffea canephora HOM05D004228 ORTHO05D005137 0.0e+00 1179.5 768 74.3
Ca_13679_v3 Cicer arietinum L. HOM05D004228 ORTHO05D005137 0.0e+00 1179.1 752 75.7
TWI12G1267 Tripterygium wilfordii HOM05D004228 ORTHO05D005137 0.0e+00 1179.1 754 75.6
CAN.G930.1 Capsicum annuum HOM05D004228 ORTHO05D005137 0.0e+00 1178.3 766 74.0
MSTRG.13911 Avicennia marina HOM05D004228 ORTHO05D005137 0.0e+00 1175.2 766 73.8
Sabra03G0135800 Salix brachista HOM05D004228 ORTHO05D005137 0.0e+00 1173.3 778 73.7
Psat4g022640 Pisum sativum HOM05D004228 ORTHO05D005137 0.0e+00 1171.0 752 75.0
ATR0789G048 Amborella trichopoda HOM05D004228 ORTHO05D005137 0.0e+00 1170.6 757 74.9
Sed0017026 Sechium edule HOM05D004228 ORTHO05D005137 0.0e+00 1168.3 754 74.8
ECA233G3708 Erigeron canadensis HOM05D004228 ORTHO05D005137 0.0e+00 1166.0 768 72.9
Glyma.13G072500 Glycine max HOM05D004228 ORTHO05D005137 0.0e+00 1165.2 752 75.0
Gorai.011G001100 Gossypium raimondii HOM05D004228 ORTHO05D005137 0.0e+00 1164.4 768 73.2
Gohir.D10G000700 Gossypium hirsutum HOM05D004228 ORTHO05D005137 0.0e+00 1162.5 767 72.9
Gohir.A10G000600 Gossypium hirsutum HOM05D004228 ORTHO05D005137 0.0e+00 1159.4 767 72.9
HPP92_017167 Vanilla planifolia HOM05D004228 ORTHO05D005137 0.0e+00 1158.3 754 72.9
HanXRQChr13g0411161 Helianthus annuus HOM05D004228 ORTHO05D005137 0.0e+00 1155.6 751 73.9
Haze_16698 Corylus avellana HOM05D004228 ORTHO05D005137 0.0e+00 1154.4 875 66.3
Migut.E01375 Erythranthe guttata HOM05D004228 ORTHO05D005137 0.0e+00 1153.7 754 72.8
Phvul.006G018900 Phaseolus vulgaris HOM05D004228 ORTHO05D005137 0.0e+00 1151.7 752 73.8
arahy.Tifrunner.gnm1.ann1.1BZV33 Arachis hypogaea HOM05D004228 ORTHO05D005137 0.0e+00 1149.8 736 75.4
THA.LOC104813593 Tarenaya hassleriana HOM05D004228 ORTHO05D005137 0.0e+00 1149.0 752 73.1
Lalb_Chr18g0048351 Lupinus albus HOM05D004228 ORTHO05D005137 0.0e+00 1145.2 751 73.8
VMungo0540G0565 Vigna mungo HOM05D004228 ORTHO05D005137 0.0e+00 1144.8 752 73.3
ClCG09G003440 Citrullus lanatus HOM05D004228 ORTHO05D005137 0.0e+00 1143.6 773 72.1
Ah.09g231750 Amaranthus hybridus HOM05D004228 ORTHO05D005137 0.0e+00 1142.5 751 74.2
MELO3C023479.2 Cucumis melo HOM05D004228 ORTHO05D005137 0.0e+00 1142.5 739 75.1
MELO3C023478.2 Cucumis melo HOM05D004228 ORTHO05D005137 0.0e+00 1142.1 754 73.5
DCAR_030908 Daucus carota HOM05D004228 ORTHO05D005137 0.0e+00 1140.6 767 71.6
CsaV3_7G031770 Cucumis sativus L. HOM05D004228 ORTHO05D005137 0.0e+00 1139.0 736 74.9
HanXRQChr17g0558091 Helianthus annuus HOM05D004228 ORTHO05D005137 0.0e+00 1139.0 754 73.5
BraA07t30343Z Brassica rapa HOM05D004228 ORTHO05D005137 0.0e+00 1137.1 750 72.5
Lsat_1_v5_gn_3_53241 Lactuca sativa HOM05D004228 ORTHO05D005137 0.0e+00 1135.9 752 73.8
EL10Ac8g19421 Beta vulgaris HOM05D004228 ORTHO05D005137 0.0e+00 1134.8 754 72.9
A07p26990 Brassica napus HOM05D004228 ORTHO05D005137 0.0e+00 1134.0 750 72.3
CsaV3_7G031780 Cucumis sativus L. HOM05D004228 ORTHO05D005137 0.0e+00 1131.3 754 73.1
Thhalv10018131m.g Eutrema salsugineum HOM05D004228 ORTHO05D005137 0.0e+00 1131.3 750 71.9
Zm00001eb192570 Zea mays HOM05D004228 ORTHO05D005137 0.0e+00 1129.4 752 72.5
Lsat_1_v5_gn_6_17241 Lactuca sativa HOM05D004228 ORTHO05D005137 0.0e+00 1127.9 768 72.8
CARHR073460 Cardamine hirsuta HOM05D004228 ORTHO05D005137 0.0e+00 1127.5 751 71.1
C06p29710 Brassica napus HOM05D004228 ORTHO05D005137 0.0e+00 1127.1 750 71.6
BolC6t38132H Brassica oleracea HOM05D004228 ORTHO05D005137 0.0e+00 1125.9 750 71.3
BcaNung04171 Brassica carinata HOM05D004228 ORTHO05D005137 0.0e+00 1125.2 750 71.3
Os02g0793300 Oryza sativa ssp. japonica HOM05D004228 ORTHO05D005137 0.0e+00 1124.0 750 72.5
Sp5g34750 Schrenkiella parvula HOM05D004228 ORTHO05D005137 0.0e+00 1123.2 750 71.3
BcaB02g07234 Brassica carinata HOM05D004228 ORTHO05D005137 0.0e+00 1119.4 750 71.3
AT1G79690 Arabidopsis thaliana HOM05D004228 ORTHO05D005137 0.0e+00 1117.4 751 71.0
AL2G40390 Arabidopsis lyrata HOM05D004228 ORTHO05D005137 0.0e+00 1114.4 751 71.0
Carub.0002s2655 Capsella rubella HOM05D004228 ORTHO05D005137 0.0e+00 1109.7 751 71.1
AUR62002649 Chenopodium quinoa HOM05D004228 ORTHO05D005137 0.0e+00 1106.7 762 70.9
DCAR_002193 Daucus carota HOM05D004228 ORTHO05D005137 0.0e+00 1100.5 768 69.8
ECA240G2553 Erigeron canadensis HOM05D004228 ORTHO05D005137 0.0e+00 1100.5 751 71.0
BcaB02g08706 Brassica carinata HOM05D004228 ORTHO05D005137 0.0e+00 1098.2 750 69.9
C06p53520 Brassica napus HOM05D004228 ORTHO05D005137 0.0e+00 1097.4 752 70.2
BcaC08g47528 Brassica carinata HOM05D004228 ORTHO05D005137 0.0e+00 1092.4 749 70.5
Aa31LG4G1300 Aethionema arabicum HOM05D004228 ORTHO05D005137 0.0e+00 1092.0 753 70.1
ECA240G4106 Erigeron canadensis HOM05D004228 ORTHO05D005137 0.0e+00 1083.9 746 70.4
BraA07t31978Z Brassica rapa HOM05D004228 ORTHO05D005137 0.0e+00 1079.3 749 69.6
BolC6t40368H Brassica oleracea HOM05D004228 ORTHO05D005137 0.0e+00 1078.9 752 69.4
MELO3C023481.2 Cucumis melo HOM05D004228 ORTHO05D005137 5.3e-312 1074.3 753 69.6
A07p44700 Brassica napus HOM05D004228 ORTHO05D005137 3.1e-310 1068.1 754 68.8
Actinidia18265 Actinidia chinensis HOM05D004228 ORTHO05D005137 6.8e-310 1067.0 656 77.3
Medtr3g437740 Medicago truncatula HOM05D004228 ORTHO05D005137 2.2e-308 1062.0 699 73.5
vmacro19079 Vaccinium macrocarpon HOM05D004228 ORTHO05D005137 2.7e-306 1055.0 762 69.3
Peaxi162Scf00193g00726 Petunia axillaris HOM05D004228 ORTHO05D005137 7.8e-306 1053.5 763 68.9
SGA_v2.0_scaffold121G33058 Striga asiatica HOM05D004228 ORTHO05D005137 1.9e-304 1048.9 707 71.6
THA.LOC104808168 Tarenaya hassleriana HOM05D004228 ORTHO05D005137 7.3e-304 1047.0 751 68.8
ATR0580G052 Amborella trichopoda HOM05D004228 ORTHO05D005137 2.8e-303 1045.0 747 68.3
Eucgr.J03134 Eucalyptus grandis HOM05D004228 ORTHO05D005137 3.8e-300 1034.6 667 74.7
VMungo1080G1878 Vigna mungo HOM05D004228 ORTHO05D005137 8.4e-300 1033.5 742 69.5
FAN02G0630 Fragaria x ananassa HOM05D004228 ORTHO05D005137 1.6e-298 1029.2 691 72.4
MD17G1227300 Malus domestica HOM05D004228 ORTHO05D005137 7.1e-291 1003.8 765 66.8
unitig_37.g12907 Utricularia gibba HOM05D004228 ORTHO05D005137 8.7e-289 996.9 766 64.0
arahy.Tifrunner.gnm1.ann1.GHRN5T Arachis hypogaea HOM05D004228 ORTHO05D005137 1.1e-283 979.9 760 65.7
Pp3c5_190 Physcomitrium patens HOM05D004228 ORTHO05D005137 1.5e-280 969.5 749 64.6
SMO337G0028 Selaginella moellendorffii HOM05D004228 ORTHO05D005137 1.4e-278 963.0 748 62.6
Mapoly0059s0059 Marchantia polymorpha HOM05D004228 ORTHO05D005137 1.5e-277 959.5 744 64.4
arahy.Tifrunner.gnm1.ann1.XEX8KQ Arachis hypogaea HOM05D004228 ORTHO05D005137 5.1e-273 944.5 760 63.9
Nitab4.5_0002244g0120 Nicotiana tabacum HOM05D004228 ORTHO05D005137 1.8e-270 936.0 635 72.3
Nitab4.5_0000030g0500 Nicotiana tabacum HOM05D004228 ORTHO05D005137 2.6e-269 932.2 661 69.7
AagrBONN_evm.TU.Sc2ySwM_117.2286 Anthoceros agrestis HOM05D004228 ORTHO05D005137 1.8e-249 866.3 680 63.2
Lsat_1_v5_gn_0_21180 Lactuca sativa HOM05D004228 ORTHO05D005137 7.2e-243 844.3 646 64.6
CsaV3_7G031760 Cucumis sativus L. HOM05D004228 ORTHO05D003934 4.7e-242 841.6 564 71.3
Lsat_1_v5_gn_0_21260 Lactuca sativa HOM05D004228 ORTHO05D005137 2.4e-238 829.3 644 64.3
Manes.11G069700 Manihot esculenta HOM05D004228 ORTHO05D005137 1.0e-236 823.9 539 74.0
Hma1.2p1_0338F.1_g129690 Hydrangea macrophylla HOM05D004228 ORTHO05D005137 4.0e-225 785.4 504 75.2
AUR62034058 Chenopodium quinoa HOM05D004228 ORTHO05D005137 3.7e-215 752.3 745 54.4
Oeu057157.1 Olea europaea HOM05D004228 ORTHO05D005137 6.8e-193 678.3 443 73.8
arahy.Tifrunner.gnm1.ann1.W5V7W0 Arachis hypogaea HOM05D004228 ORTHO05D005137 1.3e-180 637.5 424 73.1
MBI14_g16439_MAGBIO Magnolia biondii HOM05D004228 ORTHO05D005137 2.2e-159 567.0 605 52.2
PSO017G5477 Papaver somniferum HOM05D004228 ORTHO05D005137 2.1e-157 560.5 374 74.3
PSO017G2203 Papaver somniferum HOM05D004228 ORTHO05D005137 1.1e-145 521.5 328 75.9
SEGI_32687 Sequoiadendron giganteum HOM05D004228 ORTHO05D005137 1.3e-130 471.5 369 62.6
COL.COLO4_26790 Corchorus olitorius HOM05D004228 ORTHO05D005137 6.3e-114 416.0 273 73.3
Lsat_1_v5_gn_3_49001 Lactuca sativa HOM05D004228 ORTHO05D005137 6.8e-100 369.4 262 68.3
Cpa.g.sc167.19 Carica papaya HOM05D004228 ORTHO05D005137 1.2e-96 358.6 249 67.5
COL.COLO4_26791 Corchorus olitorius HOM05D004228 ORTHO05D005137 7.3e-78 296.2 320 51.6
MBI14_g16438_MAGBIO Magnolia biondii HOM05D004228 ORTHO05D005137 3.2e-73 280.8 162 79.0
RcHm_v2.0_Chr2g0132171 Rosa chinensis HOM05D004228 ORTHO05D005137 3.5e-72 277.3 260 60.0
MD09G1228800 Malus domestica HOM05D004228 ORTHO05D005137 1.0e-71 275.8 266 55.3
MD00G1188200 Malus domestica HOM05D004228 ORTHO05D005137 1.4e-65 255.4 252 54.4
Lsat_1_v5_gn_6_87921 Lactuca sativa HOM05D004228 ORTHO05D005137 4.3e-62 243.8 215 60.5
CBR_g49119 Chara braunii HOM05D004228 ORTHO05D005137 7.3e-62 243.0 222 54.1
Gorai.007G245800 Gossypium raimondii HOM05D004228 ORTHO05D005137 6.9e-60 236.5 151 76.2
Gorai.008G198300 Gossypium raimondii HOM05D004228 ORTHO05D005137 3.9e-55 220.7 133 78.9
Gohir.D12G184901 Gossypium hirsutum HOM05D004228 ORTHO05D005137 3.1e-52 211.1 133 75.9
CBR_g49132 Chara braunii HOM05D004228 ORTHO05D005137 2.3e-47 194.9 156 61.5
Glyma.20G046501 Glycine max HOM05D004228 ORTHO05D005137 1.9e-46 191.8 150 63.3
Cfa001845 Carpinus fangiana HOM05D004228 ORTHO05D005137 9.0e-44 183.0 118 76.3
CBR_g49120 Chara braunii HOM05D000019 ORTHO05D000002 1.2e-43 182.6 209 48.8
SEGI_17966 Sequoiadendron giganteum HOM05D004228 ORTHO05D005137 7.1e-41 173.3 120 67.5
Gorai.006G048700 Gossypium raimondii HOM05D004228 ORTHO05D005137 6.7e-39 166.8 86 88.4
Oeu057158.1 Olea europaea HOM05D004228 ORTHO05D005137 2.4e-36 158.3 85 84.7
SEGI_21553 Sequoiadendron giganteum HOM05D004228 ORTHO05D005137 3.1e-36 157.9 101 71.3
FAN02G0140 Fragaria x ananassa HOM05D004228 ORTHO05D005137 5.3e-36 157.1 87 85.1
Nitab4.5_0002244g0110 Nicotiana tabacum HOM05D004228 ORTHO05D005137 1.2e-35 156.0 103 73.8
MD09G1229100 Malus domestica HOM05D004228 ORTHO05D005137 4.5e-35 154.1 85 82.4
Nitab4.5_0000030g0490 Nicotiana tabacum HOM05D004228 ORTHO05D005137 2.9e-34 151.4 100 74.0
Glyma.20G046401 Glycine max HOM05D004228 ORTHO05D005137 1.2e-32 146.0 92 77.2
CDE02G2004 Ceratophyllum demersum HOM05D004228 ORTHO05D005137 3.9e-31 141.0 104 70.2
CBR_g49131 Chara braunii HOM05D007088 ORTHO05D008477 5.1e-31 140.6 95 65.3
SEGI_04747 Sequoiadendron giganteum HOM05D004228 ORTHO05D005137 5.1e-31 140.6 86 70.9
Gohir.A06G076350 Gossypium hirsutum HOM05D004228 ORTHO05D005137 1.8e-28 132.1 79 74.7
Gohir.D02G099801 Gossypium hirsutum HOM05D004228 ORTHO05D005137 9.0e-28 129.8 79 74.7
Gohir.A07G034550 Gossypium hirsutum HOM05D004228 ORTHO05D005137 2.0e-27 128.6 79 73.4
Gohir.A05G304350 Gossypium hirsutum HOM05D004228 ORTHO05D005137 4.5e-27 127.5 73 78.1
Gohir.D13G121066 Gossypium hirsutum HOM05D004228 ORTHO05D005137 5.9e-27 127.1 75 80.0
MD00G1188000 Malus domestica HOM05D004228 ORTHO05D005137 8.5e-26 123.2 72 79.2
Gorai.002G214900 Gossypium raimondii HOM05D004228 ORTHO05D005137 4.2e-25 120.9 60 90.0
Gohir.D09G001001 Gossypium hirsutum HOM05D004228 ORTHO05D005137 4.6e-24 117.5 204 37.3
SEGI_15998 Sequoiadendron giganteum HOM05D004228 ORTHO05D005137 4.6e-24 117.5 75 69.3
Gorai.009G406300 Gossypium raimondii HOM05D004228 ORTHO05D005137 5.1e-23 114.0 206 35.9
Lsat_1_v5_gn_5_149700 Lactuca sativa HOM05D004228 ORTHO05D016156 6.3e-21 107.1 86 65.1
MCO12G087 Micromonas commoda HOM05D004228 ORTHO05D005137 1.4e-15 89.4 146 38.4
Actinidia00024 Actinidia chinensis HOM05D000639 ORTHO05D019441 5.1e-15 87.4 77 55.8
MBI14_g16442_MAGBIO Magnolia biondii HOM05D004228 ORTHO05D005137 1.4e-12 79.3 45 75.6
Lsat_1_v5_gn_4_114980 Lactuca sativa HOM05D004228 ORTHO05D005137 1.3e-10 72.8 122 36.1
Cpa.g.sc167.21 Carica papaya HOM05D004228 ORTHO05D043558 6.5e-10 70.5 37 73.0
Pp3c5_70 Physcomitrium patens HOM05D004228 ORTHO05D005137 5.5e-09 67.4 44 65.9
Gohir.A11G044150 Gossypium hirsutum HOM05D004228 ORTHO05D005137 1.4e-07 62.8 28 92.9
Cre08.g381800 Chlamydomonas reinhardtii HOM05D004228 ORTHO05D005137 5.2e-07 60.8 147 32.7
SMO367G0306 Selaginella moellendorffii HOM05D003800 ORTHO05D004549 2.6e-06 58.5 144 32.6
CARHR076790 Cardamine hirsuta HOM05D003800 ORTHO05D004549 4.4e-06 57.8 177 28.2
Lsat_1_v5_gn_1_82200 Lactuca sativa HOM05D002111 ORTHO05D002160 4.4e-06 57.8 54 55.6
Nitab4.5_0001435g0050 Nicotiana tabacum HOM05D003800 ORTHO05D004549 4.4e-06 57.8 144 33.3
Peaxi162Scf00048g00815 Petunia axillaris HOM05D003800 ORTHO05D004549 4.4e-06 57.8 144 33.3
C03p40290 Brassica napus HOM05D003800 ORTHO05D004549 5.7e-06 57.4 144 32.6
BolC3t16294H Brassica oleracea HOM05D003800 ORTHO05D004549 5.7e-06 57.4 144 32.6
CAN.G217.10 Capsicum annuum HOM05D003800 ORTHO05D004549 7.5e-06 57.0 144 32.6
Ah.04g158990 Amaranthus hybridus HOM05D003800 ORTHO05D004549 9.7e-06 56.6 144 32.6
MBI11_g44548_MAGBIO Magnolia biondii HOM05D003800 ORTHO05D004549 9.7e-06 56.6 144 32.6


User provided reference genes

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