Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn8g39911 Nelumbo nucifera HOM05D007692 ORTHO05D009696 1.4e-60 236.1 121 100.0
Nn2g12400 Nelumbo nucifera HOM05D007692 ORTHO05D009696 6.8e-31 137.5 110 68.2
TAR624G0897 Trochodendron aralioides HOM05D007692 ORTHO05D009696 8.9e-31 137.1 112 65.2
MD08G1071600 Malus domestica HOM05D007692 ORTHO05D009696 2.7e-27 125.6 109 61.5
QL02p017055 Quercus lobata HOM05D007692 ORTHO05D009696 4.6e-27 124.8 109 65.1
Sabra06G0170400 Salix brachista HOM05D007692 ORTHO05D009696 4.6e-27 124.8 107 64.5
MBI13_g42817_MAGBIO Magnolia biondii HOM05D007692 ORTHO05D009696 1.0e-26 123.6 110 60.9
MD15G1049600 Malus domestica HOM05D007692 ORTHO05D009696 1.0e-26 123.6 109 62.4
QL02p017043 Quercus lobata HOM05D007692 ORTHO05D009696 1.0e-26 123.6 109 64.2
RcHm_v2.0_Chr6g0311901 Rosa chinensis HOM05D007692 ORTHO05D009696 1.0e-26 123.6 109 64.2
Prupe.1G403900 Prunus persica HOM05D007692 ORTHO05D009696 5.0e-26 121.3 109 64.2
FvH4_2g30960 Fragaria vesca HOM05D007692 ORTHO05D009696 6.6e-26 120.9 109 62.4
MELO3C016914.2 Cucumis melo HOM05D007692 ORTHO05D009696 8.6e-26 120.6 108 60.2
CsaV3_4G036060 Cucumis sativus L. HOM05D007692 ORTHO05D009696 8.6e-26 120.6 108 60.2
ClCG05G015760 Citrullus lanatus HOM05D007692 ORTHO05D009696 1.1e-25 120.2 108 62.0
Potri.006G220500 Populus trichocarpa HOM05D007692 ORTHO05D009696 1.1e-25 120.2 106 63.2
Haze_18297 Corylus avellana HOM05D007692 ORTHO05D009696 1.5e-25 119.8 107 63.6
CiPaw.15G091700 Carya illinoinensis HOM05D007692 ORTHO05D009696 7.3e-25 117.5 105 60.0
Duzib168G1711 Durio zibethinus HOM05D007692 ORTHO05D009696 2.1e-24 115.9 111 62.2
Cfa017868 Carpinus fangiana HOM05D007692 ORTHO05D009696 4.7e-24 114.8 107 61.7
Manes.16G085800 Manihot esculenta HOM05D007692 ORTHO05D009696 6.2e-24 114.4 103 61.2
CAN.G567.82 Capsicum annuum HOM05D007692 ORTHO05D009696 3.1e-23 112.1 99 63.6
Thecc.09G063700 Theobroma cacao HOM05D007692 ORTHO05D009696 4.0e-23 111.7 107 61.7
Solyc08g061640.1 Solanum lycopersicum HOM05D007692 ORTHO05D009696 1.5e-22 109.8 99 62.6
Sopen08g017100 Solanum pennellii HOM05D007692 ORTHO05D009696 1.5e-22 109.8 99 62.6
PGSC0003DMG400045083 Solanum tuberosum HOM05D007692 ORTHO05D009696 1.5e-22 109.8 99 62.6
PSO541G2080 Papaver somniferum HOM05D007692 ORTHO05D009696 2.0e-22 109.4 107 58.9
arahy.Tifrunner.gnm1.ann1.0E4SK3 Arachis hypogaea HOM05D007692 ORTHO05D009696 3.4e-22 108.6 109 58.7
Hma1.2p1_0278F.1_g111850 Hydrangea macrophylla HOM05D007692 ORTHO05D009696 5.8e-22 107.8 110 57.3
COL.COLO4_21142 Corchorus olitorius HOM05D007692 ORTHO05D009696 7.5e-22 107.5 105 61.0
Dinv22937 Davidia involucrata HOM05D007692 ORTHO05D009696 7.5e-22 107.5 105 58.1
Nitab4.5_0008422g0010 Nicotiana tabacum HOM05D007692 ORTHO05D009696 7.5e-22 107.5 99 60.6
DCAR_001232 Daucus carota HOM05D006390 ORTHO05D007899 1.3e-21 106.7 119 53.8
Peaxi162Scf00486g00102 Petunia axillaris HOM05D007692 ORTHO05D009696 1.7e-21 106.3 98 62.2
PSO675G1902 Papaver somniferum HOM05D007692 ORTHO05D009696 2.9e-21 105.5 107 57.9
Sed0007061 Sechium edule HOM05D007692 ORTHO05D009696 2.9e-21 105.5 108 57.4
Aqoxy2G03896 Aquilegia oxysepala HOM05D007692 ORTHO05D009696 3.7e-21 105.1 110 54.5
HPP92_004156 Vanilla planifolia HOM05D007692 ORTHO05D009696 4.9e-21 104.8 104 54.8
VMungo0647G2522 Vigna mungo HOM05D007692 ORTHO05D009696 6.4e-21 104.4 107 57.0
Lj5g0021751 Lotus japonicus HOM05D007692 ORTHO05D009696 8.3e-21 104.0 110 56.4
Nitab4.5_0000446g0120 Nicotiana tabacum HOM05D007692 ORTHO05D009696 8.3e-21 104.0 99 58.6
Eucgr.C00729 Eucalyptus grandis HOM05D007692 ORTHO05D009696 1.1e-20 103.6 105 58.1
TPR.G38893 Trifolium pratense HOM05D007692 ORTHO05D009696 1.1e-20 103.6 110 56.4
Zm00001eb005780 Zea mays HOM05D007692 ORTHO05D009696 1.9e-20 102.8 109 52.3
Medtr1g015470 Medicago truncatula HOM05D007692 ORTHO05D009696 2.4e-20 102.4 110 56.4
PGR031G0311 Punica granatum HOM05D007692 ORTHO05D009696 5.4e-20 101.3 97 59.8
Lsat_1_v5_gn_7_58320 Lactuca sativa HOM05D006390 ORTHO05D007899 9.2e-20 100.5 104 52.9
SGA_v2.0_scaffold20G09157 Striga asiatica HOM05D006390 ORTHO05D007899 1.2e-19 100.1 113 49.6
EL10Ac2g03778 Beta vulgaris HOM05D007692 ORTHO05D009696 2.0e-19 99.4 105 55.2
Glyma.06G056100 Glycine max HOM05D007692 ORTHO05D009696 2.0e-19 99.4 110 56.4
ECA240G2866 Erigeron canadensis HOM05D000002 ORTHO05D000001 2.7e-19 99.0 104 51.9
Glyma.17G225900 Glycine max HOM05D007692 ORTHO05D009696 2.7e-19 99.0 107 56.1
Psat6g022960 Pisum sativum HOM05D007692 ORTHO05D009696 2.7e-19 99.0 110 53.6
Phvul.009G082200 Phaseolus vulgaris HOM05D007692 ORTHO05D009696 4.6e-19 98.2 110 56.4
Sc06g0001120 Simmondsia chinensis HOM05D007692 ORTHO05D009696 4.6e-19 98.2 98 57.1
CANSAT25G1329 Cannabis sativa HOM05D007692 ORTHO05D009696 6.0e-19 97.8 110 51.8
Cpa.g.sc126.21 Carica papaya HOM05D007692 ORTHO05D009696 6.0e-19 97.8 107 54.2
Gohir.A05G038600 Gossypium hirsutum HOM05D007692 ORTHO05D009696 1.7e-18 96.3 104 53.8
TPR.G3568 Trifolium pratense HOM05D007692 ORTHO05D009696 1.7e-18 96.3 102 52.9
Gohir.D05G040100 Gossypium hirsutum HOM05D007692 ORTHO05D009696 3.0e-18 95.5 104 54.8
Gorai.009G040500 Gossypium raimondii HOM05D007692 ORTHO05D009696 3.0e-18 95.5 104 54.8
VMungo1309G1304 Vigna mungo HOM05D007692 ORTHO05D009696 3.0e-18 95.5 108 55.6
TWI63G1278 Tripterygium wilfordii HOM05D007692 ORTHO05D009696 3.9e-18 95.1 107 52.3
Os03g0176900 Oryza sativa ssp. japonica HOM05D007692 ORTHO05D009696 8.6e-18 94.0 108 47.2
Medtr3g105090 Medicago truncatula HOM05D007692 ORTHO05D009696 1.1e-17 93.6 102 53.9
CSS0041722 Camellia sinensis var. sinensis HOM05D007692 ORTHO05D009696 1.9e-17 92.8 95 54.7
HanXRQChr03g0065641 Helianthus annuus HOM05D007692 ORTHO05D009696 3.3e-17 92.0 106 50.9
SalBow4G0926 Salvia bowleyana HOM05D007692 ORTHO05D009696 1.6e-16 89.7 99 49.5
Ciclev10010178m.g Citrus clementina HOM05D007692 ORTHO05D009696 2.1e-16 89.4 107 53.3
Oeu003971.1 Olea europaea HOM05D007692 ORTHO05D009696 2.1e-16 89.4 102 52.9
ATR0598G206 Amborella trichopoda HOM05D007692 ORTHO05D009696 2.8e-16 89.0 113 46.0
CDE04G2134 Ceratophyllum demersum HOM05D007692 ORTHO05D009696 4.7e-16 88.2 107 49.5
Phvul.001G038600 Phaseolus vulgaris HOM05D007692 ORTHO05D009696 4.7e-16 88.2 91 54.9
Ah.11g044290 Amaranthus hybridus HOM05D007692 ORTHO05D009696 6.2e-16 87.8 102 51.0
Psat5g030520 Pisum sativum HOM05D007692 ORTHO05D009696 8.1e-16 87.4 89 53.9
THA.LOC104810956 Tarenaya hassleriana HOM05D007692 ORTHO05D009696 3.1e-15 85.5 105 49.5
Lalb_Chr11g0063341 Lupinus albus HOM05D007692 ORTHO05D009696 4.4e-14 81.6 109 45.9
unitig_32.g11527 Utricularia gibba HOM05D007692 ORTHO05D009696 7.5e-14 80.9 102 49.0
A10p18810 Brassica napus HOM05D007692 ORTHO05D009696 1.7e-13 79.7 106 50.9
C09p54830 Brassica napus HOM05D007692 ORTHO05D009696 1.7e-13 79.7 106 50.9
BolC9t58343H Brassica oleracea HOM05D007692 ORTHO05D009696 1.7e-13 79.7 106 50.9
BraA10t43961Z Brassica rapa HOM05D007692 ORTHO05D009696 1.7e-13 79.7 106 50.9
BcaB08g36470 Brassica carinata HOM05D007692 ORTHO05D009696 2.9e-13 79.0 106 50.9
Thhalv10015977m.g Eutrema salsugineum HOM05D007692 ORTHO05D009696 6.4e-13 77.8 107 46.7
Medtr1g015490 Medicago truncatula HOM05D007692 ORTHO05D009696 8.3e-13 77.4 87 54.0
TAR624G1426 Trochodendron aralioides HOM05D000001 ORTHO05D000003 1.9e-12 76.3 76 56.6
CARHR191630 Cardamine hirsuta HOM05D007692 ORTHO05D009696 2.4e-12 75.9 106 44.3
Sp6g23280 Schrenkiella parvula HOM05D007692 ORTHO05D009696 3.0e-10 68.9 100 44.0
AT5G21910 Arabidopsis thaliana HOM05D007692 ORTHO05D009696 3.9e-10 68.6 107 43.0
Carub.0006s1955 Capsella rubella HOM05D007692 ORTHO05D009696 3.9e-10 68.6 107 42.1
Atru.chr7.1844 Acer truncatum HOM05D007692 ORTHO05D009696 6.6e-10 67.8 73 56.2
Duzib150G0238 Durio zibethinus HOM05D007692 ORTHO05D009696 6.6e-10 67.8 149 36.2
Cc08_g01120 Coffea canephora HOM05D007692 ORTHO05D009696 1.5e-09 66.6 101 41.6
Lj1g0020593 Lotus japonicus HOM05D007692 ORTHO05D009696 1.5e-09 66.6 110 41.8
Psat6g004480 Pisum sativum HOM05D007692 ORTHO05D009696 1.5e-09 66.6 70 50.0
Carub.0005s0963 Capsella rubella HOM05D007692 ORTHO05D009696 1.9e-09 66.2 111 39.6
Lalb_Chr14g0366461 Lupinus albus HOM05D007692 ORTHO05D009696 1.8e-07 59.7 69 50.7
Sed0007062 Sechium edule HOM05D007692 ORTHO05D009696 6.8e-07 57.8 51 54.9


User provided reference genes

Program Settings