Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn8g39976 Nelumbo nucifera HOM05D004690 ORTHO05D005527 7.3e-87 323.9 172 100.0
Nn2g12436 Nelumbo nucifera HOM05D004690 ORTHO05D005527 9.6e-47 190.7 141 78.0
TAR383G0346 Trochodendron aralioides HOM05D004690 ORTHO05D005527 2.6e-36 156.0 142 67.6
GSVIVG01023642001 Vitis vinifera HOM05D004690 ORTHO05D005527 3.7e-30 135.6 140 58.6
MBI15_g27186_MAGBIO Magnolia biondii HOM05D004690 ORTHO05D005527 3.4e-28 129.0 146 56.8
CiPaw.16G107700 Carya illinoinensis HOM05D004690 ORTHO05D005527 3.2e-26 122.5 140 55.0
Haze_19160 Corylus avellana HOM05D004690 ORTHO05D005527 3.2e-26 122.5 146 58.2
Thecc.09G151500 Theobroma cacao HOM05D004690 ORTHO05D005527 3.2e-26 122.5 140 57.9
Manes.14G143400 Manihot esculenta HOM05D004690 ORTHO05D005527 1.6e-25 120.2 143 58.0
Hma1.2p1_0028F.1_g017650 Hydrangea macrophylla HOM05D004690 ORTHO05D005527 2.7e-25 119.4 145 55.2
Cfa020803 Carpinus fangiana HOM05D004690 ORTHO05D005527 3.6e-25 119.0 146 56.8
PSO111G0014 Papaver somniferum HOM05D004690 ORTHO05D005527 3.6e-25 119.0 149 53.7
Dinv42835 Davidia involucrata HOM05D004690 ORTHO05D005527 4.6e-25 118.6 147 56.5
Dinv43264 Davidia involucrata HOM05D004690 ORTHO05D005527 4.6e-25 118.6 147 56.5
PSO782G2525 Papaver somniferum HOM05D004690 ORTHO05D005527 7.9e-25 117.9 149 53.0
CSS0044573 Camellia sinensis var. sinensis HOM05D004690 ORTHO05D005527 3.0e-24 115.9 145 53.1
Thhalv10000269m.g Eutrema salsugineum HOM05D004690 ORTHO05D005527 3.0e-24 115.9 150 51.3
CSS0047585 Camellia sinensis var. sinensis HOM05D004690 ORTHO05D005527 1.5e-23 113.6 148 52.7
CDE02G3377 Ceratophyllum demersum HOM05D004690 ORTHO05D005527 1.5e-23 113.6 145 53.8
Cpa.g.sc46.177 Carica papaya HOM05D004690 ORTHO05D005527 1.9e-23 113.2 143 53.8
COL.COLO4_23958 Corchorus olitorius HOM05D004690 ORTHO05D005527 1.9e-23 113.2 140 55.0
Gohir.A07G037900 Gossypium hirsutum HOM05D004690 ORTHO05D005527 1.9e-23 113.2 140 54.3
Gorai.001G044800 Gossypium raimondii HOM05D004690 ORTHO05D005527 1.9e-23 113.2 140 54.3
Sabra18G0089400 Salix brachista HOM05D004690 ORTHO05D005527 2.5e-23 112.8 152 53.3
Gohir.D07G042000 Gossypium hirsutum HOM05D004690 ORTHO05D005527 4.3e-23 112.1 140 53.6
CARHR118290 Cardamine hirsuta HOM05D004690 ORTHO05D005527 5.7e-23 111.7 151 51.7
Ciclev10009165m.g Citrus clementina HOM05D004690 ORTHO05D005527 5.7e-23 111.7 143 52.4
PGR102G1430 Punica granatum HOM05D004690 ORTHO05D005527 5.7e-23 111.7 140 57.1
Duzib150G0069 Durio zibethinus HOM05D004690 ORTHO05D005527 7.4e-23 111.3 140 54.3
Potri.018G104000 Populus trichocarpa HOM05D004690 ORTHO05D005527 9.7e-23 110.9 146 53.4
Prupe.7G265300 Prunus persica HOM05D004690 ORTHO05D005527 9.7e-23 110.9 143 51.7
A04p18380 Brassica napus HOM05D004690 ORTHO05D005527 4.8e-22 108.6 145 50.3
BcaC02g08501 Brassica carinata HOM05D004690 ORTHO05D005527 8.2e-22 107.8 145 50.3
BolC4t26921H Brassica oleracea HOM05D004690 ORTHO05D005527 8.2e-22 107.8 145 50.3
BraA04t17449Z Brassica rapa HOM05D004690 ORTHO05D005527 8.2e-22 107.8 140 51.4
C04p53650 Brassica napus HOM05D004690 ORTHO05D005527 1.4e-21 107.1 145 50.3
Carub.0004s0323 Capsella rubella HOM05D004690 ORTHO05D005527 1.4e-21 107.1 146 51.4
AT2G24060 Arabidopsis thaliana HOM05D004690 ORTHO05D005527 1.8e-21 106.7 146 53.4
BcaB06g27964 Brassica carinata HOM05D004690 ORTHO05D005527 1.8e-21 106.7 144 50.0
Sp4g02970 Schrenkiella parvula HOM05D004690 ORTHO05D005527 1.8e-21 106.7 151 48.3
AL4G14110 Arabidopsis lyrata HOM05D004690 ORTHO05D005527 2.4e-21 106.3 148 50.7
FvH4_1g00690 Fragaria vesca HOM05D004690 ORTHO05D005527 5.3e-21 105.1 141 51.1
FAN26G1928 Fragaria x ananassa HOM05D004690 ORTHO05D005527 5.3e-21 105.1 141 51.1
FAN28G2863 Fragaria x ananassa HOM05D004690 ORTHO05D005527 5.3e-21 105.1 141 51.1
Hma1.2p1_0028F.1_g017670 Hydrangea macrophylla HOM05D004690 ORTHO05D005527 6.9e-21 104.8 148 48.6
CiPaw.15G165900 Carya illinoinensis HOM05D004690 ORTHO05D005527 1.2e-20 104.0 116 59.5
Aa31LG7G12770 Aethionema arabicum HOM05D004690 ORTHO05D005527 2.0e-20 103.2 153 47.7
RcHm_v2.0_Chr2g0085411 Rosa chinensis HOM05D004690 ORTHO05D005527 2.0e-20 103.2 145 49.0
QL02p093831 Quercus lobata HOM05D004690 ORTHO05D005527 2.6e-20 102.8 150 50.0
arahy.Tifrunner.gnm1.ann1.VFXC0H Arachis hypogaea HOM05D004690 ORTHO05D005527 3.4e-20 102.4 142 52.8
arahy.Tifrunner.gnm1.ann1.RJ6BPE Arachis hypogaea HOM05D004690 ORTHO05D005527 4.5e-20 102.1 142 52.8
Phvul.003G154700 Phaseolus vulgaris HOM05D004690 ORTHO05D005527 5.9e-20 101.7 140 51.4
Hma1.2p1_0222F.1_g093770 Hydrangea macrophylla HOM05D004690 ORTHO05D005527 7.7e-20 101.3 146 50.0
FAN23G2407 Fragaria x ananassa HOM05D004690 ORTHO05D005527 1.3e-19 100.5 140 50.0
FAN23G2925 Fragaria x ananassa HOM05D004690 ORTHO05D005527 1.3e-19 100.5 140 50.0
VMungo1215G2193 Vigna mungo HOM05D004690 ORTHO05D005527 1.3e-19 100.5 143 51.7
CANSAT11G0185 Cannabis sativa HOM05D004690 ORTHO05D005527 1.7e-19 100.1 147 49.7
TWI63G1092 Tripterygium wilfordii HOM05D004690 ORTHO05D005527 1.7e-19 100.1 144 52.8
Eucgr.C02505 Eucalyptus grandis HOM05D004690 ORTHO05D005527 6.5e-19 98.2 188 43.6
Sp7g28600 Schrenkiella parvula HOM05D004690 ORTHO05D005527 6.5e-19 98.2 142 47.9
A03p60250 Brassica napus HOM05D004690 ORTHO05D005527 8.5e-19 97.8 143 49.0
Carub.0007s0984 Capsella rubella HOM05D004690 ORTHO05D005527 8.5e-19 97.8 145 49.0
AUR62028351 Chenopodium quinoa HOM05D004690 ORTHO05D005527 8.5e-19 97.8 125 52.8
Actinidia38313 Actinidia chinensis HOM05D004690 ORTHO05D005527 1.1e-18 97.4 163 45.4
BcaNung02747 Brassica carinata HOM05D004690 ORTHO05D005527 1.1e-18 97.4 144 48.6
C07p58160 Brassica napus HOM05D004690 ORTHO05D005527 1.1e-18 97.4 144 48.6
BolC7t46275H Brassica oleracea HOM05D004690 ORTHO05D005527 1.1e-18 97.4 144 48.6
HanXRQChr10g0307591 Helianthus annuus HOM05D004690 ORTHO05D005527 1.1e-18 97.4 87 67.8
CARHR238570 Cardamine hirsuta HOM05D004690 ORTHO05D005527 1.4e-18 97.1 144 48.6
Lsat_1_v5_gn_5_89380 Lactuca sativa HOM05D004690 ORTHO05D005527 1.9e-18 96.7 143 49.0
Sc18g0003050 Simmondsia chinensis HOM05D004690 ORTHO05D005527 2.5e-18 96.3 119 55.5
AT4G30690 Arabidopsis thaliana HOM05D004690 ORTHO05D005527 4.2e-18 95.5 142 48.6
AUR62025348 Chenopodium quinoa HOM05D004690 ORTHO05D005527 5.5e-18 95.1 125 51.2
HanXRQChr05g0138951 Helianthus annuus HOM05D004690 ORTHO05D005527 5.5e-18 95.1 118 54.2
MD02G1005700 Malus domestica HOM05D004690 ORTHO05D005527 5.5e-18 95.1 148 49.3
THA.LOC104803547 Tarenaya hassleriana HOM05D004690 ORTHO05D005527 7.2e-18 94.7 147 46.9
ATR0019G027 Amborella trichopoda HOM05D004690 ORTHO05D005527 9.4e-18 94.4 71 67.6
AL7G21430 Arabidopsis lyrata HOM05D004690 ORTHO05D005527 1.2e-17 94.0 144 45.1
PGSC0003DMG400011147 Solanum tuberosum HOM05D004690 ORTHO05D005527 1.2e-17 94.0 142 47.9
MELO3C004125.2 Cucumis melo HOM05D004690 ORTHO05D005527 1.6e-17 93.6 165 43.0
Glyma.02G205700 Glycine max HOM05D004690 ORTHO05D005527 2.1e-17 93.2 147 47.6
Lj4g0007308 Lotus japonicus HOM05D004690 ORTHO05D005527 2.1e-17 93.2 144 47.9
BraA03t15065Z Brassica rapa HOM05D004690 ORTHO05D005527 2.7e-17 92.8 144 48.6
Atru.chr7.16 Acer truncatum HOM05D004690 ORTHO05D005527 4.7e-17 92.0 87 63.2
MSTRG.10705 Avicennia marina HOM05D004690 ORTHO05D005527 4.7e-17 92.0 143 48.3
ECA236G1766 Erigeron canadensis HOM05D004690 ORTHO05D005527 4.7e-17 92.0 76 65.8
Solyc07g005830.3 Solanum lycopersicum HOM05D004690 ORTHO05D005527 6.1e-17 91.7 142 48.6
Sopen07g001930 Solanum pennellii HOM05D004690 ORTHO05D005527 6.1e-17 91.7 142 48.6
Cc06_g14700 Coffea canephora HOM05D004690 ORTHO05D005527 1.8e-16 90.1 141 50.4
Migut.K00308 Erythranthe guttata HOM05D004690 ORTHO05D005527 3.0e-16 89.4 144 42.4
Rhsim01G0027300 Rhododendron simsii HOM05D004690 ORTHO05D005527 3.9e-16 89.0 147 47.6
ECA234G3490 Erigeron canadensis HOM05D004690 ORTHO05D005527 5.1e-16 88.6 55 83.6
ClCG02G014380 Citrullus lanatus HOM05D004690 ORTHO05D005527 6.7e-16 88.2 163 41.1
Glyma.17G072300 Glycine max HOM05D004690 ORTHO05D005527 6.7e-16 88.2 143 49.0
Hund08935 Selenicereus undatus HOM05D004690 ORTHO05D005527 6.7e-16 88.2 118 51.7
Sed0014938 Sechium edule HOM05D004690 ORTHO05D005527 8.8e-16 87.8 71 64.8
DCAR_017916 Daucus carota HOM05D004690 ORTHO05D005527 1.1e-15 87.4 145 47.6
EL10Ac8g18927 Beta vulgaris HOM05D004690 ORTHO05D005527 2.0e-15 86.7 119 47.1
Peaxi162Scf00401g00330 Petunia axillaris HOM05D004690 ORTHO05D005527 2.0e-15 86.7 144 47.9
Dinv41359 Davidia involucrata HOM05D004690 ORTHO05D005527 2.6e-15 86.3 93 57.0
Potri.006G182000 Populus trichocarpa HOM05D004690 ORTHO05D005527 2.6e-15 86.3 103 54.4
Ah.09g228780 Amaranthus hybridus HOM05D004690 ORTHO05D005527 4.4e-15 85.5 133 44.4
BcaB06g27963 Brassica carinata HOM05D004690 ORTHO05D005527 4.4e-15 85.5 62 74.2
CsaV3_2G007620 Cucumis sativus L. HOM05D004690 ORTHO05D005527 4.4e-15 85.5 167 41.3
Sed0017216 Sechium edule HOM05D004690 ORTHO05D005527 4.4e-15 85.5 170 42.4
Lalb_Chr12g0198781 Lupinus albus HOM05D004690 ORTHO05D005527 7.4e-15 84.7 53 83.0
Lsat_1_v5_gn_8_63881 Lactuca sativa HOM05D004690 ORTHO05D005527 9.7e-15 84.3 147 45.6
Thhalv10025935m.g Eutrema salsugineum HOM05D004690 ORTHO05D005527 1.3e-14 84.0 53 83.0
Aqoxy7G03362 Aquilegia oxysepala HOM05D004690 ORTHO05D005527 1.7e-14 83.6 146 43.8
unitig_899.g15465 Utricularia gibba HOM05D004690 ORTHO05D005527 1.7e-14 83.6 84 59.5
Psat7g006440 Pisum sativum HOM05D004690 ORTHO05D005527 4.8e-14 82.0 115 47.8
FAN23G1872 Fragaria x ananassa HOM05D004690 ORTHO05D005527 1.1e-13 80.9 131 45.8
Lj7C462G3 Lonicera japonica HOM05D000062 ORTHO05D000043 2.4e-13 79.7 117 49.6
MD15G1150400 Malus domestica HOM05D004690 ORTHO05D005527 2.4e-13 79.7 84 58.3
SEGI_33455 Sequoiadendron giganteum HOM05D004690 ORTHO05D005527 2.4e-13 79.7 144 45.8
SGA_v2.0_scaffold63G21785 Striga asiatica HOM05D004690 ORTHO05D005527 4.1e-13 79.0 81 56.8
SalBow1G0331 Salvia bowleyana HOM05D004690 ORTHO05D005527 5.3e-13 78.6 142 38.7
Aa31LG2G19730 Aethionema arabicum HOM05D004690 ORTHO05D005527 2.6e-12 76.3 49 75.5
Medtr4g130530 Medicago truncatula HOM05D004690 ORTHO05D005527 7.7e-12 74.7 140 42.1
vmacro16787 Vaccinium macrocarpon HOM05D004690 ORTHO05D005527 1.3e-11 73.9 204 36.8
Glyma.04G154000 Glycine max HOM05D004690 ORTHO05D005527 2.2e-11 73.2 52 75.0
Ca_21142_v3 Cicer arietinum L. HOM05D004690 ORTHO05D005527 1.1e-10 70.9 132 40.9
BcaNung04824 Brassica carinata HOM05D004690 ORTHO05D005527 2.5e-10 69.7 48 75.0
AagrBONN_evm.TU.Sc2ySwM_228.3886 Anthoceros agrestis HOM05D004690 ORTHO05D005527 7.2e-10 68.2 92 46.7
Mapoly0090s0068 Marchantia polymorpha HOM05D004690 ORTHO05D005527 7.2e-10 68.2 101 42.6
Oeu054266.1 Olea europaea HOM05D004690 ORTHO05D005527 9.4e-10 67.8 50 72.0
Pp3c14_5800 Physcomitrium patens HOM05D004690 ORTHO05D005527 1.6e-09 67.0 107 43.9
Pp3c2_19940 Physcomitrium patens HOM05D004690 ORTHO05D005527 1.6e-09 67.0 100 45.0
HPP92_018341 Vanilla planifolia HOM05D004690 ORTHO05D005527 1.6e-09 67.0 74 54.1
Zm00001eb257720 Zea mays HOM05D004690 ORTHO05D005527 4.7e-09 65.5 55 63.6
CBR_g7972 Chara braunii HOM05D004690 ORTHO05D005527 5.2e-08 62.0 70 48.6
Os02g0794400 Oryza sativa ssp. japonica HOM05D004690 ORTHO05D005527 3.3e-07 59.3 53 58.5
HanXRQChr10g0314901 Helianthus annuus HOM05D000214 ORTHO05D000131 6.3e-06 55.1 35 82.9


User provided reference genes

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