Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn8g39893 Nelumbo nucifera HOM05D005968 ORTHO05D007158 2.7e-188 661.8 311 100.0
Glyma.02G204100 Glycine max HOM05D005968 ORTHO05D007158 2.4e-173 612.1 311 89.7
Dinv41378 Davidia involucrata HOM05D005968 ORTHO05D007158 7.0e-173 610.5 311 90.0
Nn2g12378 Nelumbo nucifera HOM05D005968 ORTHO05D007158 1.2e-172 609.8 311 90.7
Lj4g0027447 Lotus japonicus HOM05D005968 ORTHO05D007158 2.7e-172 608.6 311 89.7
CSS0021374 Camellia sinensis var. sinensis HOM05D005968 ORTHO05D007158 3.5e-172 608.2 311 90.0
Glyma.17G073700 Glycine max HOM05D005968 ORTHO05D007158 1.0e-171 606.7 311 89.4
Gorai.004G291800 Gossypium raimondii HOM05D005968 ORTHO05D007158 1.7e-171 605.9 310 89.0
CiPaw.15G168400 Carya illinoinensis HOM05D005968 ORTHO05D007158 3.0e-171 605.1 308 89.3
Thecc.09G030600 Theobroma cacao HOM05D005968 ORTHO05D007158 3.9e-171 604.7 307 89.3
Gohir.D08G273400 Gossypium hirsutum HOM05D005968 ORTHO05D007158 1.5e-170 602.8 310 88.4
Duzib187G1838 Durio zibethinus HOM05D005968 ORTHO05D007158 2.5e-170 602.1 307 88.6
Prupe.7G263000 Prunus persica HOM05D005968 ORTHO05D007158 3.6e-169 598.2 308 89.0
Manes.14G143600 Manihot esculenta HOM05D005968 ORTHO05D007158 6.2e-169 597.4 305 89.8
Dinv42854 Davidia involucrata HOM05D005968 ORTHO05D007158 1.8e-168 595.9 307 89.3
Atru.chr7.47_Atru.chr7.48 Acer truncatum HOM05D005968 ORTHO05D007158 1.2e-167 593.2 305 88.9
CANSAT11G2689 Cannabis sativa HOM05D005968 ORTHO05D007158 1.2e-167 593.2 308 86.7
Potri.006G184300 Populus trichocarpa HOM05D005968 ORTHO05D007158 1.2e-167 593.2 305 88.9
Hma1.2p1_0222F.1_g093590 Hydrangea macrophylla HOM05D005968 ORTHO05D007158 2.6e-167 592.0 310 88.7
Gohir.A08G251800 Gossypium hirsutum HOM05D005968 ORTHO05D007158 5.8e-167 590.9 305 88.9
ECA236G4418 Erigeron canadensis HOM05D005968 ORTHO05D007158 3.7e-166 588.2 305 88.2
DCAR_019393 Daucus carota HOM05D005968 ORTHO05D007158 4.9e-166 587.8 311 86.5
CiPaw.16G111000 Carya illinoinensis HOM05D005968 ORTHO05D007158 1.1e-165 586.6 302 87.7
PSO561G0082 Papaver somniferum HOM05D005968 ORTHO05D007158 1.4e-165 586.3 305 88.5
Aqoxy2G01962_Aqoxy2G01963 Aquilegia oxysepala HOM05D005968 ORTHO05D007158 1.9e-165 585.9 312 87.2
Ciclev10008980m.g Citrus clementina HOM05D005968 ORTHO05D007158 1.9e-165 585.9 305 88.2
PSO111G0029 Papaver somniferum HOM05D005968 ORTHO05D007158 2.4e-165 585.5 305 88.5
PGSC0003DMG400011184 Solanum tuberosum HOM05D005968 ORTHO05D007158 4.1e-165 584.7 311 86.2
Eucgr.C02493 Eucalyptus grandis HOM05D005968 ORTHO05D007158 3.5e-164 581.6 311 85.5
Migut.K00326 Erythranthe guttata HOM05D005968 ORTHO05D007158 4.6e-164 581.3 305 86.6
THA.LOC104803560 Tarenaya hassleriana HOM05D005968 ORTHO05D007158 4.6e-164 581.3 307 86.6
EL10Ac8g18668 Beta vulgaris HOM05D005968 ORTHO05D007158 1.3e-163 579.7 311 84.9
QL02p093270 Quercus lobata HOM05D005968 ORTHO05D007158 8.6e-163 577.0 308 86.0
Potri.018G106700 Populus trichocarpa HOM05D005968 ORTHO05D007158 1.1e-162 576.6 306 85.3
Sed0018428 Sechium edule HOM05D005968 ORTHO05D007158 2.5e-162 575.5 308 85.1
arahy.Tifrunner.gnm1.ann1.D6JQQQ Arachis hypogaea HOM05D005968 ORTHO05D007158 4.3e-162 574.7 311 85.9
Carub.0007s0964 Capsella rubella HOM05D005968 ORTHO05D007158 5.6e-162 574.3 314 83.1
Thhalv10025727m.g Eutrema salsugineum HOM05D005968 ORTHO05D007158 7.3e-162 573.9 303 85.5
HanXRQChr09g0245781 Helianthus annuus HOM05D005968 ORTHO05D007158 7.3e-162 573.9 311 85.9
FvH4_1g00920 Fragaria vesca HOM05D005968 ORTHO05D007158 1.2e-161 573.2 307 86.0
AL7G21190 Arabidopsis lyrata HOM05D005968 ORTHO05D007158 2.1e-161 572.4 303 84.2
TAR626G1902 Trochodendron aralioides HOM05D005968 ORTHO05D007158 2.8e-161 572.0 301 88.0
AT4G30900 Arabidopsis thaliana HOM05D005968 ORTHO05D007158 1.4e-160 569.7 317 81.7
SalBow1G6433 Salvia bowleyana HOM05D005968 ORTHO05D007158 1.4e-160 569.7 311 84.9
CARHR238800 Cardamine hirsuta HOM05D005968 ORTHO05D007158 4.0e-160 568.2 302 84.8
Sp7g28770 Schrenkiella parvula HOM05D005968 ORTHO05D007158 4.0e-160 568.2 314 82.2
Ca_21128_v3 Cicer arietinum L. HOM05D005968 ORTHO05D007158 1.4e-157 559.7 311 83.9
BolC1t00793H Brassica oleracea HOM05D005968 ORTHO05D007158 4.1e-157 558.1 312 82.4
FAN23G3092 Fragaria x ananassa HOM05D005968 ORTHO05D007158 5.4e-157 557.8 307 84.4
BcaC09g51877 Brassica carinata HOM05D005968 ORTHO05D007158 9.2e-157 557.0 312 82.1
A01p07280 Brassica napus HOM05D005968 ORTHO05D007158 9.2e-157 557.0 312 82.1
BraA01t00677Z Brassica rapa HOM05D005968 ORTHO05D007158 9.2e-157 557.0 312 82.1
BcaNung03430 Brassica carinata HOM05D005968 ORTHO05D007158 1.6e-156 556.2 303 82.8
C01p08040 Brassica napus HOM05D005968 ORTHO05D007158 7.8e-156 553.9 312 81.7
MD15G1144700 Malus domestica HOM05D005968 ORTHO05D007158 1.0e-155 553.5 311 82.6
Zm00001eb086780 Zea mays HOM05D005968 ORTHO05D007158 1.0e-155 553.5 305 83.0
Lsat_1_v5_gn_8_63401 Lactuca sativa HOM05D005968 ORTHO05D007158 5.1e-155 551.2 309 83.8
VMungo1215G2113 Vigna mungo HOM05D005968 ORTHO05D007158 1.5e-154 549.7 311 81.7
Zm00001eb420110 Zea mays HOM05D005968 ORTHO05D007158 1.5e-154 549.7 305 82.0
Psat0s2403g0360 Pisum sativum HOM05D005968 ORTHO05D007158 3.3e-154 548.5 301 84.4
MD02G1007400 Malus domestica HOM05D005968 ORTHO05D007158 7.3e-154 547.4 305 83.0
Lj7A459G65 Lonicera japonica HOM05D005968 ORTHO05D007158 2.1e-153 545.8 308 83.1
DCAR_017911 Daucus carota HOM05D005968 ORTHO05D007158 1.8e-152 542.7 317 78.9
Cfa020826 Carpinus fangiana HOM05D002374 ORTHO05D003594 2.6e-151 538.9 292 85.3
Peaxi162Scf00401g00718 Petunia axillaris HOM05D005968 ORTHO05D007158 1.1e-149 533.5 311 80.7
FAN26G1763 Fragaria x ananassa HOM05D005968 ORTHO05D007158 1.9e-149 532.7 307 81.4
Sabra06G0140100 Salix brachista HOM05D005968 ORTHO05D007158 5.1e-147 524.6 406 65.5
SEGI_19747 Sequoiadendron giganteum HOM05D005968 ORTHO05D007158 1.1e-146 523.5 305 78.0
Phvul.003G156000 Phaseolus vulgaris HOM05D005968 ORTHO05D007158 2.1e-145 519.2 280 85.4
Sabra18G0090900 Salix brachista HOM05D005968 ORTHO05D007158 1.4e-144 516.5 357 69.7
Actinidia38673 Actinidia chinensis HOM05D005968 ORTHO05D007158 2.4e-144 515.8 271 87.5
COL.COLO4_18810 Corchorus olitorius HOM05D000238 ORTHO05D007158 1.2e-140 503.4 293 79.9
PGR102G1528 Punica granatum HOM05D005968 ORTHO05D007158 1.6e-140 503.1 263 88.6
unitig_52.g17565 Utricularia gibba HOM05D005968 ORTHO05D007158 1.9e-133 479.6 327 69.1
ATR0739G020 Amborella trichopoda HOM05D005968 ORTHO05D007158 1.6e-132 476.5 306 73.9
AUR62029822 Chenopodium quinoa HOM05D005968 ORTHO05D007158 4.6e-132 474.9 264 83.0
CsaV3_1G028970 Cucumis sativus L. HOM05D005968 ORTHO05D007158 3.1e-128 462.2 308 71.4
TWI34G0179 Tripterygium wilfordii HOM05D005968 ORTHO05D007158 1.2e-127 460.3 305 72.5
AUR62006466 Chenopodium quinoa HOM05D005968 ORTHO05D007158 5.8e-127 458.0 257 82.5
Mapoly0088s0077 Marchantia polymorpha HOM05D005968 ORTHO05D007158 1.0e-123 447.2 302 65.6
SGA_v2.0_scaffold347G49545 Striga asiatica HOM05D005968 ORTHO05D007158 3.8e-118 428.7 342 63.5
Nitab4.5_0003623g0020 Nicotiana tabacum HOM05D005968 ORTHO05D007158 9.1e-104 380.9 311 62.1
Nitab4.5_0009876g0020 Nicotiana tabacum HOM05D005968 ORTHO05D007158 7.2e-101 371.3 188 89.4
Lsat_1_v5_gn_7_66900 Lactuca sativa HOM05D005968 ORTHO05D007158 3.1e-96 355.9 273 65.9
Lalb_Chr12g0198711 Lupinus albus HOM05D005968 ORTHO05D007158 5.2e-91 338.6 168 89.9
Oeu038140.1 Olea europaea HOM05D005968 ORTHO05D007158 5.2e-91 338.6 165 92.1
TPR.G24830 Trifolium pratense HOM05D005968 ORTHO05D007158 8.8e-91 337.8 168 89.3
CiPaw.15G168700 Carya illinoinensis HOM05D005968 ORTHO05D007158 5.7e-90 335.1 186 84.4
Lsat_1_v5_gn_4_18721 Lactuca sativa HOM05D005968 ORTHO05D007158 5.7e-90 335.1 183 83.6
GSVIVG01023606001 Vitis vinifera HOM05D005968 ORTHO05D007158 9.7e-90 334.3 168 89.3
Cc06_g14950 Coffea canephora HOM05D005968 ORTHO05D007158 1.3e-89 334.0 168 89.3
Medtr4g130830 Medicago truncatula HOM05D005968 ORTHO05D007158 4.1e-88 328.9 168 87.5
CAN.G160.61 Capsicum annuum HOM05D005968 ORTHO05D007158 9.1e-88 327.8 161 90.7
MSTRG.26272 Avicennia marina HOM05D005968 ORTHO05D007158 1.2e-87 327.4 165 87.9
Cpa.g.sc46.157 Carica papaya HOM05D005968 ORTHO05D007158 1.2e-87 327.4 162 89.5
Eucgr.C02540 Eucalyptus grandis HOM05D005968 ORTHO05D007158 3.5e-87 325.9 168 86.3
RcHm_v2.0_Chr2g0085611 Rosa chinensis HOM05D005968 ORTHO05D007158 1.3e-86 323.9 165 86.7
Sc17g0006690 Simmondsia chinensis HOM05D005968 ORTHO05D007158 6.5e-86 321.6 160 91.9
Sopen07g001720 Solanum pennellii HOM05D005968 ORTHO05D007158 6.5e-86 321.6 161 88.8
FAN28G0447 Fragaria x ananassa HOM05D005968 ORTHO05D007158 7.2e-85 318.2 164 86.0
AagrBONN_evm.TU.Sc2ySwM_362.192 Anthoceros agrestis HOM05D005968 ORTHO05D007158 5.3e-80 302.0 244 56.1
vmacro06082 Vaccinium macrocarpon HOM05D005968 ORTHO05D007158 2.0e-79 300.1 182 76.4
Haze_19205 Corylus avellana HOM05D005968 ORTHO05D007158 8.3e-73 278.1 141 87.9
GSVIVG01023605001 Vitis vinifera HOM05D005968 ORTHO05D007158 1.1e-61 241.1 123 91.1
Lalb_Chr12g0198701 Lupinus albus HOM05D005968 ORTHO05D007158 4.7e-60 235.7 123 87.8
TPR.G24874 Trifolium pratense HOM05D005968 ORTHO05D007158 8.0e-60 235.0 123 86.2
ClCG06G012410 Citrullus lanatus HOM05D005968 ORTHO05D007158 6.8e-59 231.9 123 86.2
MELO3C010224.2 Cucumis melo HOM05D005968 ORTHO05D007158 6.8e-59 231.9 123 86.2
Medtr4g130840 Medicago truncatula HOM05D005968 ORTHO05D007158 8.9e-59 231.5 123 84.6
Dinv43246 Davidia involucrata HOM05D005968 ORTHO05D007158 4.4e-58 229.2 122 88.5
RhsimUnG0158300 Rhododendron simsii HOM05D005968 ORTHO05D001263 5.8e-58 228.8 122 82.8
Cc06_g14960 Coffea canephora HOM05D005968 ORTHO05D007158 3.7e-57 226.1 123 85.4
Sopen07g001730 Solanum pennellii HOM05D005968 ORTHO05D007158 5.4e-56 222.2 123 84.6
Solyc07g005620.2 Solanum lycopersicum HOM05D005968 ORTHO05D007158 1.2e-55 221.1 123 83.7
RcHm_v2.0_Chr2g0085621 Rosa chinensis HOM05D005968 ORTHO05D007158 2.0e-55 220.3 122 82.8
TAR636G1721 Trochodendron aralioides HOM05D005968 ORTHO05D007158 6.0e-55 218.8 102 96.1
Oeu038141.1 Olea europaea HOM05D005968 ORTHO05D007158 1.0e-54 218.0 123 82.1
Aa31LG2G19470 Aethionema arabicum HOM05D005968 ORTHO05D007158 1.9e-53 213.8 117 81.2
Cpa.g.sc46.156 Carica papaya HOM05D005968 ORTHO05D007158 7.3e-53 211.8 143 73.4
Os05g0279600 Oryza sativa ssp. japonica HOM05D005968 ORTHO05D007158 6.2e-52 208.8 124 76.6
HPP92_004698 Vanilla planifolia HOM05D005968 ORTHO05D007158 3.1e-51 206.5 124 79.0
HPP92_004697 Vanilla planifolia HOM05D005968 ORTHO05D007158 1.5e-50 204.1 101 88.1
CDE04G1812 Ceratophyllum demersum HOM05D005968 ORTHO05D007158 1.6e-36 157.5 89 76.4
arahy.Tifrunner.gnm1.ann1.HW7BNQ Arachis hypogaea HOM05D005968 ORTHO05D007158 8.4e-33 145.2 69 94.2
arahy.Tifrunner.gnm1.ann1.4WLG0J Arachis hypogaea HOM05D005968 ORTHO05D007158 6.0e-31 139.0 254 35.8
TAR636G0142 Trochodendron aralioides HOM05D002374 ORTHO05D003594 3.0e-30 136.7 71 88.7
Lsat_1_v5_gn_4_18741 Lactuca sativa HOM05D005968 ORTHO05D007158 1.1e-27 128.3 79 75.9
Nitab4.5_0006121g0010 Nicotiana tabacum HOM05D005968 ORTHO05D007158 1.4e-27 127.9 66 87.9
Eucgr.C02541 Eucalyptus grandis HOM05D005968 ORTHO05D007158 8.7e-22 108.6 71 73.2
SHI23672 Sapria himalayana HOM05D005968 ORTHO05D007158 7.6e-18 95.5 66 66.7
arahy.Tifrunner.gnm1.ann1.QXT71M Arachis hypogaea HOM05D005968 ORTHO05D007158 1.9e-16 90.9 46 87.0
arahy.Tifrunner.gnm1.ann1.VCSM30 Arachis hypogaea HOM05D005968 ORTHO05D007158 3.5e-15 86.7 47 80.9
arahy.Tifrunner.gnm1.ann1.HGKJ8P Arachis hypogaea HOM05D005968 ORTHO05D007158 6.2e-12 75.9 40 82.5
Oeu038782.2 Olea europaea HOM05D005968 ORTHO05D007158 1.2e-10 71.6 56 64.3
Haze_19213 Corylus avellana HOM05D000344 ORTHO05D005296 8.4e-09 65.5 34 85.3


User provided reference genes

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