Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn8g39907 Nelumbo nucifera HOM05D000121 ORTHO05D007423 1.9e-256 888.6 433 100.0
TAR625G0397 Trochodendron aralioides HOM05D000121 ORTHO05D007423 5.4e-139 498.4 321 73.8
Cfa001878 Carpinus fangiana HOM05D000121 ORTHO05D007423 7.6e-109 398.3 319 60.5
Prupe.3G098500 Prunus persica HOM05D000121 ORTHO05D007423 1.9e-104 383.6 322 57.5
CiPaw.01G254800 Carya illinoinensis HOM05D000121 ORTHO05D007423 9.0e-102 374.8 355 53.0
Actinidia00678 Actinidia chinensis HOM05D000121 ORTHO05D007423 2.7e-98 363.2 354 50.3
Manes.11G066800 Manihot esculenta HOM05D000121 ORTHO05D007423 5.1e-97 359.0 321 56.1
Atru.chr10.2415_Atru.chr10.2416 Acer truncatum HOM05D000121 ORTHO05D007423 2.2e-95 353.6 319 53.9
CANSAT56G2614 Cannabis sativa HOM05D000121 ORTHO05D007423 1.2e-93 347.8 358 51.1
Cc04_g05140 Coffea canephora HOM05D000121 ORTHO05D007423 2.6e-93 346.7 323 51.4
Duzib235G1084 Durio zibethinus HOM05D000121 ORTHO05D007423 1.3e-92 344.4 316 53.2
Dinv21413 Davidia involucrata HOM05D000121 ORTHO05D007423 1.7e-92 344.0 284 59.2
Phvul.005G175600 Phaseolus vulgaris HOM05D000121 ORTHO05D007423 2.5e-91 340.1 323 51.7
FvH4_6g28590 Fragaria vesca HOM05D000121 ORTHO05D007423 4.2e-91 339.3 361 48.5
PSO384G0944 Papaver somniferum HOM05D000121 ORTHO05D007423 2.7e-90 336.7 324 54.0
Thecc.06G042000 Theobroma cacao HOM05D000121 ORTHO05D007423 4.7e-90 335.9 316 53.2
Glyma.13G370300 Glycine max HOM05D000121 ORTHO05D007423 6.1e-90 335.5 323 52.3
Lj3g0008200 Lotus japonicus HOM05D000121 ORTHO05D007423 3.9e-89 332.8 321 51.4
Potri.003G182601 Populus trichocarpa HOM05D000121 ORTHO05D007423 1.5e-88 330.9 321 51.4
Aqoxy7G02252 Aquilegia oxysepala HOM05D000121 ORTHO05D007423 2.0e-88 330.5 329 52.3
Sc12g0008290 Simmondsia chinensis HOM05D000121 ORTHO05D007423 3.7e-87 326.2 321 49.5
vmacro19059 Vaccinium macrocarpon HOM05D000121 ORTHO05D007423 1.4e-86 324.3 391 43.7
Gorai.009G123500 Gossypium raimondii HOM05D000121 ORTHO05D007423 6.5e-84 315.5 316 49.1
Psat5g098320 Pisum sativum HOM05D000121 ORTHO05D007423 8.5e-84 315.1 330 49.7
Gohir.D05G119900 Gossypium hirsutum HOM05D000121 ORTHO05D007423 1.1e-83 314.7 316 49.1
TWI18G1091 Tripterygium wilfordii HOM05D000121 ORTHO05D007423 9.7e-80 301.6 323 47.1
MD09G1225000 Malus domestica HOM05D000121 ORTHO05D007423 2.8e-79 300.1 282 55.3
PGR102G2529 Punica granatum HOM05D000121 ORTHO05D007423 3.1e-78 296.6 307 48.2
arahy.Tifrunner.gnm1.ann1.AY4NJ9 Arachis hypogaea HOM05D000121 ORTHO05D007423 2.6e-77 293.5 345 44.6
Rhsim08G0205400 Rhododendron simsii HOM05D000121 ORTHO05D007423 4.5e-77 292.7 315 49.5
RcHm_v2.0_Chr2g0132931 Rosa chinensis HOM05D000121 ORTHO05D007423 1.3e-76 291.2 332 47.3
FAN14G1613 Fragaria x ananassa HOM05D000121 ORTHO05D007423 1.7e-76 290.8 327 47.4
ClCG10G012900 Citrullus lanatus HOM05D000121 ORTHO05D007423 2.9e-76 290.0 361 42.4
Lj9C493G4 Lonicera japonica HOM05D000121 ORTHO05D007423 2.9e-76 290.0 257 54.9
Sed0004285 Sechium edule HOM05D000121 ORTHO05D007423 5.0e-76 289.3 319 45.5
CsaV3_3G032770 Cucumis sativus L. HOM05D000121 ORTHO05D007423 4.2e-75 286.2 360 40.6
Solyc03g117540.4 Solanum lycopersicum HOM05D000121 ORTHO05D007423 7.2e-75 285.4 297 47.1
MELO3C026737.2 Cucumis melo HOM05D000121 ORTHO05D007423 8.0e-74 282.0 361 41.6
Medtr2g105190 Medicago truncatula HOM05D000121 ORTHO05D007423 8.0e-74 282.0 326 48.2
ATR0739G176 Amborella trichopoda HOM05D000121 ORTHO05D007423 8.3e-71 271.9 259 51.4
Peaxi162Scf00553g00540 Petunia axillaris HOM05D000121 ORTHO05D007423 1.1e-70 271.6 296 48.3
HanXRQChr04g0099601 Helianthus annuus HOM05D000121 ORTHO05D007423 1.8e-70 270.8 258 46.9
MSTRG.11184 Avicennia marina HOM05D000121 ORTHO05D007423 3.1e-70 270.0 257 49.4
FAN05G1320 Fragaria x ananassa HOM05D000121 ORTHO05D007423 3.1e-70 270.0 261 52.1
ECA247G2933 Erigeron canadensis HOM05D000121 ORTHO05D007423 1.2e-69 268.1 286 46.2
EL10Ac9g22203 Beta vulgaris HOM05D000121 ORTHO05D007423 2.2e-68 263.8 255 50.6
Lalb_Chr22g0349431 Lupinus albus HOM05D000121 ORTHO05D007423 2.2e-68 263.8 259 50.2
HPP92_015868 Vanilla planifolia HOM05D000121 ORTHO05D007423 4.7e-66 256.1 257 48.2
SalBow7G3127 Salvia bowleyana HOM05D000121 ORTHO05D007423 5.2e-65 252.7 328 40.9
VMungo1080G0885 Vigna mungo HOM05D000121 ORTHO05D007423 2.8e-63 246.9 295 45.1
Zm00001eb374580 Zea mays HOM05D000121 ORTHO05D007423 8.3e-63 245.4 322 41.9
Gohir.A05G119000 Gossypium hirsutum HOM05D000121 ORTHO05D007423 5.0e-60 236.1 237 48.9
Aa31sc61G130 Aethionema arabicum HOM05D000121 ORTHO05D007423 2.5e-59 233.8 334 38.3
CAN.G407.8 Capsicum annuum HOM05D000121 ORTHO05D007423 1.0e-57 228.4 300 44.3
TPR.G19154 Trifolium pratense HOM05D000121 ORTHO05D007423 1.2e-56 224.9 265 47.5
Lsat_1_v5_gn_1_31080 Lactuca sativa HOM05D000121 ORTHO05D007423 6.3e-55 219.2 210 49.5
AL3G44200 Arabidopsis lyrata HOM05D000121 ORTHO05D007423 5.4e-54 216.1 296 40.9
Thhalv10024220m.g Eutrema salsugineum HOM05D000121 ORTHO05D007423 9.2e-54 215.3 296 42.2
Sabra03G0133400 Salix brachista HOM05D000121 ORTHO05D007423 1.2e-53 214.9 267 44.2
A03p51040 Brassica napus HOM05D000121 ORTHO05D007423 2.7e-53 213.8 294 43.2
arahy.Tifrunner.gnm1.ann1.5LV02X Arachis hypogaea HOM05D000121 ORTHO05D007423 3.5e-53 213.4 310 39.4
Sp7g16030 Schrenkiella parvula HOM05D000121 ORTHO05D007423 6.6e-52 209.1 298 41.6
BraA03t14190Z Brassica rapa HOM05D000121 ORTHO05D007423 2.1e-50 204.1 304 41.1
Aqoxy7G02250 Aquilegia oxysepala HOM05D000121 ORTHO05D007423 3.6e-50 203.4 167 61.7
C07p49470 Brassica napus HOM05D000121 ORTHO05D007423 8.0e-50 202.2 297 42.1
AT2G07680 Arabidopsis thaliana HOM05D000121 ORTHO05D007423 1.0e-49 201.8 299 39.8
BolC7t45452H Brassica oleracea HOM05D000121 ORTHO05D007423 2.6e-48 197.2 305 41.3
QL05p035924 Quercus lobata HOM05D000121 ORTHO05D007423 2.4e-46 190.7 151 62.3
Haze_16670 Corylus avellana HOM05D000121 ORTHO05D007423 5.4e-46 189.5 132 66.7
Ah.01g024650 Amaranthus hybridus HOM05D000121 ORTHO05D007423 7.0e-46 189.1 163 55.8
Os06g0184700 Oryza sativa ssp. japonica HOM05D000121 ORTHO05D007423 1.3e-44 184.9 317 34.4
AUR62027001 Chenopodium quinoa HOM05D000121 ORTHO05D007423 6.6e-44 182.6 161 55.3
MBI15_g18249_MAGBIO Magnolia biondii HOM05D000121 ORTHO05D007423 1.4e-41 174.9 155 59.4
Ca_01014_v3 Cicer arietinum L. HOM05D000121 ORTHO05D007423 2.0e-40 171.0 170 51.2
Migut.I00691 Erythranthe guttata HOM05D000121 ORTHO05D007423 3.5e-37 160.2 131 58.8
AUR62030841 Chenopodium quinoa HOM05D000121 ORTHO05D007423 5.1e-36 156.4 151 54.3
Sopen03g036450 Solanum pennellii HOM05D000121 ORTHO05D007423 1.1e-35 155.2 129 55.8
Oeu009804.1 Olea europaea HOM05D000121 ORTHO05D007423 9.5e-35 152.1 119 61.3
GSVIVG01015962001 Vitis vinifera HOM05D000121 ORTHO05D007423 9.5e-35 152.1 90 75.6
DCAR_003926 Daucus carota HOM05D000121 ORTHO05D007423 1.5e-32 144.8 177 44.6
Ciclev10024806m.g Citrus clementina HOM05D000121 ORTHO05D007423 2.0e-32 144.4 99 67.7
Carub.0013s0012 Capsella rubella HOM05D000121 ORTHO05D018186 6.4e-31 139.4 257 34.6
MBI15_g18248_MAGBIO Magnolia biondii HOM05D000121 ORTHO05D018186 8.4e-31 139.0 122 54.9
SGA_v2.0_scaffold37G14700 Striga asiatica HOM05D000121 ORTHO05D007423 3.2e-30 137.1 192 39.1
Eucgr.F03961 Eucalyptus grandis HOM05D000121 ORTHO05D007423 2.3e-28 131.0 90 65.6
COL.COLO4_26706 Corchorus olitorius HOM05D000121 ORTHO05D007423 4.3e-27 126.7 167 43.1
Actinidia11263 Actinidia chinensis HOM05D000121 ORTHO05D007423 1.8e-25 121.3 130 46.9
AagrBONN_evm.TU.Sc2ySwM_369.271 Anthoceros agrestis HOM05D000121 ORTHO05D007423 2.4e-25 120.9 197 30.5
Migut.I00690 Erythranthe guttata HOM05D000121 ORTHO05D018186 8.9e-25 119.0 158 37.3
CSS0006592 Camellia sinensis var. sinensis HOM05D000121 ORTHO05D018186 6.4e-23 112.8 185 37.8
Sopen03g036440 Solanum pennellii HOM05D000121 ORTHO05D018186 6.4e-23 112.8 128 42.2
VMungo0647G2187 Vigna mungo HOM05D003335 ORTHO05D003853 6.4e-23 112.8 207 35.3
CSS0023899 Camellia sinensis var. sinensis HOM05D000121 ORTHO05D007423 3.2e-22 110.5 81 61.7
CSS0047540 Camellia sinensis var. sinensis HOM05D000121 ORTHO05D007423 9.3e-22 109.0 81 60.5
Mapoly0011s0164 Marchantia polymorpha HOM05D000121 ORTHO05D007423 1.3e-18 98.6 144 38.2
CBR_g25873 Chara braunii HOM05D000121 ORTHO05D007423 3.6e-18 97.1 202 31.7
Nitab4.5_0010868g0020 Nicotiana tabacum HOM05D000121 ORTHO05D007423 1.4e-17 95.1 316 27.8
CDE02G3275 Ceratophyllum demersum HOM05D000121 ORTHO05D007423 2.4e-17 94.4 78 57.7
Pp3c22_9930 Physcomitrium patens HOM05D000121 ORTHO05D007423 4.4e-16 90.1 127 37.8
CARHR104110 Cardamine hirsuta HOM05D000121 ORTHO05D007423 9.9e-16 89.0 81 49.4
Actinidia17457 Actinidia chinensis HOM05D004408 ORTHO05D005486 1.1e-14 85.5 61 57.4
Cre14.g618600 Chlamydomonas reinhardtii HOM05D000121 ORTHO05D007423 7.9e-13 79.3 102 40.2
CARHR104100 Cardamine hirsuta HOM05D000121 ORTHO05D018186 3.3e-11 73.9 130 38.5
TPR.G26233 Trifolium pratense HOM05D000121 ORTHO05D001726 8.1e-10 69.3 156 27.6
Eucgr.E02476 Eucalyptus grandis HOM05D000121 ORTHO05D001726 2.6e-08 64.3 306 24.5
MD06G1064200 Malus domestica HOM05D000002 ORTHO05D000001 4.5e-08 63.5 82 37.8
MD07G1013900 Malus domestica HOM05D000002 ORTHO05D000001 1.3e-07 62.0 82 37.8
Nn5g31359 Nelumbo nucifera HOM05D005785 ORTHO05D007962 1.3e-07 62.0 37 78.4
PSO541G3061 Papaver somniferum HOM05D000121 ORTHO05D001726 1.7e-07 61.6 105 30.5
PSO675G3298 Papaver somniferum HOM05D000121 ORTHO05D001726 1.7e-07 61.6 105 30.5
QL05p053832 Quercus lobata HOM05D000121 ORTHO05D001726 1.7e-07 61.6 115 32.2
Medtr2g019020 Medicago truncatula HOM05D000121 ORTHO05D001726 3.8e-07 60.5 158 25.9
QL02p002557 Quercus lobata HOM05D000002 ORTHO05D000001 3.8e-07 60.5 82 39.0
QL12p040299 Quercus lobata HOM05D000002 ORTHO05D000001 3.8e-07 60.5 82 39.0
CSS0002432 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 4.9e-07 60.1 86 41.9
VMungo0328G0001 Vigna mungo HOM05D002398 ORTHO05D003853 4.9e-07 60.1 75 50.7
CSS0020833 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 8.4e-07 59.3 83 37.3
Lj2C326G4 Lonicera japonica HOM05D000121 ORTHO05D001726 8.4e-07 59.3 99 34.3
Nn3g18178 Nelumbo nucifera HOM05D000274 ORTHO05D007831 8.4e-07 59.3 84 45.2
Gorai.008G047500 Gossypium raimondii HOM05D000121 ORTHO05D001726 1.1e-06 58.9 104 29.8
Pp3c15_19920 Physcomitrium patens HOM05D000121 ORTHO05D001726 1.1e-06 58.9 103 32.0
Ca_00526_v3 Cicer arietinum L. HOM05D000121 ORTHO05D001726 1.4e-06 58.5 158 25.9
DCAR_004808 Daucus carota HOM05D000121 ORTHO05D001726 1.4e-06 58.5 111 30.6
MBI18_g11287_MAGBIO Magnolia biondii HOM05D000121 ORTHO05D001726 1.4e-06 58.5 97 34.0
EL10Ac6g13223 Beta vulgaris HOM05D000121 ORTHO05D001726 1.9e-06 58.2 126 31.7
VMungo1215G3020 Vigna mungo HOM05D000002 ORTHO05D000001 1.9e-06 58.2 81 38.3
Gohir.A12G046000 Gossypium hirsutum HOM05D000121 ORTHO05D001726 2.4e-06 57.8 104 29.8
TWI09G1328 Tripterygium wilfordii HOM05D000121 ORTHO05D001726 2.4e-06 57.8 104 31.7
VMungo1383G2495 Vigna mungo HOM05D002560 ORTHO05D003782 2.4e-06 57.8 81 38.3
Cpa.g.sc17.71 Carica papaya HOM05D000121 ORTHO05D001726 3.2e-06 57.4 99 32.3
Glyma.15G092400 Glycine max HOM05D000121 ORTHO05D001726 3.2e-06 57.4 100 31.0
Lj6g0006627 Lotus japonicus HOM05D000121 ORTHO05D001726 3.2e-06 57.4 156 26.3
CiPaw.09G116800 Carya illinoinensis HOM05D000121 ORTHO05D001726 4.2e-06 57.0 104 29.8
Lalb_Chr20g0117791 Lupinus albus HOM05D000121 ORTHO05D001726 4.2e-06 57.0 97 32.0
PSO675G7662 Papaver somniferum HOM05D000121 ORTHO05D001726 4.2e-06 57.0 100 29.0
Peaxi162Scf00061g00226 Petunia axillaris HOM05D000121 ORTHO05D001726 4.2e-06 57.0 99 29.3
Sabra04G0020300 Salix brachista HOM05D000121 ORTHO05D001726 4.2e-06 57.0 117 29.9
Cfa024670 Carpinus fangiana HOM05D000121 ORTHO05D000102 5.5e-06 56.6 139 29.5
FvH4_3g09710 Fragaria vesca HOM05D000121 ORTHO05D001726 5.5e-06 56.6 115 30.4
FAN11G2907 Fragaria x ananassa HOM05D000121 ORTHO05D001726 5.5e-06 56.6 115 30.4
FAN25G0128 Fragaria x ananassa HOM05D000121 ORTHO05D001726 5.5e-06 56.6 115 30.4
Lj1A1166T77 Lonicera japonica HOM05D000121 ORTHO05D001726 5.5e-06 56.6 104 29.8
Medtr3g011820 Medicago truncatula HOM05D000121 ORTHO05D001726 5.5e-06 56.6 104 30.8
Psat5g224760 Pisum sativum HOM05D000121 ORTHO05D001726 5.5e-06 56.6 99 32.3
RcHm_v2.0_Chr5g0015441 Rosa chinensis HOM05D000121 ORTHO05D001726 5.5e-06 56.6 115 30.4
CSS0049066 Camellia sinensis var. sinensis HOM05D011276 ORTHO05D013043 7.1e-06 56.2 86 33.7
Gohir.D12G045100 Gossypium hirsutum HOM05D000121 ORTHO05D001726 7.1e-06 56.2 115 29.6
Prupe.4G088600 Prunus persica HOM05D000121 ORTHO05D001726 7.1e-06 56.2 131 29.0
HPP92_015859 Vanilla planifolia HOM05D000121 ORTHO05D018186 7.1e-06 56.2 60 45.0
ATR1098G007 Amborella trichopoda HOM05D000121 ORTHO05D001726 9.3e-06 55.8 115 29.6
arahy.Tifrunner.gnm1.ann1.BY56TA Arachis hypogaea HOM05D000121 ORTHO05D001726 9.3e-06 55.8 99 30.3
arahy.Tifrunner.gnm1.ann1.CFA80Z Arachis hypogaea HOM05D000121 ORTHO05D001726 9.3e-06 55.8 99 30.3
Dinv15904 Davidia involucrata HOM05D000121 ORTHO05D001726 9.3e-06 55.8 115 27.8
Psat1g188520 Pisum sativum HOM05D000121 ORTHO05D001726 9.3e-06 55.8 99 30.3
TPR.G30399 Trifolium pratense HOM05D000121 ORTHO05D001726 9.3e-06 55.8 104 31.7
VMungo1080G1597 Vigna mungo HOM05D000121 ORTHO05D001726 9.3e-06 55.8 104 31.7


User provided reference genes

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