Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn8g39722 Nelumbo nucifera HOM05D004589 ORTHO05D005848 0.0e+00 2326.6 1181 100.0
Nn2g12251 Nelumbo nucifera HOM05D004589 ORTHO05D005848 0.0e+00 2056.6 1205 86.5
Dinv03411 Davidia involucrata HOM05D004589 ORTHO05D005848 0.0e+00 1919.1 1206 80.8
Aqoxy7G03529 Aquilegia oxysepala HOM05D004589 ORTHO05D005848 0.0e+00 1892.5 1206 79.5
Actinidia23085 Actinidia chinensis HOM05D004589 ORTHO05D005848 0.0e+00 1857.8 1209 78.2
CSS0038938 Camellia sinensis var. sinensis HOM05D004589 ORTHO05D005848 0.0e+00 1852.0 1205 78.0
Haze_21457 Corylus avellana HOM05D004589 ORTHO05D005848 0.0e+00 1843.9 1207 77.5
PSO210G3160 Papaver somniferum HOM05D004589 ORTHO05D005848 0.0e+00 1842.4 1211 76.6
Cfa013100 Carpinus fangiana HOM05D004589 ORTHO05D005848 0.0e+00 1841.2 1207 77.2
Ciclev10007276m.g Citrus clementina HOM05D004589 ORTHO05D005848 0.0e+00 1825.4 1208 77.5
Thecc.09G019500 Theobroma cacao HOM05D004589 ORTHO05D005848 0.0e+00 1825.4 1206 76.9
Duzib150G1268 Durio zibethinus HOM05D004589 ORTHO05D005848 0.0e+00 1818.9 1205 76.4
TWI63G0229 Tripterygium wilfordii HOM05D004589 ORTHO05D005848 0.0e+00 1818.5 1203 76.1
COL.COLO4_18916 Corchorus olitorius HOM05D004589 ORTHO05D005848 0.0e+00 1812.7 1205 76.3
QL02p020149 Quercus lobata HOM05D004589 ORTHO05D005848 0.0e+00 1792.7 1296 71.1
RcHm_v2.0_Chr6g0297201 Rosa chinensis HOM05D004589 ORTHO05D005848 0.0e+00 1791.5 1206 75.1
Lj8A732G29 Lonicera japonica HOM05D004589 ORTHO05D005848 0.0e+00 1784.2 1291 71.6
FvH4_2g28290 Fragaria vesca HOM05D004589 ORTHO05D005848 0.0e+00 1783.1 1206 74.5
Oeu056766.2 Olea europaea HOM05D004589 ORTHO05D005848 0.0e+00 1783.1 1205 74.9
MD15G1131100 Malus domestica HOM05D004589 ORTHO05D005848 0.0e+00 1781.9 1206 74.7
Cc08_g00190 Coffea canephora HOM05D004589 ORTHO05D005848 0.0e+00 1772.7 1207 74.2
FAN24G2656 Fragaria x ananassa HOM05D004589 ORTHO05D005848 0.0e+00 1772.3 1222 73.4
FAN15G2875 Fragaria x ananassa HOM05D004589 ORTHO05D005848 0.0e+00 1770.7 1222 73.6
RhsimUnG0052600 Rhododendron simsii HOM05D004589 ORTHO05D005848 0.0e+00 1770.4 1293 71.9
RhsimUnG0165300 Rhododendron simsii HOM05D004589 ORTHO05D005848 0.0e+00 1770.4 1293 71.9
Glyma.14G112200 Glycine max HOM05D004589 ORTHO05D005848 0.0e+00 1767.3 1205 74.0
Glyma.17G215700 Glycine max HOM05D004589 ORTHO05D005848 0.0e+00 1767.3 1205 74.2
Potri.018G022500 Populus trichocarpa HOM05D004589 ORTHO05D005848 0.0e+00 1766.1 1205 74.4
MELO3C016987.2 Cucumis melo HOM05D004589 ORTHO05D005848 0.0e+00 1763.4 1206 73.9
FAN27G1181 Fragaria x ananassa HOM05D004589 ORTHO05D005848 0.0e+00 1762.7 1222 73.1
Gohir.A07G030400 Gossypium hirsutum HOM05D004589 ORTHO05D005848 0.0e+00 1762.3 1205 74.2
Gorai.001G035900 Gossypium raimondii HOM05D004589 ORTHO05D005848 0.0e+00 1762.3 1205 74.4
Lj5g0022357 Lotus japonicus HOM05D004589 ORTHO05D005848 0.0e+00 1762.3 1205 73.9
VMungo0647G1846 Vigna mungo HOM05D004589 ORTHO05D005848 0.0e+00 1758.4 1205 73.6
Eucgr.C02726 Eucalyptus grandis HOM05D004589 ORTHO05D005848 0.0e+00 1756.9 1205 73.4
PGR044G0530 Punica granatum HOM05D004589 ORTHO05D005848 0.0e+00 1756.9 1205 73.9
ClCG05G016580 Citrullus lanatus HOM05D004589 ORTHO05D005848 0.0e+00 1755.3 1214 73.4
MSTRG.1735 Avicennia marina HOM05D004589 ORTHO05D005848 0.0e+00 1754.2 1202 73.0
Phvul.001G047300 Phaseolus vulgaris HOM05D004589 ORTHO05D005848 0.0e+00 1754.2 1205 73.5
Sed0004204 Sechium edule HOM05D004589 ORTHO05D005848 0.0e+00 1751.9 1207 73.4
Nitab4.5_0002503g0050 Nicotiana tabacum HOM05D004589 ORTHO05D005848 0.0e+00 1746.5 1220 73.7
Lalb_Chr11g0075481 Lupinus albus HOM05D004589 ORTHO05D005848 0.0e+00 1743.8 1205 73.4
Potri.006G259500 Populus trichocarpa HOM05D004589 ORTHO05D005848 0.0e+00 1740.3 1205 74.0
Ca_13043_v3 Cicer arietinum L. HOM05D004589 ORTHO05D005848 0.0e+00 1739.2 1205 73.9
Sc23g0006530 Simmondsia chinensis HOM05D004589 ORTHO05D005848 0.0e+00 1739.2 1203 73.0
ATR0629G049 Amborella trichopoda HOM05D004589 ORTHO05D005848 0.0e+00 1735.7 1216 72.3
THA.LOC104799036 Tarenaya hassleriana HOM05D004589 ORTHO05D005848 0.0e+00 1735.7 1210 73.4
CANSAT11G1771 Cannabis sativa HOM05D004589 ORTHO05D005848 0.0e+00 1727.6 1199 73.2
CAN.G199.72 Capsicum annuum HOM05D004589 ORTHO05D005848 0.0e+00 1723.8 1202 73.5
Medtr1g012980 Medicago truncatula HOM05D004589 ORTHO05D005848 0.0e+00 1723.4 1205 72.7
Carub.0006s0955 Capsella rubella HOM05D004589 ORTHO05D005848 0.0e+00 1722.2 1202 73.3
AUR62012448 Chenopodium quinoa HOM05D004589 ORTHO05D005848 0.0e+00 1720.3 1204 72.3
AL6G21660 Arabidopsis lyrata HOM05D004589 ORTHO05D005848 0.0e+00 1719.1 1203 73.1
Solyc06g065840.3 Solanum lycopersicum HOM05D004589 ORTHO05D005848 0.0e+00 1718.0 1202 73.0
AT5G11040 Arabidopsis thaliana HOM05D004589 ORTHO05D005848 0.0e+00 1717.2 1203 72.9
Ah.16g104820 Amaranthus hybridus HOM05D004589 ORTHO05D005848 0.0e+00 1716.8 1204 72.3
arahy.Tifrunner.gnm1.ann1.JQP3NY Arachis hypogaea HOM05D004589 ORTHO05D005848 0.0e+00 1716.8 1201 72.5
Sopen06g024330 Solanum pennellii HOM05D004589 ORTHO05D005848 0.0e+00 1716.8 1202 73.1
Sp6g32450 Schrenkiella parvula HOM05D004589 ORTHO05D005848 0.0e+00 1716.0 1204 73.0
arahy.Tifrunner.gnm1.ann1.PKKG09 Arachis hypogaea HOM05D004589 ORTHO05D005848 0.0e+00 1715.3 1201 72.6
Psat6g028520 Pisum sativum HOM05D004589 ORTHO05D005848 0.0e+00 1715.3 1205 72.1
C09p65810 Brassica napus HOM05D004589 ORTHO05D005848 0.0e+00 1714.5 1204 73.2
A10p26640 Brassica napus HOM05D004589 ORTHO05D005848 0.0e+00 1713.7 1204 73.0
BolC9t59402H Brassica oleracea HOM05D004589 ORTHO05D005848 0.0e+00 1713.7 1204 73.1
BraA10t44722Z Brassica rapa HOM05D004589 ORTHO05D005848 0.0e+00 1713.7 1204 73.0
ECA246G2532 Erigeron canadensis HOM05D004589 ORTHO05D005848 0.0e+00 1713.4 1204 72.4
Thhalv10012483m.g Eutrema salsugineum HOM05D004589 ORTHO05D005848 0.0e+00 1713.4 1204 73.2
EL10Ac2g04152 Beta vulgaris HOM05D004589 ORTHO05D005848 0.0e+00 1712.2 1202 71.8
vmacro22576 Vaccinium macrocarpon HOM05D004589 ORTHO05D005848 0.0e+00 1711.0 1349 67.9
AUR62031571 Chenopodium quinoa HOM05D004589 ORTHO05D005848 0.0e+00 1710.3 1204 72.1
Peaxi162Scf00430g00220 Petunia axillaris HOM05D004589 ORTHO05D005848 0.0e+00 1710.3 1202 73.0
CiPaw.08G008300 Carya illinoinensis HOM05D004589 ORTHO05D005848 0.0e+00 1708.7 1133 76.6
Migut.E01823 Erythranthe guttata HOM05D004589 ORTHO05D005848 0.0e+00 1708.0 1203 71.6
Aa31LG3G16090 Aethionema arabicum HOM05D004589 ORTHO05D005848 0.0e+00 1700.6 1203 72.0
Nitab4.5_0003811g0060 Nicotiana tabacum HOM05D004589 ORTHO05D005848 0.0e+00 1696.4 1235 71.5
HanXRQChr16g0511131 Helianthus annuus HOM05D004589 ORTHO05D005848 0.0e+00 1691.0 1203 71.1
SGA_v2.0_scaffold85G26586 Striga asiatica HOM05D004589 ORTHO05D005848 0.0e+00 1681.4 1203 70.9
Manes.16G126200 Manihot esculenta HOM05D004589 ORTHO05D005848 0.0e+00 1680.2 1203 71.7
Gohir.D06G102200 Gossypium hirsutum HOM05D004589 ORTHO05D005848 0.0e+00 1671.0 1205 71.0
CDE05G2463 Ceratophyllum demersum HOM05D004589 ORTHO05D005848 0.0e+00 1658.7 1211 69.3
Atru.chr7.2502 Acer truncatum HOM05D004589 ORTHO05D005848 0.0e+00 1647.1 1103 76.4
Lsat_1_v5_gn_6_115440 Lactuca sativa HOM05D004589 ORTHO05D005848 0.0e+00 1628.6 1196 69.6
DCAR_021911 Daucus carota HOM05D004589 ORTHO05D005848 0.0e+00 1622.1 1200 70.0
GSVIVG01035919001 Vitis vinifera HOM05D004589 ORTHO05D005848 0.0e+00 1613.6 1205 70.0
BcaC04g19264 Brassica carinata HOM05D004589 ORTHO05D005848 0.0e+00 1606.7 1209 69.6
TAR383G0245 Trochodendron aralioides HOM05D004589 ORTHO05D005848 0.0e+00 1568.9 1023 78.3
Zm00001eb078140 Zea mays HOM05D004589 ORTHO05D005848 0.0e+00 1555.0 1207 65.9
Os04g0502200 Oryza sativa ssp. japonica HOM05D004589 ORTHO05D005848 0.0e+00 1552.0 1198 66.1
Lsat_1_v5_gn_1_43861 Lactuca sativa HOM05D004589 ORTHO05D005848 0.0e+00 1520.4 1202 65.9
HanXRQChr01g0030641 Helianthus annuus HOM05D004589 ORTHO05D005848 0.0e+00 1519.6 1203 65.3
Gohir.A06G100000 Gossypium hirsutum HOM05D004589 ORTHO05D005848 0.0e+00 1506.9 1046 73.0
Gorai.010G117200 Gossypium raimondii HOM05D004589 ORTHO05D005848 0.0e+00 1501.5 1046 73.0
Manes.03G011700 Manihot esculenta HOM05D004589 ORTHO05D005848 0.0e+00 1491.9 1013 74.9
CsaV3_4G036860 Cucumis sativus L. HOM05D004589 ORTHO05D005848 0.0e+00 1489.9 1041 73.5
FAN20G1713 Fragaria x ananassa HOM05D004589 ORTHO05D005848 0.0e+00 1433.7 985 74.2
Prupe.1G486400 Prunus persica HOM05D004589 ORTHO05D005848 0.0e+00 1416.7 983 73.9
CARHR202250 Cardamine hirsuta HOM05D004589 ORTHO05D005848 0.0e+00 1385.2 1000 71.7
Hma1.2p1_0167F.1_g073640 Hydrangea macrophylla HOM05D004589 ORTHO05D005848 0.0e+00 1352.8 902 76.8
ECA248G0813 Erigeron canadensis HOM05D004589 ORTHO05D005848 0.0e+00 1346.3 1062 65.8
AagrBONN_evm.TU.Sc2ySwM_368.2742 Anthoceros agrestis HOM05D004589 ORTHO05D005848 0.0e+00 1338.2 1219 58.0
Hund04463 Selenicereus undatus HOM05D004589 ORTHO05D005848 0.0e+00 1269.2 938 70.1
Gohir.D07G034300 Gossypium hirsutum HOM05D004589 ORTHO05D005848 0.0e+00 1258.4 827 76.5
Mapoly0001s0490 Marchantia polymorpha HOM05D004589 ORTHO05D005848 0.0e+00 1228.0 1228 53.6
unitig_32.g11112 Utricularia gibba HOM05D004589 ORTHO05D005848 0.0e+00 1168.7 866 67.9
HPP92_020312 Vanilla planifolia HOM05D004589 ORTHO05D005848 0.0e+00 1158.3 904 66.3
Pp3c19_10170 Physcomitrium patens HOM05D004589 ORTHO05D005848 0.0e+00 1110.9 1205 51.6
Pp3c22_21520 Physcomitrium patens HOM05D004589 ORTHO05D005848 0.0e+00 1110.5 1204 51.6
CBR_g36903 Chara braunii HOM05D004589 ORTHO05D005848 9.5e-279 964.1 1374 42.3
SMO364G0672 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 2.6e-276 956.1 1163 45.6
SMO199G0047 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 1.4e-253 880.6 1203 43.6
SMO361G0208 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 1.3e-235 820.8 1137 43.0
Actinidia14103 Actinidia chinensis HOM05D004589 ORTHO05D005848 4.1e-229 799.3 519 79.4
TPR.G40835 Trifolium pratense HOM05D004589 ORTHO05D005848 5.9e-180 636.0 424 76.4
HPP92_024788 Vanilla planifolia HOM05D004589 ORTHO05D005848 2.2e-158 564.3 756 44.4
TPR.G38909 Trifolium pratense HOM05D004589 ORTHO05D005848 1.3e-155 555.1 435 65.1
arahy.Tifrunner.gnm1.ann1.X695T9 Arachis hypogaea HOM05D004589 ORTHO05D005848 4.9e-150 536.6 481 61.3
Cpa.g.sc187.29 Carica papaya HOM05D004589 ORTHO05D005848 2.9e-142 510.8 306 81.4
TPR.G38939 Trifolium pratense HOM05D004589 ORTHO05D005848 1.5e-138 498.4 322 76.4
SEGI_04045 Sequoiadendron giganteum HOM05D004589 ORTHO05D005848 6.9e-136 489.6 322 73.0
Gohir.D07G034250 Gossypium hirsutum HOM05D004589 ORTHO05D005848 1.3e-129 468.8 352 68.8
Hma1.2p1_0167F.1_g073630 Hydrangea macrophylla HOM05D004589 ORTHO05D005848 9.0e-120 436.0 292 75.7
arahy.Tifrunner.gnm1.ann1.3DY4JU Arachis hypogaea HOM05D004589 ORTHO05D005848 9.3e-109 399.4 321 66.4
SEGI_21363 Sequoiadendron giganteum HOM05D004589 ORTHO05D005848 9.7e-106 389.4 361 56.8
unitig_32.g11113 Utricularia gibba HOM05D004589 ORTHO05D005848 6.3e-97 360.1 317 59.6
Medtr7g069440 Medicago truncatula HOM05D004589 ORTHO05D005848 1.3e-89 335.9 390 49.7
AagrBONN_evm.TU.Sc2ySwM_368.2737 Anthoceros agrestis HOM05D004589 ORTHO05D005848 5.3e-88 330.5 299 54.2
HPP92_024789 Vanilla planifolia HOM05D004589 ORTHO05D005848 1.2e-84 319.3 256 67.2
Zm00001eb426010 Zea mays HOM05D004589 ORTHO05D005848 1.4e-67 262.7 274 53.6
TAR383G0934 Trochodendron aralioides HOM05D004589 ORTHO05D005848 8.9e-67 260.0 166 77.1
Zm00001eb426000 Zea mays HOM05D004589 ORTHO05D005848 6.6e-54 217.2 135 79.3
CSS0039966 Camellia sinensis var. sinensis HOM05D004589 ORTHO05D005848 1.9e-48 199.1 146 69.9
arahy.Tifrunner.gnm1.ann1.6TA6W9 Arachis hypogaea HOM05D004589 ORTHO05D005848 5.4e-48 197.6 161 62.7
HPP92_024790 Vanilla planifolia HOM05D004589 ORTHO05D005848 7.8e-47 193.7 138 65.2
Cpa.g.sc187.28 Carica papaya HOM05D004589 ORTHO05D005848 1.1e-45 189.9 117 75.2
MD08G1153900 Malus domestica HOM05D004589 ORTHO05D005848 1.2e-44 186.4 116 74.1
Cre07.g316100 Chlamydomonas reinhardtii HOM05D004589 ORTHO05D005848 4.7e-44 184.5 729 25.2
HPP92_020311 Vanilla planifolia HOM05D004589 ORTHO05D005848 4.0e-43 181.4 198 52.5
SMO361G0808 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 3.5e-39 168.3 252 43.7
TWI34G0107 Tripterygium wilfordii HOM05D004589 ORTHO05D005848 6.6e-38 164.1 164 55.5
Nn2g16054 Nelumbo nucifera HOM05D004589 ORTHO05D005848 5.1e-30 137.9 73 94.5
arahy.Tifrunner.gnm1.ann1.6PY749 Arachis hypogaea HOM05D004589 ORTHO05D005848 8.1e-28 130.6 161 47.2
Atru.chr7.2501 Acer truncatum HOM05D004589 ORTHO05D005848 4.0e-19 101.7 59 83.1
SEGI_40067 Sequoiadendron giganteum HOM05D004589 ORTHO05D005848 4.0e-19 101.7 71 69.0
Sp3g28070 Schrenkiella parvula HOM05D004589 ORTHO05D005848 7.9e-15 87.4 62 69.4
SMO164G0067 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 3.3e-13 82.0 239 29.7
RcHm_v2.0_Chr2g0096161 Rosa chinensis HOM05D004589 ORTHO05D005848 7.4e-13 80.9 47 74.5
C02p04820 Brassica napus HOM05D004589 ORTHO05D023960 6.2e-12 77.8 80 61.2
BolC2t06439H Brassica oleracea HOM05D004589 ORTHO05D023960 6.2e-12 77.8 80 61.2
A02p00800 Brassica napus HOM05D004589 ORTHO05D023960 2.4e-11 75.9 60 70.0
Nn4g24965 Nelumbo nucifera HOM05D004589 ORTHO05D005848 6.9e-11 74.3 51 70.6
arahy.Tifrunner.gnm1.ann1.E2IMN8 Arachis hypogaea HOM05D004589 ORTHO05D005848 2.6e-10 72.4 52 61.5
Sabra19G0134500 Salix brachista HOM05D001978 ORTHO05D000005 2.2e-09 69.3 70 54.3
GSVIVG01037947001 Vitis vinifera HOM05D004589 ORTHO05D005848 1.4e-08 66.6 38 76.3
Cc00_g21220 Coffea canephora HOM05D004589 ORTHO05D005848 2.1e-07 62.8 55 54.5
SMO364G0797 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 4.6e-07 61.6 94 39.4


User provided reference genes

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